EsuBft1088_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1088_2a-0001
Unique Name	EsuBft1088_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_515	contig	Scaffold_515:269429..273765 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1088_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	403
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1088_2a	EsuBft1088_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_515 269429..273765 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1088_2a-0001-exon	agat-exon-12163	Ectocarpus subulatus male Bft15b	exon	Scaffold_515 269429..269523 +
EsuBft1088_2a-0001-exon	EsuBft1088_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_515 269823..273765 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1088_2a-0001-cds	EsuBft1088_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_515 269429..269523 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1088_2a-0001-exon	agat-three_prime_utr-819	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_515 269905..273765 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1088_2a-0001	EsuBft1088_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_515 269429..269904 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_515:269429..273765+
coding sequence from alignment at Scaffold_515:269429..273765+

spliced messenger RNA

>EsuBft1088_2a-0001 ID=EsuBft1088_2a-0001|Name=EsuBft1088_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4038bp|location=Sequence derived from alignment at Scaffold_515:269429..273765+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCTACGAAAGGCTTGGTACCCAGAGGGTATGACTCCTCTAGCATC
GACTTTGTACCCCGAGGGTGTGACTCCTCTGGTCCTATACCCGAGGATTG
AGGGGTTCCCATACTCCTTGCGTCATCCTGGAGACAATAATGGAGATGGA
GAGGAAGTTAAGAAACCGGATGAGTAGTGTTGGGAATGTTCGTCGTGTAT
TAGGTGTATGGCGGATGGATCAGCATGGCTTGGATCGGGCAGGTGGCTGG
CGTTGAAGACGGTGTTGATTTGAATGTTGTATCGCAAAGTTGCTGCAACT
ATTTCTGGTTGACCTAAATACGCTGTTGGTGAGACATGATGCTTAGGTAT
TGGTCGTATGATGCATACCTACGGGGTTGTTGTCCGAGGATGTTGAGGTA
TTCGGTATTAATTCCTGTTGAAATAGCAGTTTGAAAGGTTGGGTTGTTTA
GGTTGTCGCTCATGTATTGGACGATTTCGGAGCGCACTAGTATTCCTCGA
CGAGCGCTTGAAACCGCTGGTGTTCCTCGAGTTGGGGGTCGAATGACATG
ATGGGCATCAAACCTGTAGAGACGCGGGGAGAGGATGTGGATGAGGTGTT
AAAACGCAGGAAGAGTAGTGACGGGAATGCGCATTGTAGAGAAGTTGAAT
