EsuBft1088_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1088_8a-0001
Unique NameEsuBft1088_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_515contigScaffold_515:216678..220723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1088_8
Protein domainsG3DSA
Protein domainsIPR001202
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length298
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-12_001600.1
Date last modified2016-06-14
Date creation2016-06-14
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1088_8aEsuBft1088_8aEctocarpus subulatus male Bft15bgeneScaffold_515 216678..220723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1088_8a-0001EsuBft1088_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_515 218797..219171 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1088_8a-0001-exonagat-exon-12196Ectocarpus subulatus male Bft15bexonScaffold_515 216678..219247 -
EsuBft1088_8a-0001-exonEsuBft1088_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_515 219603..219676 -
EsuBft1088_8a-0001-exonagat-exon-12197Ectocarpus subulatus male Bft15bexonScaffold_515 220381..220723 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1088_8a-0001-exonagat-three_prime_utr-826Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_515 216678..218796 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1088_8a-0001-cdsEsuBft1088_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_515 218797..219171 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1088_8a-0001-exonagat-five_prime_utr-517Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_515 219172..219247 -
EsuBft1088_8a-0001-exonagat-five_prime_utr-518Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_515 219603..219676 -
EsuBft1088_8a-0001-exonagat-five_prime_utr-519Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_515 220381..220723 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1088_8a-0001 ID=EsuBft1088_8a-0001|Name=EsuBft1088_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2987bp|location=Sequence derived from alignment at Scaffold_515:216678..220723- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CACAACTATCGGCACCGGTCCGAAGAATTACCTGCTCCAGCCTGCAGCAC
