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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D7G842 |
| ProteomeId | EsuBft1088_6 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | IPR014952 |
| Protein domains | PS51257 |
| Protein domains | SignalP-noTM |
| Protein domains | SignalP-TM |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 5 |
| Max annot lvl | 2759|Eukaryota |
| Length | 157 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 1e-173 |
| EggNOG OGs | 2ANKF@1|root,2S188@2759|Eukaryota |
| Ec32 ortholog description | Mitochondrial TOM complex subunit, Tom20 homolog |
| Ec32 ortholog | Ec-12_001580.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Domain of unknown function (DUF1823) |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1088_6a-0001 ID=EsuBft1088_6a-0001|Name=EsuBft1088_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1576bp|location=Sequence derived from alignment at Scaffold_515:234717..241041+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTTATTTTTTTTCCTACCGACGGAAACTCGACGAGATACGGAGTTACACA CTCTTGTGAGGAAGGCGCCCAAGCGCTACTACTGCTGTGAACTGGGCGAG GACAAGGACAGCGACCCAGACCCAGAGGACAGCCGGGTTGTTCAGGAACA CCAACACACGAGCATGACTTCCAGATTAGCTGTATGGCAGTGCGGACTAG TATTCCTGGTGGCATGCTTGCCGCGACAGGCCAGCTCGTTCCTCTTCTGC CCCACGGTACCGAGTGCCGCCTCTCGACCAGCCCGAGCATCGACCACCAC TGCCGCCGCACCCGAGGGTGATGCCTCGGCCCAGGAGGGCACTACCGCCA CCCCGCCGCCGTCTCTCGACCGTTCCGCCCCCCTCTCCTTCATCGCCAAG AACAACGTCAACCTTGATGGGGACTTCCTCTCGAACAAGGAGGGAGAGCC GACGGCGGAGGAGCTCTCGAACGAGAACCTCATCAAGATCGTGGCCGAAA AGAGCACGGACGAGGAAGTAAATGTCATCGTGTGGAAATGCTTGGGCTAC CGGTACGACGCTGGTGAGGACGCGTGGAAGGCCGTAAAGGTGTTTCCTCG ATGGGAGGCCATGTACCCGGAACCCCCCGATCTCCTGGGGGTAACACGCG TGTACGAGAAGAGTGTCGATAAGCCCGTCCTAAAGGCCGTGCAGGCCCTG ATCAGGGCCGTCCCTTCGGAGCATAAGCGTTGCATCGTGGAACAGCTGAG ACCGATAGGATTTACAGGCCTGACGCTGGACGAGCTGACTCCGAACAGAA CACGCAGGGCCCAGGTGACAAACTTTCTGCTGTATTTCCGAGATCAACTT TGGGGTGTTCCCTTGGAAGAGGTCGAGCGACGTAGAGTGGAGAGGATCGA AGCGGCCAAACGGGAGGCGGAGGCCGGAAAAGAAGCTGGAGCGTAGCCGT TGACGAACGATGGGCTATAACAGGGCCTCTCCGATACACCGCTGCTGCGT AGGCGATGGGCAATGAGATGGTCGTTGCTTGCAGTATCGTCGCACTTGGT ACTGCAGGGCTTGGGTTGCCGTCGTTCGAAGGGCGAGCTGCATGCTGAAT TCACGCCTGGTGCTTCGATGCCGAGAACCATGACTGGGTGTACGAGGCCT TTTCGAAAGATAGGTGTGTACGCAACACGCGTGTGGTGGATACGTTCCTA GAAGGTCCACATCAGCGATGGTAACTTCCCACCTCGGGGTACAGAAAGTT CAGGATATTCCAGCGGTTCGGCCGACCTAACAGGCAGATAGAGGAACCGA ATCGCTTTGTCGCAGCCAGCCACCGTCCGTTGATGGTCCAGCCACCGCTG TTGGGAGGAATAATCTGGCTTGCTCTCGAAGTTCCATGGGTAAACGGTGG ATGATAATCGAATCGAAAGCAAATGTTGCAACCTGTCGCTCGCGTGGACC ACGACAATGTTTTCGAGATCACTATTCACTAGTGGCAACGATGAGGCCAA CATGAAAGACAACGAGGAAAGTTCATGATGCCGGGAAAAAATAAGGAACG AAAAAATGTGCTCAAGCAGGGGATCG back to topprotein sequence of EsuBft1088_6a-0001 >EsuBft1088_6 ID=EsuBft1088_6|Name=EsuBft1088_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=260bp
MTSRLAVWQCGLVFLVACLPRQASSFLFCPTVPSAASRPARASTTTAAAP EGDASAQEGTTATPPPSLDRSAPLSFIAKNNVNLDGDFLSNKEGEPTAEE LSNENLIKIVAEKSTDEEVNVIVWKCLGYRYDAGEDAWKAVKVFPRWEAM YPEPPDLLGVTRVYEKSVDKPVLKAVQALIRAVPSEHKRCIVEQLRPIGF TGLTLDELTPNRTRRAQVTNFLLYFRDQLWGVPLEEVERRRVERIEAAKR EAEAGKEAGA back to topmRNA from alignment at Scaffold_515:234717..241041+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1088_6a-0001 ID=EsuBft1088_6a-0001|Name=EsuBft1088_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6325bp|location=Sequence derived from alignment at Scaffold_515:234717..241041+ (Ectocarpus subulatus male Bft15b) GTTATTTTTTTTCCTACCGACGGAAACTCGACGAGATACGGAGTTACACA
CTCTTGTGAGGAAGGCGCCCAAGCGCTACTACTGCTGTGAACTGGGCGAG
GACAAGGACAGCGACCCAGACCCAGAGGACAGCCGGGTTGTTCAGGAACA
CCAACACACGAGCATGACTTCCAGATTAGCTGTATGGCAGTGCGGACTAG
TATTCCTGGTGGCATGCTTGCCGCGACAGGCCAGCTCGTTCCTCTTCTGC
CCCACGGTACCGAGTGCCGCCTCTCGACCAGGTACAAAACGTAGCCGCTT
CCACCCAGACATGATAGCTTCACCTTCTCGCTGACAACGTGCTGCGCTCG
CTCGCACGCCGCTTTCATGTACCAGCAACGTGAAAAACTTTGCTGTGGTA
CATCTGCTGCTGCAGCACGGCTGTGTGGTGAGAACAAAACGGCAAGTTGA
ACGTTGTAATGTACGGTACCGCACGAACAAACCATGCCCGATGCATGTTT
CACAGCTCCACGTGCGAGTGCGAGTGAACAGCACCGACACCAAAGCAGCC
CATATATATATAGATATATACTCCCTCTGTCCGAGAATATAAGCAAGGTT
TGGACAAAAAGCAATAGAACTCGTGTCTGCCGAACTCTTTTTCCGAACGG
TTTTTTTTTCTGGTTCCGCCGCACTGGCGCGCAGCGCGCAGAACCGCTGC
TCTTTTCACACCACCTCAACAAAGTGTGTTGCACCCCAGCACAACACGCC
CGATTTCACCACCCCAACTTTGGAGCCCCGGTCAAACGCCTTCCCGTCTG
CTGGCGGGACATGTCTGCTGCTGGGAGTGCCTCCCAGGGGCTCAAACGCA
AGAATTTCAACGTTTCGGAGAGAGAAGAGGTGGTACGCTACCTTCTCGCC
GACAGCGAAGACGGGGTTCGGCAGCATGGTTCGTACCACAGAGCCGCGGA
GAAGTACGGGTGCCATTGGGAGACCATAAAGAGGATTTGGCAGAAGCACG