AGAGGATGGGTCGCTGTCGGTTGGTTGTGGCAGTTGTGATTGTGATAGGG
AAACGTGGATAGGGATATTGTATCGGCGTCTGGCAGCAAAAATTTCAGGT
TCGCCGAGGTATGCTCTGGGGTCGGACATGATTTGGAGGTAGTCGTCATA
CGATGAGTAAAGCCTAGGAGGCTCCCCGAGGATGTGCAGGTATTCTGAGG
CAATTCCTGGAGAAATAGCATTCTGAAAATCAGGATCGTTCCGATTGTCG
CTTATGAAGTGCAGCACTTCAGAGCGTACTTGTAGGTGTCTATCAGGATC
GCCGTATATGTGCCTAGATATGGCGCGGAACCCGCATGCGCCATCGCCGA
TTTCGGGGACAACCGACCAAACGTTTGGCGGTGGTGGCGGCGGAGGATAT
TGGGTCTGGATTTGGGTGGAATTTGTGTCACCGGATGGAGGAGGAGTTTG
ACCAGTGGCGGCATGCGTGAACGGAGCATACACGCAGTTTTGTACGTGAG
CGACATTGTTCAAAACATGATCAGGTGGCACGAGAATCATGACGGAATGC
CTATTCCTCGCTCTTGAGAGCGCAACATACAGCTGGCCGTGAGAAAAGCA
ATCGGAACGCAGATCAAGACCTATTCGCGACAAAGTCTGTCCTTGAGCCT
TATTAATCGTGAGTGAATATGCCAGGCGAATCGGGTACTGCACACGGTTA
AAGGTGATGCCATTTCGACCTACTTGTGCATGGAAAGAAATACGAGGGAT
GAGGACGATGGTGTTGGTCTCATCTAATAATTGCACTTTGATTACACGAG
AATTTGGGGAAACATCTCGAATGACAACTTTCTGGCCGTTAACGAGGCCT
TCTGAAAAGTTCAGATTTCTTATTAGCATTGCAAGAGAATCTGACTGCAG
TTCTAGACGATGGGGGGGAACACCGGGGACGTCAATGTTATTGAGGTTCT
CTGTTGAGCAGAAGGCGGTGGCTGAAGAATTGTTGTGATCTTTAATGAGT
GTGTCTGAACTAGAGAAGGTAACGTGGTTGCCGTTGCGACGCGAAGAAAT
GTCGTCGTTGCATGAGTCGATTGAAATGTTAGTAGTAGCTAATATAGCAC
GGTGATTGAGACGAGTGGCGTCCTCTTGGATGTCGGGATAGACAAAGTTT
ATCAAGTCATTGAAATCGGTAGTATACTGCAAGGAGAATTTATCGGAAGT
TGAAGAGTCGCGATTTGAGAGGGGGACGAGTTTTGCCCCATCTTCAAAGG
TGTTTGTAGGCTGAGTGTCCTCGCCAATGGAACGCACGAAAGCAGCGTAT
GCGGGATCTTCTCTGTCACGTTGGGAAATGGTTAAACGCATACGTTTTGT
CTTTGACCATAGGTCGCTGGAAATGAAGGATGCTTCAACAGTGTCAGCAG
CGGACCCAAATGGCACGACGGGCCCACACTGACGCCAGTCGCCTGAAAAG
CATATGGTGATTCCACCATATAAGGACTGCGAGCCTCTGATGTCGCGTAA
TGAACGTTCTAGAGCTTCGATACAGAATCGGTGCGTCATAGGGAGTTCGT
CGAAAATAATGAGGTCGCATTTGCGAATGAGTTCGGCACGCTGGGATTCG
TTGCTAATGTCACACATGGCGCCATCAACAACGCGCTCGTTCAATGGGAG
TTTAAACATGGAATGGGCGGTCCAACCGCCGGGAAGTTGTAGGGCGGCGA
TGCCTGTAGAAGCTACGATCAAAACAGTAAAACGTTGTCCTCTTAAACGT
GCAGCAATAACTTTTTCTGTGTGAGATTTGCCGGTGCCAGCGGGTGCATC
AATCATGAAGGGCTGTGGATGTTTGTTCCTGACGGCGTCAACAACCGCTG
TGTAAACGTCACGTTGCTCGGATGTTAAGCCATGCTCATATTTATCAGCG
TATTACGCAGTTTGTTCTGAAGTGTTAAATGAAGCGATCATGCGTTGGTA
CTCGGTTTGATGGTGTCTAGGGGCCGGGAGGCCGAGTTGTACATTTGTCT
TGCCGTGTTGATGCAACTTGAGGTCAATAATACGCAGTGCTTGTTCGCAC
GCATCGGTGTTGTCCATCGTACGCGTGAAATCATCTATGAGGTGATCTTT
GTAATCATTCCATAATTTGGACGCGGGGCCGCCATCTAAAATAAGAGTAA