ACGCGACATCTCATTCCACTTTCGCCCCGTCGACGTGTCACACTCCCGCG
AGCCGCTCCAAGGAACCCGAACAGCACCTACCTGATAGGTTTCCAATTGG
AAAATCTCGTGTCGTCTGCACGAACGCACACAGCTTGATATTACTTGTCG
AAGTCCGAAAGCATCGATCACCGGACGCACGCAGAAGCTCGCATCCGGTC
TCGCTGCCGCCTTGATCGGAAAAAGAGAATAGATTCAGGTACCAGGGGCC
GTAGGACTGCTCTTGAGAACGACGTTGAAGCTACAAAGAGGAGACCAGAG
ATAAGATGACCTACTTCAACGCGACGGTATGGGATCTGGCCAGGGACCAG
TATGGCCGGCCTTGCTGGGCGAACAAGATAACCGGGCGGGTTACGTACCA
ACTTCAAGATGGGAACGGCCTTCCATTGTGGCCACACGGTAGGATGAACT
GCCCGGTACCATGCACCATGGAAACGGTACCTGCGGGGATGGGCAACGCA
CCTGCGGGGCAGGGCGTACCTCCTATGGGAGGAGTGGGCAGCATCGTGCC
TGCAGGAGGGGCGTGGGTGGTACCGGTGGTCGGCCAGTCCACGGGGACGG
TCGTGATTGTAGGCGACGAATGCAAGGAGGACAAGTGGTCTGAGTACACC
GACGACAACGGAAAGAAGTACTACCACAACCCCTCAAAGGACGAGACCAC
GCGGGAGAAGCCCAAAGACTTCGACAAGAAGGAGGGAAAGCCCGCCCCGC
CCGCCGACACCGAGAAGAAGGAGAAGAAGAAGCCTAAGTACATCGTCACG
CGAGGTTGGTGGCCATGAATCGAAGTACACATTTCCACAGTGAAGTGATC
ATCACTCGGAGTAAGTTGAACCGTGACACAGTTCCATATTGGGCACGTTT
AGAGGCATGATTGTACTTGCAGACGAGTCTCCTCGACCAATGGGCATATA
AAACATAGCAGTACTGGCGTATTGAGCTGATGAAGTGTTTTGCAAACGTT
TTCTGTGTCGTGGTACCGTCGAGCTCGCGTTTGACCGTTCCTAATTCTTT
TGTGTTCCGTGTCGTTTGTAGAATGACTCTTCGTGCCTCGCATTAAGTTT
TAGCTCGCGATTTTAGTTGATCCCCGGCTGTCGACTTGCGAGCGAAGTAG
TGGTCACACTGCCTGTGGATAGATGTTGCCTGAGGCATGCCACACACCCT
CAGAAAAATTGACTTGTATTCACCCGTGGAAGTAAATATTTTGGTAGACA
GAAACATGAGGGCAAACAGTTTTACGGTCGAGTTCTACTTTTGTGGCTTC
GGTCGGGGGCATGAAGAATATGCCCCAATAGGTTACTCGCTAGAGAGATA
ACGCACCGCTCTTGTTTGAAGGGGAGTTGCTTGCACGGGGGTTCCTAGTC
GTTGCTGTTTTGACATGTTTTCTGTGTACAGAATTGTACCAAGTAGATAT
TTGCTGGGTGGGAGAGGCTCGATGCTCTAGAATAACTTCGCGTACCAGAA
GCAATCAAGAAGAGGTTGTCTGACTTCTGAGTGCGTCAAAGCCCCGCGTT
CTAAGCGTGCAGTTTATCTGTTTTGTTCCTGCTGCAGGAACTTGCGGGGA
AGAATTTAGGACCACAAATCAAGCCACTAAATGTACGGTGCACTGCTGTG
AAGTCGAGATGAATAATTGTTGCCGCTCGTGTGCTGCGATCGGGCGCACG
CATCCTTGAGATGTCGCACTTTTCCACGTAGATACTGAACCTCGAGGTTG
TTTATGGCTTCAACGCAAAGGTGATGTGATGTACGTGTTAGGGTAGCGGG
GGCTGGGGAGGGCATGTTTGTACAACTGTACTTCATGGTTTTGAGCAGTT
TTTATATTCAACCTTTTTTCAAGGGCTTGCGGTGTCGTGTCTTGGCAACA
CTACTGCTGTACTGTAGTATAAACGTTAAAATGTAAAAGTCAGTCGGGCC
TTCGGCCCTATATTCTGTGATGTCCGACGATGTCTTCTGGTTCGTCAACG
GGCGTACGAATGTACAATAAAGTAAAGTAGAGCCGGTGAGTCTTCCCCCC
CACCCAGCGTCCTCGCGGTAGGCAGTGTACTACCATCATCATCAATCATC
