EsuBft1087_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1087_4a-0001
Unique Name	EsuBft1087_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_636	contig	Scaffold_636:648024..653827 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G873
ProteomeId	EsuBft1087_4
Protein domains	SSF56672
Protein domains	PTHR19446
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	rna-directed dna polymerase from mobile element jockey os:drosophila funebris gn:jockey\pol pe: [Automatic annotation]
Nb exon	5
Max annot lvl	2759\|Eukaryota
Length	1194
Evalue	6.67e-90
EggNOG OGs	COG0553@1\|root,COG2940@1\|root,COG5076@1\|root,KOG1075@1\|root,KOG0383@2759\|Eukaryota,KOG0384@2759\|Eukaryota,KOG1075@2759\|Eukaryota,KOG1081@2759\|Eukaryota,KOG1474@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
KEGG rclass	RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG ko	ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG Reaction	R00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathway	ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG Module	M00089
EC	2.1.1.43,2.3.1.15,3.6.4.12
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036

Cross References

External references for this mRNA


Database	Accession
GO	0006259
EC	3.1
GO	0004518
GO	0016740

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1087_4a	EsuBft1087_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_636 648024..653827 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1087_4a-0001	EsuBft1087_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_636 648024..653827 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1087_4a-0001-exon	agat-exon-67832	Ectocarpus subulatus male Bft15b	exon	Scaffold_636 648024..648063 +
EsuBft1087_4a-0001-exon	agat-exon-67833	Ectocarpus subulatus male Bft15b	exon	Scaffold_636 652254..652479 +
EsuBft1087_4a-0001-exon	agat-exon-67831	Ectocarpus subulatus male Bft15b	exon	Scaffold_636 652520..652886 +
EsuBft1087_4a-0001-exon	EsuBft1087_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_636 652946..653188 +
EsuBft1087_4a-0001-exon	agat-exon-67830	Ectocarpus subulatus male Bft15b	exon	Scaffold_636 653510..653827 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1087_4a-0001-cds	EsuBft1087_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_636 648024..648063 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_636:648024..653827+
coding sequence from alignment at Scaffold_636:648024..653827+

spliced messenger RNA

>EsuBft1087_4a-0001 ID=EsuBft1087_4a-0001|Name=EsuBft1087_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1194bp|location=Sequence derived from alignment at Scaffold_636:648024..653827+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGATTTGCATCGCGAACATGATAGAAACAGAGAAGTGGGAGTATT
GGAGAAGGAACATAGCATTAGTGAGGTCAAGGCAGGTTTCCGAAAGAAGA
GGGGGTGCGTAGACCACGTATTCACGGTAGGGAGAATCATCCAAGGTAGA
AAGAGGGCGGGAAAGCCGACGTACTGCTTCTTCCTGGACGTGAAAAAGGC
ATACGACACCGTATGGAGAAATGGGTTGTGGAAACAACTGTCCAAATACG
GGATCGAGGGGAAAGTCGCGGTCATGCTAGACGGAGAACGGTCTAAATTC
TTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCAACATT
GTTCCAGGTGTTCATCAGCGATCTTTTGGAAGTCGCAGAGGCAGTCAGGA
AGGGAGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGGAATGCTGTTT
GCGGATGATTTTTTCGGTATGTCGGACACCCCTGAGGGACTGCAACTGCA
AATTGACGCGGCGAAGAAGTTTACTGATAAGTGGATACTGTCTGCCAACG
TTCAGAAGAGTGCCGTCATGGTATGCAACGAGAACCAGAAGGAACTAGTA
GAAGATAGAGGGAAGTGGGGGATCGGGATTGCAAGCGCCGTCATGGTATG
CAACGAGAACAAGGAGGGACCAGTTGAAAATAGATGGAAGTGGGGGATCG
AGGAGATTGCAGAAGTGGACCAGTGCACATACCTCGGAGTAGAGATCGCA
AAAGACTGCTCGTGGAATGCACACATGTCCAAGGTGGCGGAAAAGNGCAA
GAAGAAGGAGAAGAAGACATTTGCACCGCCGGCCGCTACCAGCGAGAAGA
AGAAGGAAAAGAAGAAGACCGCGGAGGAGGAGCTATATGTTGCTTGTGCC
CAGAGAGAACAGAATCTAAGGAAAGAATCCAAGGATGAGGAGGGTCTAGA
AGTGTACGGCATGTTGAAGGAAGGAATAGAGTTCAAGGACTACCTACATG
GACCAATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGAC
ATAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGA
CGACGAGTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATG
TAGTCGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTAN

protein sequence of EsuBft1087_4a-0001

>EsuBft1087_4 ID=EsuBft1087_4|Name=EsuBft1087_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=398bp
MEDLHREHDRNREVGVLEKEHSISEVKAGFRKKRGCVDHVFTVGRIIQGR
KRAGKPTYCFFLDVKKAYDTVWRNGLWKQLSKYGIEGKVAVMLDGERSKF
FDIEQGVPQGCTLSPTLFQVFISDLLEVAEAVRKGVKVGDTETSVSGMLF
ADDFFGMSDTPEGLQLQIDAAKKFTDKWILSANVQKSAVMVCNENQKELV
EDRGKWGIGIASAVMVCNENKEGPVENRWKWGIEEIAEVDQCTYLGVEIA
KDCSWNAHMSKVAEKXKKKEKKTFAPPAATSEKKKEKKKTAEEELYVACA
QREQNLRKESKDEEGLEVYGMLKEGIEFKDYLHGPMDAGTKLKVKFRTGD
IGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVX

mRNA from alignment at Scaffold_636:648024..653827+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1087_4a-0001 ID=EsuBft1087_4a-0001|Name=EsuBft1087_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5804bp|location=Sequence derived from alignment at Scaffold_636:648024..653827+ (Ectocarpus subulatus male Bft15b)
ATGGAGGATTTGCATCGCGAACATGATAGAAACAGAGAAGGTAAAGAGAC
AAGAGGCGAGGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TCGAAAAGGGGGCCCGCAACTCGTATCTCAAGGTCTCTCCTAGCCGACCC
TCAAGGCAATCCCATCTGCGGTACACGAAACCGCCAGTGATTTGGTACAA
TCCGACTAATCTACCTCCACGCACGAACACCCTCCCTTGGTTCTTTACGC
CAGTGAATAACCACCATTCGTTCGTCGAAGAGTACATCCGAAAAGCACCT
AAAACAACGCAAATTAGAAACAAGGGGAAACCCGCCATCGGATNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNGATAGTGGGAGTATTGGAGAAGGAA
CATAGCATTAGTGAGGTCAAGGCAGGTTTCCGAAAGAAGAGGGGGTGCGT
AGACCACGTATTCACGGTAGGGAGAATCATCCAAGGTAGAAAGAGGGCGG
GAAAGCCGACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGACACC
GTATGGAGAAATGGGTTGTGGAAACAACTGTCCAAATACGGGATCGAGGG
GAAAGTGTTGAGAGTGCTGAAGACGATGACAAGATTGTACGAAAAGCGCG
GTCATGCTAGACGGAGAACGGTCTAAATTCTTCGACATTGAGCAGGGGGT
CCCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAGCG
ATCTTTTGGAAGTCGCAGAGGCAGTCAGGAAGGGAGTAAAAGTAGGGGAC
ACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGGATGATTTTTTCGGTAT
GTCGGACACCCCTGAGGGACTGCAACTGCAAATTGACGCGGCGAAGAAGT
TTACTGATAAGTGGATACTGTCTGCCAACGTTCAGAAGAGTGCCGTCATG
GTATGCAACGAGAACCAGAAGGAACTAGTAGAAGATAGAGGGAAGTGGGG
GATCGGGATTGCAGTAGTGGACCAGCACACATACCTCGGAGTANACGAGA
TTGCCTGCCGACGTTAAAGAAGAGCGCCGTCATGGTATGCAACGAGAACA
AGGAGGGACCAGTTGAAAATAGATGGAAGTGGGGGATCGAGGAGATTGCA
GAAGTGGACCAGTGCACATACCTCGGAGTAGAGATCGCAAAAGACTGCTC
GTGGAATGCACACATGTCCAAGGTGGCGGAAAAGNGCAAGAAGAAGGAGA
AGAAGACATTTGCACCGCCGGCCGCTACCAGCGAGAAGAAGAAGGAAAAG
AAGAAGACCGCGGAGGTGACACGCAAGAAAAGTAGTTGTGGTATCGCCCT
GTCTCTTATACACATCTAGATGTGTATAAGAGACAGGCCGTGAGGGCAGA
ATTGGGGATCCAATACGGTCGGAAAGGGATGCGAGGAAGCTGACATACAT
GGCAGTATCGCATGTGCGGGATGGGAAAGGAAGGTTGCCGAGAATTGTAT
GGGAGGTGAAGTGGGCAAACAAAAAGAGGGGTAGACAACCCACGGAATGG
GTCAAGGTTGTAGAGGACGTCTGGAAGGGGCTCGAGATCGACGAAGATGA
AACGCTGGAAACGGACAGTCTACAGGGACTCAACAGGAGGAGCTATATGT
TGCTTGTGCCCAGAGAGAACAGAATCTAAGGAAAGAATCCAAGGATGAGG
AGGGTCTAGAAGTGTACGGCATGTTGAAGGAAGGAATAGAGTTCAAGGAC
TACCTACATGGACCAATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAG
GACCGGGGACATAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAG
ACGAGGAAGACGACGAGTTCAAATGTGATTGCGGCTTCGAATGCGAAGAC
CGTGTTCATGTAGTCGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGT
GTAN