CAACGAGTCCGCGTAGCTGAGACGGCATTTCGAACGTGATTGCCTCCTCC
ATGCATATAAAATATTCTTCTTGTCCAGTGACGTACCCTTGCGCTCTTGC
GGCATCGTGAAATGTAGGGTGTTCGATGGTGACATTGGCAGGAGTGGTGA
CGGTTCGCAAATCAGTGTAAGATCTACCTGGTGTTTTGTGGAGGAGGAGG
CGGAGATAAAAGAGGTCGCCGACAGTGGGAGACGCAAACTTGATGCGACA
GACCTGTGACTTTTTTCTGGCAGAGACGGTGTTACCGTACAAATCCAACC
ATTTGCCAGGCGGAGCGGAAGGTGGAATGGGGTCGTCTTTTTCCTTTCGT
GCAATGGTGTACATCTCGAAATAGTCAAGCACCGTAAGGTTGTTGAATTG
GTCGTGGAGCGGACGCTTGAAGTATCTCATGAGGTCGGATACAGCTTCGT
CAGCGCATTGGCGACGGACCTCGTCTGTGGCATTGGACGGATACATGACG
TTGTTCTCCCCTTCTAGGTGGGCTTGAACAATGGTGACTGCGGGGTCACG
ACTGCGCATTTCATACCCCAACATGCGCCATGTTGCTTCGGACATAGCGA
GTTTTTCTGTATTGTTCAATTTGGCTGGTTCAATTTGGCTGGTGATGCCG
GCACTCGAGCTCTCGATAGATCATGACCTTTTCTGACTTTCCGTGTTGGT
TTTGTGAGATGACGTCGTCACCGGATTTGTAGAGAGACCCGTCAGAGATG
GCGTGGTTAACCCCGGTGCATTGGTTTTGTGCCTGATCGTGGAAGACCCC
TTCAATGTGGAACGATTCTTAGCTATTGTCGATATTTTCACTGCGTGCCT
AACACAGACGATCGGGAGAGGTTCGGGTGATTGTCCATTGCAATCATGGC
TTTGGTTGGTTGTTCTTTTTCACTGTACGTCCGCAGACACATTCTGACAG
CACTTCAGACAGCAGCTTTGTGCCCCGCCAGCTTCTTGTTCCATGCCTAC
CATGGTGTTTTTGTACAGACAGCACTTCAGACAGCAGTATGCTGTAGTCG
GCAATCTTCCGTTTTGGTATAGATAGAGTGGGACAGGGAGGGGGTGATGC
TACTGTAGTCGAACGGTGGGACGGACGTGCAGTTCAGTTTTTGGGCACGC
ATACGGTGCTGCAGGTATTTTTTGGTGTACCTCTTCGGGCTCTTGGACAC
CTTTTTCTCGTTATATGTTTGCGTGTTCTGTAGATCCT

protein sequence of EsuBft1088_2a-0001

>EsuBft1088_2 ID=EsuBft1088_2|Name=EsuBft1088_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=58bp
MTLRKAWYPEGMTPLASTLYPEGVTPLVLYPRIEGFPYSLRHPGDNNGDG
EEVKKPDE

mRNA from alignment at Scaffold_515:269429..273765+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1088_2a-0001 ID=EsuBft1088_2a-0001|Name=EsuBft1088_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4337bp|location=Sequence derived from alignment at Scaffold_515:269429..273765+ (Ectocarpus subulatus male Bft15b)
ATGACTCTACGAAAGGCTTGGTACCCAGAGGGTATGACTCCTCTAGCATC
GACTTTGTACCCCGAGGGTGTGACTCCTCTGGTCCTATACCCGAGGTACA
ATATATAAAGCCTGCAGGCAAGCTACATATAGCCGCAGAGCAGAAGTAAA
GAGTGAGCTACAAATTGGAAAGCAATGCGCACTCGTCTGCGGTGGGGTTT
ATGAACATGAAGTGGAGGTCGGACGGTGGCATTGGGACATTTTCATGTGC
CAATGGTAGAAGTCTGCGCAATAGTCGTCGAACAGAGCTTCGAAATGTTC
GTTGTCGGCGATCTGCGCGTGGAGTGTCTCGTAGCGGCGGTAGTCTTCGG
CGGTGGCGTCGAAGTTCTCGGCGTCGATGATCATGGAGTCATAGGATTGA
GGGGTTCCCATACTCCTTGCGTCATCCTGGAGACAATAATGGAGATGGAG