GTAGAACGAAGATGATACTGACCGGCGGGCTCAAGATGATTCTCGTCCCC
TGAATCGAGTGGAATTTTTGTGAGGGAGGAAGAAGAGTGGACGGTGTGTG
TATATATATATATATATTTGGCATTTGAGGGTAGGAGGCGCTTCTCTCCT
GTGGGGTCTTTGCCAGGAATAGCCCGCGGTCGAGTTTTTTCTTCCTTGTA
CCTGACGACGGTACGACGGTACAGGTGTGCACTTACCTGGACCCGGATTT
GTAGAGAAATGGTGCCCGCAAGAAAAGCACCGGGGAGAACAAGGTGGGAT
ACAGGAATATTCTGCCAAGGACAGACAGTAGGAAGTGGGTGTGACTAGAT
CACCTCTTTGCACGTGTTGGGTAGGTAAGACGGAGGGGTTTGCTCTACTC
TTCCAACAAAGATTTTTCTCGTTTTTTCTTTGACGTTGTTTCAAGTTTTT
CATGAAGTGAGAACCGGGACGAGGCTGAGCGGGACGGTGGGAGTATAGGA
TGGGCCTGGCCGCCCGAAAACCAACCGCCATACTTTGACGGGTCAGTAAA
AAAAAAACTGTGTCAGTTTTCGTGGTGAGTTTGAGTCGTCGTTGGGATTT
GGCGATGTACAGTATCTCGACGACAGCATGGTTTGAGTACATTCGATTGA
GTTGCATTTTTTTCGCGAGCAGGAAGACTTGCTCGAGTTTTTGAGCCTTT
TCCCCCTGTTTATTTTGGGTGTAACGGAAAGGACGCCTTCAACCGGCCGG
GCCAATCAATGTGGAATTAATATATCGACGTGCAGATTCAATATATTTTA
CGACGACTTCAGTAAGAATTGTTCATCCATACTCAAC
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protein sequence of EsuBft1088_8a-0001

>EsuBft1088_8 ID=EsuBft1088_8|Name=EsuBft1088_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=124bp
MNCPVPCTMETVPAGMGNAPAGQGVPPMGGVGSIVPAGGAWVVPVVGQST
GTVVIVGDECKEDKWSEYTDDNGKKYYHNPSKDETTREKPKDFDKKEGKP
APPADTEKKEKKKPKYIVTRGWWP
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mRNA from alignment at Scaffold_515:216678..220723-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1088_8a-0001 ID=EsuBft1088_8a-0001|Name=EsuBft1088_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4046bp|location=Sequence derived from alignment at Scaffold_515:216678..220723- (Ectocarpus subulatus male Bft15b)
CACAACTATCGGCACCGGTCCGAAGAATTACCTGCTCCAGCCTGCAGCAC
ACGCGACATCTCATTCCACTTTCGCCCCGTCGACGTGTCACACTCCCGCG
AGCCGCTCCAAGGAACCCGAACAGCACCTACCTGATAGGTTTCCAATTGG
AAAATCTCGTGTCGTCTGCACGAACGCACACAGCTTGATATTACTTGTCG
AAGTCCGAAAGCATCGATCACCGGACGCACGCAGAAGCTCGCATCCGGTC
TCGCTGCCGCCTTGATCGGAAAAAGAGAATAGATTCAGGTACCAGGGGCC
GTAGGACTGCTCTTGAGAACGACGTTGAAGCTACAAAGAGGAGGTGAGAA
GTGAGTCCTGTGTGAGGGAAAGCGTGGTAGGTTCAAAGGCCAGACCACTC
AGTCAGCTATGTAGACCACTCTGTCTGTCAATATGTTTTACGAGATTCTC
TCGTTCTACCCGCCATGGTATGTAACGAAAAAAAAGTATTCTAATGAGTA
GCAACTCAACAAGGCGGCCAGTGAGCGCTGTGACCATGTTGAAGGTAAGC
AGTGGAGTCTTCGCGCCCCCGTTTTGTGGCATTTTTGTGCCAAGATTCTT