Coding sequence (CDS) from alignment at Scaffold_636:648024..653827+

>EsuBft1087_4a-0001 ID=EsuBft1087_4a-0001|Name=EsuBft1087_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1194bp|location=Sequence derived from alignment at Scaffold_636:648024..653827+ (Ectocarpus subulatus male Bft15b)
ATGGAGGATTTGCATCGCGAACATGATAGAAACAGAGAAGTGGGAGTATT
GGAGAAGGAACATAGCATTAGTGAGGTCAAGGCAGGTTTCCGAAAGAAGA
GGGGGTGCGTAGACCACGTATTCACGGTAGGGAGAATCATCCAAGGTAGA
AAGAGGGCGGGAAAGCCGACGTACTGCTTCTTCCTGGACGTGAAAAAGGC
ATACGACACCGTATGGAGAAATGGGTTGTGGAAACAACTGTCCAAATACG
GGATCGAGGGGAAAGTCGCGGTCATGCTAGACGGAGAACGGTCTAAATTC
TTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCAACATT
GTTCCAGGTGTTCATCAGCGATCTTTTGGAAGTCGCAGAGGCAGTCAGGA
AGGGAGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGGAATGCTGTTT
GCGGATGATTTTTTCGGTATGTCGGACACCCCTGAGGGACTGCAACTGCA
AATTGACGCGGCGAAGAAGTTTACTGATAAGTGGATACTGTCTGCCAACG
TTCAGAAGAGTGCCGTCATGGTATGCAACGAGAACCAGAAGGAACTAGTA
GAAGATAGAGGGAAGTGGGGGATCGGGATTGCAAGCGCCGTCATGGTATG
CAACGAGAACAAGGAGGGACCAGTTGAAAATAGATGGAAGTGGGGGATCG
AGGAGATTGCAGAAGTGGACCAGTGCACATACCTCGGAGTAGAGATCGCA
AAAGACTGCTCGTGGAATGCACACATGTCCAAGGTGGCGGAAAAGNGCAA
GAAGAAGGAGAAGAAGACATTTGCACCGCCGGCCGCTACCAGCGAGAAGA
AGAAGGAAAAGAAGAAGACCGCGGAGGAGGAGCTATATGTTGCTTGTGCC
CAGAGAGAACAGAATCTAAGGAAAGAATCCAAGGATGAGGAGGGTCTAGA
AGTGTACGGCATGTTGAAGGAAGGAATAGAGTTCAAGGACTACCTACATG
GACCAATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGAC
ATAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGA
CGACGAGTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATG
TAGTCGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTAN