EsuBft1088_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1088_3a-0001
Unique Name	EsuBft1088_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_515	contig	Scaffold_515:266874..268420 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1088_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	147
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1088_3a	EsuBft1088_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_515 266874..268420 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1088_3a-0001-exon	EsuBft1088_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_515 266874..267821 -
EsuBft1088_3a-0001-exon	agat-exon-12164	Ectocarpus subulatus male Bft15b	exon	Scaffold_515 267898..268420 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1088_3a-0001-exon	agat-three_prime_utr-820	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_515 266874..267042 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1088_3a-0001-cds	EsuBft1088_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_515 267043..267821 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1088_3a-0001	EsuBft1088_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_515 267043..268420 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_515:266874..268420-
coding sequence from alignment at Scaffold_515:266874..268420-

spliced messenger RNA

>EsuBft1088_3a-0001 ID=EsuBft1088_3a-0001|Name=EsuBft1088_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1471bp|location=Sequence derived from alignment at Scaffold_515:266874..268420- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAGCATCAAGACCACCAACAACAGCAACACAATGAACAGCAACAA
CGACATCAGCATGACCGAATTCGTGACGAGCAAGCCCAGCTGCAAGCGCA
CAGGAGAGCCAAACCCTCTTATGTTCAAGGCCGCAGCGAGGAACCTTCGC
GAATACCACGGTGTCCCCAGCATAACACCGGGCGGCCTGGAGACGACCAT
GGTCCTGCTTGAGCTCCGCCCCGCCCGCCTCGTGGCGCAGGGACTTGCCC
CGAAGATACTCCTGAAGGGAAATTCAACTGCTGGCGTTGACGCGGACAGC
ACCGACGGCAGCGGCGGATTCGAAGCCGAGGAAGAGCAGGCGAACAATCA
GTTCTCGCACGACTTGAGCAGCAACAGCAGCGACGGCGGAGACACGGGGA
ACGACAACATCGTCACCCAAAACAGCATCGGCTTCGAGGCCAGAGCCAGC
AAGCACCCCATCCAGGCGGTCTTTGTAGCCGTAGGCGTCCAGCTCCGGCC
CCGCGAAACCAGGCCATTGCTCCGCGGGGTGGTCCTCCTCACCAGCAGCA
CGGTCGCCCTGGAGGTCGTGGCCACCACCACCGCGGCGGAGGTATGGGTA
GGCCTAGTGACCCGCCTCCGCATGGCCCTCCGCCGCACCGTCATGGCCAC
AGTTCTGGAAGGCGTCCTGCTTGCCGTGATCACCGCCGCCCGCCAAGCCC
TACCCACGGACCATCTCCCGGACCGTTGGAAGAAACCGGCGGAGGGCATC
TCCACCACGGACCCAGTCACCACCACCACGACGACGAGAGCGAAGAAGAA
ATGGCGATGCATGCCGGGCGGCGCGGCCCTCCCCACGGACTGCACCCCCC
GCACCTACGCGGACAGCGCGGCCCTCGTCGCCATGGCGACCACCAAATGC
ACCCGTTCCACCACGGACCCGGCCACCACCACCACGGCGGCGAGAGCGAA
GACGAAGAAGAAATGGCGATGCACGCCGGGCCGCGCGGCTCTCCGCACGG
ACTGCACCCCCCGCACCTACGCGGACAGCGCGGCCCTCGTCGCTATGGCG
ACCACCAAATGCACCCGTTCCACCACGGACCCGGCCACCACCACCACGGC
GGCGAGAGCGAAGGCGAAGAAGAAATGGCGATGCACGCCGGGCCGCGCGG
CCCTCCGCACGGACTGCACCCCCCGCACCTACGCGGACATCGCGGCCCTC
GTCGCCACGGCGTGTCCATGCCCGACCGCCAAATGCACCTGCCCCCCCAC
GGATCCCGCCACCACCACCACGGCGAGAGCGAAGGAGAAGAAATGGCCAT
GATGCATGCCGGGCGGCGTGCCCACGGACTGCACCCGCCCCCGAAACTAC
GCGGACAGCGCGGCCCTCGTCGCCTTGGCGACCGCCAAGTGCACCCGTTC
CACCACGGACACAGCGGAGGACGGCACCATCACCGCGGCCCTGCCGGTCT
ACATCAACGCGTGCCCGGCCC