AGAAGCGGGAGGAATCTGGAGATCCTAGTTTGTACATTGGGAACGACCGC
AAGGGCCATTCCGGCTGCAAGGGCATCGATATTGAGAACCTACGTGCCCG
CCTCCTTGAGATTCCGCTGAACGAACGCACGACACAGCGCCGCCTGGCCG
CGGCGCTCGGGATTCCCAAATCCACACTGCACAACAACCTCAAGGCGCTT
GGATTGAGAGCGCATTCCCCCGTATCCGACGAGGCGTGGCTGAAAGGGAC
GGCGGCACTCGCGGCGCTGGAGGGGCAAGGGGGGGCCGCAGGAGGGCGCG
GGGGGGCTGCAGGAGGGCGAGGGGGGGCTGCAGGAGGGCGAGGGGGGGCT
GCACGAGGGCGAGGGGCGGCTGCAAGAGGGCAGGGAGGGGCGGCTGCTGC
AGGGCAGGGAGGGGGGGCTGCAGGGGGGCCAGGGGCGGCGTAGAATGAGG
TGGTTGCGGTGTACTCCGGAGTATGCAGTAGATCGTGTGACCGAGAAGTA
GCAGGGAGCGGCTGCAGTGGGGCAAGGGGCGGCCGATTACGGTTTCGCCG
GACTGTGTAAACGGAGACGGCTGCCATGGAGTAGAGTTGTTTGGCTACCG
AGGCTGATGGGCAGGCGCAGAAACAGGCAGCAGGTTCGGGGCGCGGGTCA
TGTTGGTTTTCTATGATGACGTGAACACGGGGATGATAATTAACCATCCC
CTCCCTTTTCGTGATGCTCCATGTTTTTTCATCCAAAAAGTGGCGTTATG
TCTAATTCTAGCTCTTCGAAGTACTTTCATCACACTGGACAGATATTACG
TCCTGTCGCTGGGTATGCCAAAATTCCGCCTTTTCCCGGACCAGGGGATG
GTAACGCACCATCCCCCCCCCATCGAGCGGATTTTTTTTTTTCTCTCTCC
AATGTCATATGTGATCGTTTGCCAAAGTTGTCCGACGTCCACCGTGCCCA
AATGGCACGTTTCCGTCAATATTCTACAAACCTTGCTTATATTCCCGGAT
TTCCAAACCTTGCTTATATTCTCGGACAGAGGGAGTATAGATATATATGT
TTGACGTTGCACATGCGAACTGCGCTACTTCGGGGACACACAGACTCGGC
TTCTGATCGCACGAACGGTGGCGACCGTTCAGTTGTCTCATGGAGTGCAG
TGACAACCGTTGTCGATGTGCTTTGCTCCTCTCGAACACAAGTTATCACT
TCCTGTAGTCCGCGGCGAAGTAGCACGTGAAAATGATTGTGCAGTGCTCT
TAGTCTTGAAGTCGAGAGCAAGACAAAGTCGCAGCGGTGTGGCATACTCA
TATAACATCGGTACAACGGCGAAAGCTCTCCGTTACCCCACATATTCCCG
CGGTCGTGCATTTCGCATGCATTCCTTGACGGTACCGCTGTACGGTCAGT
CCGACGCCTTGCGCCCACCATATCGAATTGGTTGTCGGGTGAGAGGCTGA
TCGTCATTCATCACACTCACAAACACACACTGTGTACTTCCAACGCCAAA
AGTCGACGGTAACACCTCACACCGATTTCGTTCGGTTGACAAATGGCTGG
ACATCAACGTTTCGGTCATTTTCACCACTGCCTGCTGCCGCCATTGCCTG
CATGGATGTATACGTGCACGCGCCGTTCCGCCCAGCCCGAGCATCGACCA
CCACTGCCGCCGCACCCGAGGGTGATGCCTCGGCCCAGGAGGGCACTACC
GCCACCCCGCCGCCGTCTCTCGACCGTTCCGCCCCCCTCTCCTTCATCGC
CAAGAACAACGTCAACCTTGATGGGGACTTCCTCTCGAACAAGGAGGGAG
AGCCGACGGCGGAGGAGCTCTCGAACGAGAACCTCATCAAGATCGTGGCC
GAAAAGAGCACGGACGAGGAAGTAAATGTCATCGTGTGGAAATGCTTGGG
TGAGAGCTGGGATCTGATGTCGAAAGGAGGAGGTGCACCATGAACTAACT
TTTCAGACGAGTCAAGCACATGGCCCTGTGTATGCGTCCATAGAACTTCC
CATCCACGTCGGCAAACCCGGAAAGCAGCGCGCCTGGCTGTCAGACGCCA
GGCAGGCGTTTCCCGGCGGGTCAATCCGAAGAGCGACTGCACCCCGAGAA
CCTTTTGCGTGAAGAAGATTGAGGACATTCTCATACCTCCGGCGGGGTAT