AGGAAGTTAAGAAACCGGATGAGTAGTGTTGGGAATGTTCGTCGTGTATT
AGGTGTATGGCGGATGGATCAGCATGGCTTGGATCGGGCAGGTGGCTGGC
GTTGAAGACGGTGTTGATTTGAATGTTGTATCGCAAAGTTGCTGCAACTA
TTTCTGGTTGACCTAAATACGCTGTTGGTGAGACATGATGCTTAGGTATT
GGTCGTATGATGCATACCTACGGGGTTGTTGTCCGAGGATGTTGAGGTAT
TCGGTATTAATTCCTGTTGAAATAGCAGTTTGAAAGGTTGGGTTGTTTAG
GTTGTCGCTCATGTATTGGACGATTTCGGAGCGCACTAGTATTCCTCGAC
GAGCGCTTGAAACCGCTGGTGTTCCTCGAGTTGGGGGTCGAATGACATGA
TGGGCATCAAACCTGTAGAGACGCGGGGAGAGGATGTGGATGAGGTGTTA
AAACGCAGGAAGAGTAGTGACGGGAATGCGCATTGTAGAGAAGTTGAATA
GAGGATGGGTCGCTGTCGGTTGGTTGTGGCAGTTGTGATTGTGATAGGGA
AACGTGGATAGGGATATTGTATCGGCGTCTGGCAGCAAAAATTTCAGGTT
CGCCGAGGTATGCTCTGGGGTCGGACATGATTTGGAGGTAGTCGTCATAC
GATGAGTAAAGCCTAGGAGGCTCCCCGAGGATGTGCAGGTATTCTGAGGC
AATTCCTGGAGAAATAGCATTCTGAAAATCAGGATCGTTCCGATTGTCGC
TTATGAAGTGCAGCACTTCAGAGCGTACTTGTAGGTGTCTATCAGGATCG
CCGTATATGTGCCTAGATATGGCGCGGAACCCGCATGCGCCATCGCCGAT
TTCGGGGACAACCGACCAAACGTTTGGCGGTGGTGGCGGCGGAGGATATT
GGGTCTGGATTTGGGTGGAATTTGTGTCACCGGATGGAGGAGGAGTTTGA
CCAGTGGCGGCATGCGTGAACGGAGCATACACGCAGTTTTGTACGTGAGC
GACATTGTTCAAAACATGATCAGGTGGCACGAGAATCATGACGGAATGCC
TATTCCTCGCTCTTGAGAGCGCAACATACAGCTGGCCGTGAGAAAAGCAA
TCGGAACGCAGATCAAGACCTATTCGCGACAAAGTCTGTCCTTGAGCCTT
ATTAATCGTGAGTGAATATGCCAGGCGAATCGGGTACTGCACACGGTTAA
AGGTGATGCCATTTCGACCTACTTGTGCATGGAAAGAAATACGAGGGATG
AGGACGATGGTGTTGGTCTCATCTAATAATTGCACTTTGATTACACGAGA
ATTTGGGGAAACATCTCGAATGACAACTTTCTGGCCGTTAACGAGGCCTT
CTGAAAAGTTCAGATTTCTTATTAGCATTGCAAGAGAATCTGACTGCAGT
TCTAGACGATGGGGGGGAACACCGGGGACGTCAATGTTATTGAGGTTCTC
TGTTGAGCAGAAGGCGGTGGCTGAAGAATTGTTGTGATCTTTAATGAGTG
TGTCTGAACTAGAGAAGGTAACGTGGTTGCCGTTGCGACGCGAAGAAATG
TCGTCGTTGCATGAGTCGATTGAAATGTTAGTAGTAGCTAATATAGCACG
GTGATTGAGACGAGTGGCGTCCTCTTGGATGTCGGGATAGACAAAGTTTA
TCAAGTCATTGAAATCGGTAGTATACTGCAAGGAGAATTTATCGGAAGTT
GAAGAGTCGCGATTTGAGAGGGGGACGAGTTTTGCCCCATCTTCAAAGGT
GTTTGTAGGCTGAGTGTCCTCGCCAATGGAACGCACGAAAGCAGCGTATG
CGGGATCTTCTCTGTCACGTTGGGAAATGGTTAAACGCATACGTTTTGTC
TTTGACCATAGGTCGCTGGAAATGAAGGATGCTTCAACAGTGTCAGCAGC
GGACCCAAATGGCACGACGGGCCCACACTGACGCCAGTCGCCTGAAAAGC
ATATGGTGATTCCACCATATAAGGACTGCGAGCCTCTGATGTCGCGTAAT
GAACGTTCTAGAGCTTCGATACAGAATCGGTGCGTCATAGGGAGTTCGTC
GAAAATAATGAGGTCGCATTTGCGAATGAGTTCGGCACGCTGGGATTCGT
TGCTAATGTCACACATGGCGCCATCAACAACGCGCTCGTTCAATGGGAGT