protein sequence of EsuBft1088_3a-0001

>EsuBft1088_3 ID=EsuBft1088_3|Name=EsuBft1088_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=433bp
MDSIKTTNNSNTMNSNNDISMTEFVTSKPSCKRTGEPNPLMFKAAARNLR
EYHGVPSITPGGLETTMVLLELRPARLVAQGLAPKILLKGNSTAGVDADS
TDGSGGFEAEEEQANNQFSHDLSSNSSDGGDTGNDNIVTQNSIGFEARAS
KHPIQAVFVAVGVQLRPRETRPLLRGVVLLTSSTVALEVVATTTAAEVWV
GLVTRLRMALRRTVMATVLEGVLLAVITAARQALPTDHLPDRWKKPAEGI
STTDPVTTTTTTRAKKKWRCMPGGAALPTDCTPRTYADSAALVAMATTKC
TRSTTDPATTTTAARAKTKKKWRCTPGRAALRTDCTPRTYADSAALVAMA
TTKCTRSTTDPATTTTAARAKAKKKWRCTPGRAALRTDCTPRTYADIAAL
VATACPCPTAKCTCPPTDPATTTTARAKEKKWP

mRNA from alignment at Scaffold_515:266874..268420-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1088_3a-0001 ID=EsuBft1088_3a-0001|Name=EsuBft1088_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1547bp|location=Sequence derived from alignment at Scaffold_515:266874..268420- (Ectocarpus subulatus male Bft15b)
ATGGACAGCATCAAGACCACCAACAACAGCAACACAATGAACAGCAACAA
CGACATCAGCATGACCGAATTCGTGACGAGCAAGCCCAGCTGCAAGCGCA
CAGGAGAGCCAAACCCTCTTATGTTCAAGGCCGCAGCGAGGAACCTTCGC
GAATACCACGGTGTCCCCAGCATAACACCGGGCGGCCTGGAGACGACCAT
GGTCCTGCTTGAGCTCCGCCCCGCCCGCCTCGTGGCGCAGGGACTTGCCC
CGAAGATACTCCTGAAGGGAAATTCAACTGCTGGCGTTGACGCGGACAGC
ACCGACGGCAGCGGCGGATTCGAAGCCGAGGAAGAGCAGGCGAACAATCA
GTTCTCGCACGACTTGAGCAGCAACAGCAGCGACGGCGGAGACACGGGGA
ACGACAACATCGTCACCCAAAACAGCATCGGCTTCGAGGCCAGAGCCAGC
AAGCACCCCATCCAGGCGGTCTTTGTAGCCGTAGGCGTCCAGCTCCGGCC
CCGCGAAACCAGGCCATTGCTCCGTGCGCTGGGCGTAGGACCTGAACGCC
TAGTCAAGCTCGGGCTGGTGCAACGCGAAGAGCTTCGGCGATTGGGCAGG
CGGGGTGGTCCTCCTCACCAGCAGCACGGTCGCCCTGGAGGTCGTGGCCA
CCACCACCGCGGCGGAGGTATGGGTAGGCCTAGTGACCCGCCTCCGCATG
GCCCTCCGCCGCACCGTCATGGCCACAGTTCTGGAAGGCGTCCTGCTTGC
CGTGATCACCGCCGCCCGCCAAGCCCTACCCACGGACCATCTCCCGGACC
GTTGGAAGAAACCGGCGGAGGGCATCTCCACCACGGACCCAGTCACCACC
ACCACGACGACGAGAGCGAAGAAGAAATGGCGATGCATGCCGGGCGGCGC
GGCCCTCCCCACGGACTGCACCCCCCGCACCTACGCGGACAGCGCGGCCC
TCGTCGCCATGGCGACCACCAAATGCACCCGTTCCACCACGGACCCGGCC
ACCACCACCACGGCGGCGAGAGCGAAGACGAAGAAGAAATGGCGATGCAC
GCCGGGCCGCGCGGCTCTCCGCACGGACTGCACCCCCCGCACCTACGCGG
ACAGCGCGGCCCTCGTCGCTATGGCGACCACCAAATGCACCCGTTCCACC
ACGGACCCGGCCACCACCACCACGGCGGCGAGAGCGAAGGCGAAGAAGAA
ATGGCGATGCACGCCGGGCCGCGCGGCCCTCCGCACGGACTGCACCCCCC
GCACCTACGCGGACATCGCGGCCCTCGTCGCCACGGCGTGTCCATGCCCG
ACCGCCAAATGCACCTGCCCCCCCACGGATCCCGCCACCACCACCACGGC
GAGAGCGAAGGAGAAGAAATGGCCATGATGCATGCCGGGCGGCGTGCCCA
CGGACTGCACCCGCCCCCGAAACTACGCGGACAGCGCGGCCCTCGTCGCC
TTGGCGACCGCCAAGTGCACCCGTTCCACCACGGACACAGCGGAGGACGG
CACCATCACCGCGGCCCTGCCGGTCTACATCAACGCGTGCCCGGCCC

Coding sequence (CDS) from alignment at Scaffold_515:266874..268420-

>EsuBft1088_3a-0001 ID=EsuBft1088_3a-0001|Name=EsuBft1088_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1302bp|location=Sequence derived from alignment at Scaffold_515:266874..268420- (Ectocarpus subulatus male Bft15b)
ATGGACAGCATCAAGACCACCAACAACAGCAACACAATGAACAGCAACAA
CGACATCAGCATGACCGAATTCGTGACGAGCAAGCCCAGCTGCAAGCGCA
CAGGAGAGCCAAACCCTCTTATGTTCAAGGCCGCAGCGAGGAACCTTCGC
GAATACCACGGTGTCCCCAGCATAACACCGGGCGGCCTGGAGACGACCAT
GGTCCTGCTTGAGCTCCGCCCCGCCCGCCTCGTGGCGCAGGGACTTGCCC
CGAAGATACTCCTGAAGGGAAATTCAACTGCTGGCGTTGACGCGGACAGC
ACCGACGGCAGCGGCGGATTCGAAGCCGAGGAAGAGCAGGCGAACAATCA
GTTCTCGCACGACTTGAGCAGCAACAGCAGCGACGGCGGAGACACGGGGA
ACGACAACATCGTCACCCAAAACAGCATCGGCTTCGAGGCCAGAGCCAGC
AAGCACCCCATCCAGGCGGTCTTTGTAGCCGTAGGCGTCCAGCTCCGGCC
CCGCGAAACCAGGCCATTGCTCCGCGGGGTGGTCCTCCTCACCAGCAGCA
CGGTCGCCCTGGAGGTCGTGGCCACCACCACCGCGGCGGAGGTATGGGTA
GGCCTAGTGACCCGCCTCCGCATGGCCCTCCGCCGCACCGTCATGGCCAC
AGTTCTGGAAGGCGTCCTGCTTGCCGTGATCACCGCCGCCCGCCAAGCCC
TACCCACGGACCATCTCCCGGACCGTTGGAAGAAACCGGCGGAGGGCATC
TCCACCACGGACCCAGTCACCACCACCACGACGACGAGAGCGAAGAAGAA
ATGGCGATGCATGCCGGGCGGCGCGGCCCTCCCCACGGACTGCACCCCCC
GCACCTACGCGGACAGCGCGGCCCTCGTCGCCATGGCGACCACCAAATGC
ACCCGTTCCACCACGGACCCGGCCACCACCACCACGGCGGCGAGAGCGAA
GACGAAGAAGAAATGGCGATGCACGCCGGGCCGCGCGGCTCTCCGCACGG
ACTGCACCCCCCGCACCTACGCGGACAGCGCGGCCCTCGTCGCTATGGCG
ACCACCAAATGCACCCGTTCCACCACGGACCCGGCCACCACCACCACGGC
GGCGAGAGCGAAGGCGAAGAAGAAATGGCGATGCACGCCGGGCCGCGCGG
CCCTCCGCACGGACTGCACCCCCCGCACCTACGCGGACATCGCGGCCCTC
GTCGCCACGGCGTGTCCATGCCCGACCGCCAAATGCACCTGCCCCCCCAC
GGATCCCGCCACCACCACCACGGCGAGAGCGAAGGAGAAGAAATGGCCAT
GA