ATGGCTTCGACTTACTGCTTGCCGTTATCGATTTCCCTGTGGCAACGGCC
AGGCATCCTTCGAGACACGATGCCTTCCCTGCGTTCCCGTTCTGCCTGTT
GCGCCTTTCGGTAGTGCCAGCCACCACGGCGATGCCAGCCACCATGTTTT
TGGACTTCACCCAACGTTTCTCTAGGGGTACAAGGACATGCGCGTTTCGC
ACTATCCTTCTCGGATGGGTTCTTTTCCATCGCAACCAAACCATCGCTTC
TCGCTCGCGGGGTGTTGTGCGGGCGGCCCTTCCTCTGCCCAGGCTACCGG
TACGACGCTGGTGAGGACGCGTGGAAGGCCGTAAAGGTGTTTCCTCGATG
GGAGGCCATGTACCCGGAACCCCCCGATCTCCTGGGGGTAACACGCGTGT
ACGAGAAGAGTGTCGATAAGCCCGTCCTAAAGGCCGTGCAGGTGCGGTGT
GTCCTGCTCGGAGGACGGTGGTGTATCGCTAGCGAAAAAATCCCACAGGC
TATAACCATTTGGACTTGTATGATTCGACAACGTTGACCCCTCGTTGAGG
CCACTTCCATTGTTGGTATTGACCACGCTTACAACTGCTGTGCCCCACGC
GTATTGAACACGTTTACAACTGTGCCCCACGTAGGAGGATCGGTCGCGTT
GAGTGTATCATGTTTTGATGTTCGGCCCCTTCACGTACCACCGCACCTTG
TGCTGACATGTGCCCAGAGATTCTTTTTGCACATCGTCGAGCCTTGGTTA
CACTTTGATAGTAGCTCTCTAGGGCTAACCGATGTTGAACGTAGCAAGGC
TAGGTTCTTCACGCGAGCAAGGCTAGGTTGCTCACCCCGCATCTACCCTA
ACCCTAACTCTAACCCTACCCCTCACCCACGGCCAAAGCACGGCCTAGCG
GCCGCGAACAGGGCGGCACGCGGCTGCGCCGTGTGCTCGGAATGCGGAAC
GGGGAGAGGGCGCTGGAGAGGAATCGGCCGACAGAACCAACGCCGAACAA
CGCCCGACCAATCAGAACGTGTTAGTCCTAGAGACCTCCTATTTATCAAT
GTGTAAACGCTACTCACATTGTCACAAGGTACAAATAAATCGCCCTCCAG
ACATGGTGGGTAGACTAAGTATGCCTGATACCTCAACAAAGCACGCGTTG
GCACGGAAAACAAGAGGCAATAGATAATTCCCGAGGATAAAGTCGATCTG
CCTGGACACGAGCGTGAACGAACACGTCACCGACCGAGCCCTCTCTCATA
AAGGTCCGCAGGAATCTATCGGCGTGTGTGTCCATGCATTACTGGTCCTA
GCTGCCCGCTTCGAAAACCCTCACCACGCCCCGCGGGAGGTGATGCGATG
CTACTCTACCTTGTGAAGGCAAGGCGCACAAGTTAACCACCATTTCGGCA
CCACCGGGTGATGGTGCATGGAGTCGCTTGAAACGAGGTGTCACGACGGT
ATACTTATTTCTCCTGCCACCCTGCGAGCCTTTCAAGGGCTCGCGCCTGT
TCTCACACAATCGAAGCTTGTTGAACACACGCATGAACGTGTTCTCAACC
AGATGTTGCGTCTACAAGCCTCTCGTGCGCTCGCCTCGATATGTGCCCGT
TGCCGCTGCGTGTTCCTGCTGATTGAAGGCCCTGATCAGGGCCGTCCCTT
CGGAGCATAAGCGTTGCATCGTGGAACAGCTGAGACCGATAGGATTTACA
GGCCTGACGCTGGACGAGCTGACTCCGAACAGAACACGCAGGGCCCAGGT
GAGACCTTTTTTCTTTTTTCGGAACGGGCACCTACAGTTGCAGCTCAATG
TAGGGCACCTGTAGTGTTTTCGCGAGTGCTTTTCTCATGGGCTCTACAGA
TTGTGCGCGATTCGACTTCAACGAAGGCGTTGCGAGCCAATCAGCATGTG
TCCAGTGGGGGCTACGCTGCAGTAATGCGCCGTGTGCGTGGATGGCTTCT
TTCCACCAGAACATGCAGAAAACCTTCAAAGCATTTTGCAGTATGGACTC
TTCCTTGTCGCATGTACGGGTACCGGTTGTTTTGGAAGGACCACTTGCAG
TCTGCACTTCGGTAGCCGTGCCAACCCTTTCCCGCAAGTTCTGGCGCTTT
TCACCCCACACCTCTTGCAAAAAACCATACCTCATCATTTTCGACCCCGT
