EsuBft1088_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1088_10a-0001
Unique Name	EsuBft1088_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_515	contig	Scaffold_515:203667..206055 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4081.Solyc11g062200.1.1
ProteomeId	EsuBft1088_10
Protein domains	IPR013103
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	4
Max annot lvl	35493\|Streptophyta
Length	1767
Evalue	7.82e-40
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta,44UC5@71274\|asterids
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Mitochondrial protein
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0006259
GO	0003676
GO	0005515
EC	3.1
GO	0016779
GO	0004518

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1088_10a	EsuBft1088_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_515 203667..206055 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1088_10a-0001	EsuBft1088_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_515 203667..205944 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1088_10a-0001-exon	agat-exon-12202	Ectocarpus subulatus male Bft15b	exon	Scaffold_515 203667..204214 +
EsuBft1088_10a-0001-exon	agat-exon-12201	Ectocarpus subulatus male Bft15b	exon	Scaffold_515 204389..204481 +
EsuBft1088_10a-0001-exon	agat-exon-12200	Ectocarpus subulatus male Bft15b	exon	Scaffold_515 204852..205325 +
EsuBft1088_10a-0001-exon	EsuBft1088_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_515 205404..206055 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1088_10a-0001-cds	EsuBft1088_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_515 203667..204214 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1088_10a-0001-exon	agat-three_prime_utr-816	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_515 205945..206055 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_515:203667..206055+
coding sequence from alignment at Scaffold_515:203667..206055+

spliced messenger RNA

>EsuBft1088_10a-0001 ID=EsuBft1088_10a-0001|Name=EsuBft1088_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1767bp|location=Sequence derived from alignment at Scaffold_515:203667..206055+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGAGCGCAGGGAGCCGGGGGGAGCGAGGGCCGGAGAGCAGGGCGGA
GCACTCGCAGCGGCGGACCCGCGGGCTGGAGGAGCGGGCTTCCCACTCGC
ATTTGCCACGCTCCTCGCCAACCGGGAAGACGTCGACGTCACGCTGCGAG
ACCAGCGCCCGCCGGAGCAACGCCCTGACCTTCCGCACTGCCAGGCCAGC
GATCTTCGTGTTCCAAAGAGCTACAAAGAGGCCATGGCGTCGGANGGGGG
GAACGGGGGCCGGAGAGCAGGCGGGAGCACTCGCAGCAGTGGACCCGGGG
GCTGCAAGAGCGGGCTTCCCACTCGCATTTGCCACGCTCCTCGCCAACCG
GGAAGACGTCGACGTCACGCTGCGAGACCAGCGCCCGCCGGAGCAACGCC
CTGACCTTCCGCACTGCCAGGCCAGCGATCTTCGTGTTCCAAAGAGCTAC
AAAGAGGCCATGGCGTCGGAGCACCGGCACCTGTGGAGCGACTCTATGCA
AAGGGAGTTTTATGGCTTGTTGGAAGCGGGAACTTTTACTCCGGCGAAGA
TGTTGGCTGCTTTGGCGTGCGAGTTGAACCTCGACTTGTGTCATTTCGAT
ATTGAGCAAGCTTTTGTGCGTTCGGAGTTAGAGGAAGACGTGATGTTGGC
TGCTTTGGCGTGCGAGTTGAACCTCGACTTGTGTCATTTCGATGTTGAGC
AAGCTTTTGTGCGTTCGGAGTTGGAGGAAGACGTGTACATGCGTTTGCCG
CAGGGATGTGGAGCTCTATCAGGAATGATTGTAAAACTAGGCAAGAGTCT
GTATGGCTTAAGACAGGCATCTAGGCAGTGGCATGCAATGCTGAAGAGGT
GTTTGGTGGCGTTAGGTTTCGAGCAGTGCATGGCCGATGCTTGTGTGTTT
CGTTTGATTGAGGATGGATGTGTTGTTTTGATTTTGGTAGCACATTTAGA
TGACATTTTTGCTGTGGGAGAGAGGGAGAGATGTGACAAGTTTGGCGCCG
ACCTTAACAAGTCCGTGCCAGTGAAGAACCTGGGAAAGTTGAGATGGTAT
TCTGGGTTCTTTTACGAGAGGAACGNGAGGGAGAGATGTGACAAGTTTGG
TGCCGACCTTAATGAGTTGACGATTTCTCAGCAGACTTTCACGGATGAGC
TAGCAGCAGAGTATGGAGTAGTGGGAGGTAAGAGCGTTCCGATGTCTTCG
GGGGTGAAGCTTTCTGATTTTGATGCGGATGAGGTGGCGACAGACTTTCC
GTTTCGTGAACTAGTCGAATCTTTGATGTGGCTGGCGACTCAGACTAGGC
CAGATATTGCGAATGCGGTAGCTAGGTATTGCGCATCTCCGAAGCTGGTC
CACTGGAATGCAGCGATGGATATTTTAGGGTGTGCGAGGAGGACGAGTCA
CGTCGGTATTTCGTTTCAGAGAGGTACAGTAGAGGGTTTCAGTTTGCAGG
GGTACGCTGATGCGGACTTTGCAAGCAAGGCAGCAGACCGTAGGTCGGTA
TCAGGGGGGATCGTCACGTGTGGAGGAGGCGCCGTGTCTTGGTTTTCCAG
AACGCAGAAGTGTGTTACGCTTTCGACGACAGAAACAGAGTACGTCGCGC
TTGGTGACGTAGTGAAGGAGGTTTTGTTTTTGAGGCAAATTTGGCGTTTC
GTGTAGCCGCAGGTCGGCATGCCGTGCATCACAGTGAGGACAACCAGGGG
GCGATTCAACTAGCGCAGAACCCCATCTCAAACTCGAACTCGAAGCACAT
AGATGTAAGGCACCATT

protein sequence of EsuBft1088_10a-0001

>EsuBft1088_10 ID=EsuBft1088_10|Name=EsuBft1088_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=551bp
MRSAGSRGERGPESRAEHSQRRTRGLEERASHSHLPRSSPTGKTSTSRCE
TSARRSNALTFRTARPAIFVFQRATKRPWRRXGGTGAGEQAGALAAVDPG
AARAGFPLAFATLLANREDVDVTLRDQRPPEQRPDLPHCQASDLRVPKSY
KEAMASEHRHLWSDSMQREFYGLLEAGTFTPAKMLAALACELNLDLCHFD
IEQAFVRSELEEDVMLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLP
QGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVF
RLIEDGCVVLILVAHLDDIFAVGERERCDKFGADLNKSVPVKNLGKLRWY
SGFFYERNXRERCDKFGADLNELTISQQTFTDELAAEYGVVGGKSVPMSS
GVKLSDFDADEVATDFPFRELVESLMWLATQTRPDIANAVARYCASPKLV
HWNAAMDILGCARRTSHVGISFQRGTVEGFSLQGYADADFASKAADRRSV
SGGIVTCGGGAVSWFSRTQKCVTLSTTETEYVALGDVVKEVLFLRQIWRF
V

mRNA from alignment at Scaffold_515:203667..206055+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1088_10a-0001 ID=EsuBft1088_10a-0001|Name=EsuBft1088_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2389bp|location=Sequence derived from alignment at Scaffold_515:203667..206055+ (Ectocarpus subulatus male Bft15b)
ATGAGGAGCGCAGGGAGCCGGGGGGAGCGAGGGCCGGAGAGCAGGGCGGA
GCACTCGCAGCGGCGGACCCGCGGGCTGGAGGAGCGGGCTTCCCACTCGC
ATTTGCCACGCTCCTCGCCAACCGGGAAGACGTCGACGTCACGCTGCGAG
ACCAGCGCCCGCCGGAGCAACGCCCTGACCTTCCGCACTGCCAGGCCAGC
GATCTTCGTGTTCCAAAGAGCTACAAAGAGGCCATGGCGTCGGANGGGGG
GAACGGGGGCCGGAGAGCAGGCGGGAGCACTCGCAGCAGTGGACCCGGGG
GCTGCAAGAGCGGGCTTCCCACTCGCATTTGCCACGCTCCTCGCCAACCG
GGAAGACGTCGACGTCACGCTGCGAGACCAGCGCCCGCCGGAGCAACGCC
CTGACCTTCCGCACTGCCAGGCCAGCGATCTTCGTGTTCCAAAGAGCTAC
AAAGAGGCCATGGCGTCGGAGCACCGGCACCTGTGGAGCGACTCTATGCA
AAGGGAGTTTTATGGCTTGTTGGAAGCGGGAACTTTTACTCCGGCGAAGT
AGCAATTAGTGGAGAACGCAATTAACGCTAAGTGGGTATTCGATTGGAAG
GCAGATGAGTTTGGATGGCCCACTAAGGTTAAGTCGAGACTTGTAGCGAG