GAGTAGAACGCACGCAACCCAGGCATTCATCATCCATGTGCACATACATA
GCAGCCGAAAATATCTATAGACCACTGCTTTCTTTGGTGACCAGGTTCGT
TAAATTTGCCGTCAACACGATCCAGGGTGTGTTTGACTTGACTGTGTTTT
ATATGCCCCGAAAGTTCCGATGGGTTGTTGCCTCTTCTTTCCCTTCCTCT
TCGCTCCGCTACAAACCAATTCTTAAAAGGGTGGAATTGATCAAGCCATG
CTGGATACAATTCGTTCTTGTCGGCGCGATCTAACCGCTCATAGAGAACG
ACCCCTGTGGCCATTTGCAAGGCTACATGGTGCGCGGACGAGAGCCACCA
CTCGGAGCACTTTCCCCCGACCAAATGCCGATCACCTCTCGCTGAGTGTT
CTCTGTTTTGGCGCTATTCACTGTCCTTTCTACCGCCTGGATGGCAGACC
AGAGATAAGATGACCTACTTCAACGCGACGGTATGGGATCTGGCCAGGGA
CCAGTATGGCCGGCCTTGCTGGTGAGGATACGCGCGCTCTTCCCTCCATC
TCCCCCCGGCTCATGCACCCATCCGCCGCAACGGCGTTGAGTGTGGCGAT
ACTGACGATGTCCTTGAAGGTTGAAGGGCGAGCTGGATGGAGCTGGATAC
TGCAAATGTTGAGAATATACCTGGAAATACGCAACTGCATGAAATCTCTT
TAGACACTGACTGTCTTTGCGTGTCAACTTCAAGTTTAGCTGTCTGGGTG
TGGTTTCATCAAGTACATCGTCGGCTGTACGGATCGAAAACCATGTGGGT
CACCACACCTGGAGTGCTTCAAACCTTGGCGCATCCACTCCCCCTCATCC
CTGCCCGTCGACGTATTGTTGTTTAGGGCGAACAAGATAACCGGGCGGGT
TACGTACCAACTTCAAGATGGGAACGGCCTTCCATTGTGGCCACACGGTA
GGATGAACTGCCCGGTACCATGCACCATGGAAACGGTACCTGCGGGGATG
GGCAACGCACCTGCGGGGCAGGGCGTACCTCCTATGGGAGGAGTGGGCAG
CATCGTGCCTGCAGGAGGGGCGTGGGTGGTACCGGTGGTCGGCCAGTCCA
CGGGGACGGTCGTGATTGTAGGCGACGAATGCAAGGAGGACAAGTGGTCT
GAGTACACCGACGACAACGGAAAGAAGTACTACCACAACCCCTCAAAGGA
CGAGACCACGCGGGAGAAGCCCAAAGACTTCGACAAGAAGGAGGGAAAGC
CCGCCCCGCCCGCCGACACCGAGAAGAAGGAGAAGAAGAAGCCTAAGTAC
ATCGTCACGCGAGGTTGGTGGCCATGAATCGAAGTACACATTTCCACAGT
GAAGTGATCATCACTCGGAGTAAGTTGAACCGTGACACAGTTCCATATTG
GGCACGTTTAGAGGCATGATTGTACTTGCAGACGAGTCTCCTCGACCAAT
GGGCATATAAAACATAGCAGTACTGGCGTATTGAGCTGATGAAGTGTTTT
GCAAACGTTTTCTGTGTCGTGGTACCGTCGAGCTCGCGTTTGACCGTTCC
TAATTCTTTTGTGTTCCGTGTCGTTTGTAGAATGACTCTTCGTGCCTCGC
ATTAAGTTTTAGCTCGCGATTTTAGTTGATCCCCGGCTGTCGACTTGCGA
GCGAAGTAGTGGTCACACTGCCTGTGGATAGATGTTGCCTGAGGCATGCC
ACACACCCTCAGAAAAATTGACTTGTATTCACCCGTGGAAGTAAATATTT
TGGTAGACAGAAACATGAGGGCAAACAGTTTTACGGTCGAGTTCTACTTT
TGTGGCTTCGGTCGGGGGCATGAAGAATATGCCCCAATAGGTTACTCGCT
AGAGAGATAACGCACCGCTCTTGTTTGAAGGGGAGTTGCTTGCACGGGGG
TTCCTAGTCGTTGCTGTTTTGACATGTTTTCTGTGTACAGAATTGTACCA
AGTAGATATTTGCTGGGTGGGAGAGGCTCGATGCTCTAGAATAACTTCGC
GTACCAGAAGCAATCAAGAAGAGGTTGTCTGACTTCTGAGTGCGTCAAAG
CCCCGCGTTCTAAGCGTGCAGTTTATCTGTTTTGTTCCTGCTGCAGGAAC