TCACATCACCGGAGGAGATTCATCGTGTAGAATCAAGCATTATTTTCTCG
CATAGTTAATTTCGAAAATACCGTTTCCCCCCGTTGGTTTGAAGTCAATA
CCCCATACTAGGCCCCTGAGTGCTAGCTCTCCCTGTCTCTGTCGCTGTCG
TTGAGACCAACCTTCGCTGACAGATACCTCGCACGCCGCGTTGGTTGCCG
TTCTTTATTACCCGCCATCTGCTGTCCGGTACATCTTCCTTCCTCTCCCC
GCCGTCTCAAAAGGTGACAAACTTTCTGCTGTATTTCCGAGATCAACTTT
GGGGTGTTCCCTTGGAAGAGGTCGAGCGACGTAGAGTGGAGAGGATCGAA
GCGGCCAAACGGGAGGCGGAGGCCGGAAAAGAAGCTGGAGCGTAGCCGTT
GACGAACGATGGGCTATAACAGGGCCTCTCCGATACACCGCTGCTGCGTA
GGCGATGGGCAATGAGATGGTCGTTGCTTGCAGTATCGTCGCACTTGGTA
CTGCAGGGCTTGGGTTGCCGTCGTTCGAAGGGCGAGCTGCATGCTGAATT
CACGCCTGGTGCTTCGATGCCGAGAACCATGACTGGGTGTACGAGGCCTT
TTCGAAAGATAGGTGTGTACGCAACACGCGTGTGGTGGATACGTTCCTAG
AAGGTCCACATCAGCGATGGTAACTTCCCACCTCGGGGTACAGAAAGTTC
AGGATATTCCAGCGGTTCGGCCGACCTAACAGGCAGATAGAGGAACCGAA
TCGCTTTGTCGCAGCCAGCCACCGTCCGTTGATGGTCCAGCCACCGCTGT
TGGGAGGAATAATCTGGCTTGCTCTCGAAGTTCCATGGGTAAACGGTGGA
TGATAATCGAATCGAAAGCAAATGTTGCAACCTGTCGCTCGCGTGGACCA
CGACAATGTTTTCGAGATCACTATTCACTAGTGGCAACGATGAGGCCAAC
ATGAAAGACAACGAGGAAAGTTCATGATGCCGGGAAAAAATAAGGAACGA
AAAAATGTGCTCAAGCAGGGGATCG back to topCoding sequence (CDS) from alignment at Scaffold_515:234717..241041+ >EsuBft1088_6a-0001 ID=EsuBft1088_6a-0001|Name=EsuBft1088_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=783bp|location=Sequence derived from alignment at Scaffold_515:234717..241041+ (Ectocarpus subulatus male Bft15b) ATGACTTCCAGATTAGCTGTATGGCAGTGCGGACTAGTATTCCTGGTGGC ATGCTTGCCGCGACAGGCCAGCTCGTTCCTCTTCTGCCCCACGGTACCGA GTGCCGCCTCTCGACCAGCCCGAGCATCGACCACCACTGCCGCCGCACCC GAGGGTGATGCCTCGGCCCAGGAGGGCACTACCGCCACCCCGCCGCCGTC TCTCGACCGTTCCGCCCCCCTCTCCTTCATCGCCAAGAACAACGTCAACC TTGATGGGGACTTCCTCTCGAACAAGGAGGGAGAGCCGACGGCGGAGGAG CTCTCGAACGAGAACCTCATCAAGATCGTGGCCGAAAAGAGCACGGACGA GGAAGTAAATGTCATCGTGTGGAAATGCTTGGGCTACCGGTACGACGCTG GTGAGGACGCGTGGAAGGCCGTAAAGGTGTTTCCTCGATGGGAGGCCATG TACCCGGAACCCCCCGATCTCCTGGGGGTAACACGCGTGTACGAGAAGAG TGTCGATAAGCCCGTCCTAAAGGCCGTGCAGGCCCTGATCAGGGCCGTCC CTTCGGAGCATAAGCGTTGCATCGTGGAACAGCTGAGACCGATAGGATTT ACAGGCCTGACGCTGGACGAGCTGACTCCGAACAGAACACGCAGGGCCCA GGTGACAAACTTTCTGCTGTATTTCCGAGATCAACTTTGGGGTGTTCCCT TGGAAGAGGTCGAGCGACGTAGAGTGGAGAGGATCGAAGCGGCCAAACGG GAGGCGGAGGCCGGAAAAGAAGCTGGAGCGTAG back to top
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