AGGTGATATGCAGAGAGAGTACATTGACTTTGGAGAGTTGTACGCGCCTA
CCGTTTCTGTTTCATGTGTTAGGATGTTGGCTGCTTTGGCGTGCGAGTTG
AACCTCGACTTGTGTCATTTCGATATTGAGCAAGCTTTTGTGCGTTCGGA
GTTAGAGGAAGACGTGTACATGCGTTTGCCGCAGGGATGTGGAGCTTTAT
CTGGAATGATTGTAAAACTAGGCAAGAGTCTATATGGCTTGAGACAGGCA
TCTAGGCAGTGGCATGCAATGCTGACGAAGTGTTTGGTGTTGTTAGGTTT
CGAGCAGTGCATGGCCGATGCTTGTGTGTTTCGTTTGATTGAGGATGGAT
GTGTTGTTTTGATTTTGGTAGCACATTNAACGCAATTAACGCTTAGTGGG
TATTCGATTGGAAGGCAGATGAGTTTGGATGGCCCACTATGCTAAGTCGA
GACTTGTAGCGAGAGGTGACATACAGAGAGAGTACATTGACTTTGGAGAG
TTGTACGCGCCTACCGTTTCTGTTTCATGTGTTAGGATGTTGGCTGCTTT
GGCGTGCGAGTTGAACCTCGACTTGTGTCATTTCGATGTTGAGCAAGCTT
TTGTGCGTTCGGAGTTGGAGGAAGACGTGTACATGCGTTTGCCGCAGGGA
TGTGGAGCTCTATCAGGAATGATTGTAAAACTAGGCAAGAGTCTGTATGG
CTTAAGACAGGCATCTAGGCAGTGGCATGCAATGCTGAAGAGGTGTTTGG
TGGCGTTAGGTTTCGAGCAGTGCATGGCCGATGCTTGTGTGTTTCGTTTG
ATTGAGGATGGATGTGTTGTTTTGATTTTGGTAGCACATTTAGATGACAT
TTTTGCTGTGGGAGAGAGGGAGAGATGTGACAAGTTTGGCGCCGACCTTA
ACAAGTCCGTGCCAGTGAAGAACCTGGGAAAGTTGAGATGGTATTCTGGG
TTCTTTTACGAGAGGAACGNGAGGGAGAGATGTGACAAGTTTGGTGCCGA
CCTTAATGAGTCCGTGCCAGTGAAGAACCTGGGAGAGTTGAGATGATATT
CTGGGTGCTTTTCCGAGAGGAAGAAGGAGATCGGTAGGTTGACGATTTCT
CAGCAGACTTTCACGGATGAGCTAGCAGCAGAGTATGGAGTAGTGGGAGG
TAAGAGCGTTCCGATGTCTTCGGGGGTGAAGCTTTCTGATTTTGATGCGG
ATGAGGTGGCGACAGACTTTCCGTTTCGTGAACTAGTCGAATCTTTGATG
TGGCTGGCGACTCAGACTAGGCCAGATATTGCGAATGCGGTAGCTAGGTA
TTGCGCATCTCCGAAGCTGGTCCACTGGAATGCAGCGATGGATATTTTAG
GGTGTGCGAGGAGGACGAGTCACGTCGGTATTTCGTTTCAGAGAGGTACA
GTAGAGGGTTTCAGTTTGCAGGGGTACGCTGATGCGGACTTTGCAAGCAA
GGCAGCAGACCGTAGGTCGGTATCAGGGGGGATCGTCACGTGTGGAGGAG
GCGCCGTGTCTTGGTTTTCCAGAACGCAGAAGTGTGTTACGCTTTCGACG
ACAGAAACAGAGTACGTCGCGCTTGGTGACGTAGTGAAGGAGGTTTTGTT
TTTGAGGCAAATTTGGCGTTTCGTGTAGCCGCAGGTCGGCATGCCGTGCA
TCACAGTGAGGACAACCAGGGGGCGATTCAACTAGCGCAGAACCCCATCT
CAAACTCGAACTCGAAGCACATAGATGTAAGGCACCATT