TTGCGGGGAAGAATTTAGGACCACAAATCAAGCCACTAAATGTACGGTGC
ACTGCTGTGAAGTCGAGATGAATAATTGTTGCCGCTCGTGTGCTGCGATC
GGGCGCACGCATCCTTGAGATGTCGCACTTTTCCACGTAGATACTGAACC
TCGAGGTTGTTTATGGCTTCAACGCAAAGGTGATGTGATGTACGTGTTAG
GGTAGCGGGGGCTGGGGAGGGCATGTTTGTACAACTGTACTTCATGGTTT
TGAGCAGTTTTTATATTCAACCTTTTTTCAAGGGCTTGCGGTGTCGTGTC
TTGGCAACACTACTGCTGTACTGTAGTATAAACGTTAAAATGTAAAAGTC
AGTCGGGCCTTCGGCCCTATATTCTGTGATGTCCGACGATGTCTTCTGGT
TCGTCAACGGGCGTACGAATGTACAATAAAGTAAAGTAGAGCCGGTGAGT
CTTCCCCCCCACCCAGCGTCCTCGCGGTAGGCAGTGTACTACCATCATCA
TCAATCATCGTAGAACGAAGATGATACTGACCGGCGGGCTCAAGATGATT
CTCGTCCCCTGAATCGAGTGGAATTTTTGTGAGGGAGGAAGAAGAGTGGA
CGGTGTGTGTATATATATATATATATTTGGCATTTGAGGGTAGGAGGCGC
TTCTCTCCTGTGGGGTCTTTGCCAGGAATAGCCCGCGGTCGAGTTTTTTC
TTCCTTGTACCTGACGACGGTACGACGGTACAGGTGTGCACTTACCTGGA
CCCGGATTTGTAGAGAAATGGTGCCCGCAAGAAAAGCACCGGGGAGAACA
AGGTGGGATACAGGAATATTCTGCCAAGGACAGACAGTAGGAAGTGGGTG
TGACTAGATCACCTCTTTGCACGTGTTGGGTAGGTAAGACGGAGGGGTTT
GCTCTACTCTTCCAACAAAGATTTTTCTCGTTTTTTCTTTGACGTTGTTT
CAAGTTTTTCATGAAGTGAGAACCGGGACGAGGCTGAGCGGGACGGTGGG
AGTATAGGATGGGCCTGGCCGCCCGAAAACCAACCGCCATACTTTGACGG
GTCAGTAAAAAAAAAACTGTGTCAGTTTTCGTGGTGAGTTTGAGTCGTCG
TTGGGATTTGGCGATGTACAGTATCTCGACGACAGCATGGTTTGAGTACA
TTCGATTGAGTTGCATTTTTTTCGCGAGCAGGAAGACTTGCTCGAGTTTT
TGAGCCTTTTCCCCCTGTTTATTTTGGGTGTAACGGAAAGGACGCCTTCA
ACCGGCCGGGCCAATCAATGTGGAATTAATATATCGACGTGCAGATTCAA
TATATTTTACGACGACTTCAGTAAGAATTGTTCATCCATACTCAAC
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Coding sequence (CDS) from alignment at Scaffold_515:216678..220723-

>EsuBft1088_8a-0001 ID=EsuBft1088_8a-0001|Name=EsuBft1088_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=375bp|location=Sequence derived from alignment at Scaffold_515:216678..220723- (Ectocarpus subulatus male Bft15b)
ATGAACTGCCCGGTACCATGCACCATGGAAACGGTACCTGCGGGGATGGG
CAACGCACCTGCGGGGCAGGGCGTACCTCCTATGGGAGGAGTGGGCAGCA
TCGTGCCTGCAGGAGGGGCGTGGGTGGTACCGGTGGTCGGCCAGTCCACG
GGGACGGTCGTGATTGTAGGCGACGAATGCAAGGAGGACAAGTGGTCTGA
GTACACCGACGACAACGGAAAGAAGTACTACCACAACCCCTCAAAGGACG
AGACCACGCGGGAGAAGCCCAAAGACTTCGACAAGAAGGAGGGAAAGCCC
GCCCCGCCCGCCGACACCGAGAAGAAGGAGAAGAAGAAGCCTAAGTACAT
CGTCACGCGAGGTTGGTGGCCATGA
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