TTAAACATGGAATGGGCGGTCCAACCGCCGGGAAGTTGTAGGGCGGCGAT
GCCTGTAGAAGCTACGATCAAAACAGTAAAACGTTGTCCTCTTAAACGTG
CAGCAATAACTTTTTCTGTGTGAGATTTGCCGGTGCCAGCGGGTGCATCA
ATCATGAAGGGCTGTGGATGTTTGTTCCTGACGGCGTCAACAACCGCTGT
GTAAACGTCACGTTGCTCGGATGTTAAGCCATGCTCATATTTATCAGCGT
ATTACGCAGTTTGTTCTGAAGTGTTAAATGAAGCGATCATGCGTTGGTAC
TCGGTTTGATGGTGTCTAGGGGCCGGGAGGCCGAGTTGTACATTTGTCTT
GCCGTGTTGATGCAACTTGAGGTCAATAATACGCAGTGCTTGTTCGCACG
CATCGGTGTTGTCCATCGTACGCGTGAAATCATCTATGAGGTGATCTTTG
TAATCATTCCATAATTTGGACGCGGGGCCGCCATCTAAAATAAGAGTAAC
AACGAGTCCGCGTAGCTGAGACGGCATTTCGAACGTGATTGCCTCCTCCA
TGCATATAAAATATTCTTCTTGTCCAGTGACGTACCCTTGCGCTCTTGCG
GCATCGTGAAATGTAGGGTGTTCGATGGTGACATTGGCAGGAGTGGTGAC
GGTTCGCAAATCAGTGTAAGATCTACCTGGTGTTTTGTGGAGGAGGAGGC
GGAGATAAAAGAGGTCGCCGACAGTGGGAGACGCAAACTTGATGCGACAG
ACCTGTGACTTTTTTCTGGCAGAGACGGTGTTACCGTACAAATCCAACCA
TTTGCCAGGCGGAGCGGAAGGTGGAATGGGGTCGTCTTTTTCCTTTCGTG
CAATGGTGTACATCTCGAAATAGTCAAGCACCGTAAGGTTGTTGAATTGG
TCGTGGAGCGGACGCTTGAAGTATCTCATGAGGTCGGATACAGCTTCGTC
AGCGCATTGGCGACGGACCTCGTCTGTGGCATTGGACGGATACATGACGT
TGTTCTCCCCTTCTAGGTGGGCTTGAACAATGGTGACTGCGGGGTCACGA
CTGCGCATTTCATACCCCAACATGCGCCATGTTGCTTCGGACATAGCGAG
TTTTTCTGTATTGTTCAATTTGGCTGGTTCAATTTGGCTGGTGATGCCGG
CACTCGAGCTCTCGATAGATCATGACCTTTTCTGACTTTCCGTGTTGGTT
TTGTGAGATGACGTCGTCACCGGATTTGTAGAGAGACCCGTCAGAGATGG
CGTGGTTAACCCCGGTGCATTGGTTTTGTGCCTGATCGTGGAAGACCCCT
TCAATGTGGAACGATTCTTAGCTATTGTCGATATTTTCACTGCGTGCCTA
ACACAGACGATCGGGAGAGGTTCGGGTGATTGTCCATTGCAATCATGGCT
TTGGTTGGTTGTTCTTTTTCACTGTACGTCCGCAGACACATTCTGACAGC
ACTTCAGACAGCAGCTTTGTGCCCCGCCAGCTTCTTGTTCCATGCCTACC
ATGGTGTTTTTGTACAGACAGCACTTCAGACAGCAGTATGCTGTAGTCGG
CAATCTTCCGTTTTGGTATAGATAGAGTGGGACAGGGAGGGGGTGATGCT
ACTGTAGTCGAACGGTGGGACGGACGTGCAGTTCAGTTTTTGGGCACGCA
TACGGTGCTGCAGGTATTTTTTGGTGTACCTCTTCGGGCTCTTGGACACC
TTTTTCTCGTTATATGTTTGCGTGTTCTGTAGATCCT

Coding sequence (CDS) from alignment at Scaffold_515:269429..273765+

>EsuBft1088_2a-0001 ID=EsuBft1088_2a-0001|Name=EsuBft1088_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=177bp|location=Sequence derived from alignment at Scaffold_515:269429..273765+ (Ectocarpus subulatus male Bft15b)
ATGACTCTACGAAAGGCTTGGTACCCAGAGGGTATGACTCCTCTAGCATC
GACTTTGTACCCCGAGGGTGTGACTCCTCTGGTCCTATACCCGAGGATTG
AGGGGTTCCCATACTCCTTGCGTCATCCTGGAGACAATAATGGAGATGGA
GAGGAAGTTAAGAAACCGGATGAGTAG