Coding sequence (CDS) from alignment at Scaffold_515:203667..206055+

>EsuBft1088_10a-0001 ID=EsuBft1088_10a-0001|Name=EsuBft1088_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1656bp|location=Sequence derived from alignment at Scaffold_515:203667..206055+ (Ectocarpus subulatus male Bft15b)
ATGAGGAGCGCAGGGAGCCGGGGGGAGCGAGGGCCGGAGAGCAGGGCGGA
GCACTCGCAGCGGCGGACCCGCGGGCTGGAGGAGCGGGCTTCCCACTCGC
ATTTGCCACGCTCCTCGCCAACCGGGAAGACGTCGACGTCACGCTGCGAG
ACCAGCGCCCGCCGGAGCAACGCCCTGACCTTCCGCACTGCCAGGCCAGC
GATCTTCGTGTTCCAAAGAGCTACAAAGAGGCCATGGCGTCGGANGGGGG
GAACGGGGGCCGGAGAGCAGGCGGGAGCACTCGCAGCAGTGGACCCGGGG
GCTGCAAGAGCGGGCTTCCCACTCGCATTTGCCACGCTCCTCGCCAACCG
GGAAGACGTCGACGTCACGCTGCGAGACCAGCGCCCGCCGGAGCAACGCC
CTGACCTTCCGCACTGCCAGGCCAGCGATCTTCGTGTTCCAAAGAGCTAC
AAAGAGGCCATGGCGTCGGAGCACCGGCACCTGTGGAGCGACTCTATGCA
AAGGGAGTTTTATGGCTTGTTGGAAGCGGGAACTTTTACTCCGGCGAAGA
TGTTGGCTGCTTTGGCGTGCGAGTTGAACCTCGACTTGTGTCATTTCGAT
ATTGAGCAAGCTTTTGTGCGTTCGGAGTTAGAGGAAGACGTGATGTTGGC
TGCTTTGGCGTGCGAGTTGAACCTCGACTTGTGTCATTTCGATGTTGAGC
AAGCTTTTGTGCGTTCGGAGTTGGAGGAAGACGTGTACATGCGTTTGCCG
CAGGGATGTGGAGCTCTATCAGGAATGATTGTAAAACTAGGCAAGAGTCT
GTATGGCTTAAGACAGGCATCTAGGCAGTGGCATGCAATGCTGAAGAGGT
GTTTGGTGGCGTTAGGTTTCGAGCAGTGCATGGCCGATGCTTGTGTGTTT
CGTTTGATTGAGGATGGATGTGTTGTTTTGATTTTGGTAGCACATTTAGA
TGACATTTTTGCTGTGGGAGAGAGGGAGAGATGTGACAAGTTTGGCGCCG
ACCTTAACAAGTCCGTGCCAGTGAAGAACCTGGGAAAGTTGAGATGGTAT
TCTGGGTTCTTTTACGAGAGGAACGNGAGGGAGAGATGTGACAAGTTTGG
TGCCGACCTTAATGAGTTGACGATTTCTCAGCAGACTTTCACGGATGAGC
TAGCAGCAGAGTATGGAGTAGTGGGAGGTAAGAGCGTTCCGATGTCTTCG
GGGGTGAAGCTTTCTGATTTTGATGCGGATGAGGTGGCGACAGACTTTCC
GTTTCGTGAACTAGTCGAATCTTTGATGTGGCTGGCGACTCAGACTAGGC
CAGATATTGCGAATGCGGTAGCTAGGTATTGCGCATCTCCGAAGCTGGTC
CACTGGAATGCAGCGATGGATATTTTAGGGTGTGCGAGGAGGACGAGTCA
CGTCGGTATTTCGTTTCAGAGAGGTACAGTAGAGGGTTTCAGTTTGCAGG
GGTACGCTGATGCGGACTTTGCAAGCAAGGCAGCAGACCGTAGGTCGGTA
TCAGGGGGGATCGTCACGTGTGGAGGAGGCGCCGTGTCTTGGTTTTCCAG
AACGCAGAAGTGTGTTACGCTTTCGACGACAGAAACAGAGTACGTCGCGC
TTGGTGACGTAGTGAAGGAGGTTTTGTTTTTGAGGCAAATTTGGCGTTTC
GTGTAG