EsuBft1087_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1087_2a-0001
Unique NameEsuBft1087_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_636contigScaffold_636:614961..619544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FRV4
ProteomeIdEsuBft1087_2
Protein domainsPTHR31543
Protein domainsCoil
Protein domainsIPR025593
Ownerapollo_admin@sb-roscoff.fr
Notegrowth arrest-specific protein 8 homolog os:chlamydomonas reinhardtii gn:gas8 pe:1 sv:1 [Automatic annotation]
Nb exon8
Max annot lvl2759|Eukaryota
Length1035
Hectar predicted targeting categoryother localisation
Evalue1.39e-196
EggNOG OGs2BXFH@1|root,2QQDA@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameGAS8
KEGG koko:K19942
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0003351,GO:0003355,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005815,GO:0005856,GO:0005874,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008285,GO:0008589,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0012505,GO:0015630,GO:0015631,GO:0016043,GO:0017016,GO:0017137,GO:0019899,GO:0022607,GO:0023051,GO:0023056,GO:0030030,GO:0030031,GO:0030154,GO:0030317,GO:0031267,GO:0031514,GO:0032474,GO:0032475,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032880,GO:0033036,GO:0034613,GO:0035082,GO:0035889,GO:0036064,GO:0036126,GO:0040011,GO:0042127,GO:0042471,GO:0042472,GO:0042692,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043393,GO:0043583,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045880,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048583,GO:0048584,GO:0048598,GO:0048646,GO:0048731,GO:0048839,GO:0048840,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0051020,GO:0051098,GO:0051179,GO:0051641,GO:0051674,GO:0055001,GO:0060271,GO:0060285,GO:0060294,GO:0060322,GO:0060341,GO:0061061,GO:0065007,GO:0065009,GO:0070727,GO:0070925,GO:0071840,GO:0090596,GO:0097014,GO:0097223,GO:0097722,GO:0097729,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1903564,GO:1903566,GO:1903827,GO:1903829,GO:1904526
Descriptionpositive regulation of protein localization to cilium
COG categoryS
BRITEko00000,ko04131
Cross References
External references for this mRNA
DatabaseAccession
GO0030317
GO0034613
GO0004571
GO0008285
GO0017137
GO0005874
GO0031514
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1087_2aEsuBft1087_2aEctocarpus subulatus male Bft15bgeneScaffold_636 614961..619544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1087_2a-0001EsuBft1087_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_636 614961..619544 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1087_2a-0001-exonagat-exon-67809Ectocarpus subulatus male Bft15bexonScaffold_636 614961..615149 -
EsuBft1087_2a-0001-exonagat-exon-67812Ectocarpus subulatus male Bft15bexonScaffold_636 616048..616170 -
EsuBft1087_2a-0001-exonagat-exon-67807Ectocarpus subulatus male Bft15bexonScaffold_636 616742..616843 -
EsuBft1087_2a-0001-exonEsuBft1087_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_636 617350..617526 -
EsuBft1087_2a-0001-exonagat-exon-67808Ectocarpus subulatus male Bft15bexonScaffold_636 617820..617940 -
EsuBft1087_2a-0001-exonagat-exon-67813Ectocarpus subulatus male Bft15bexonScaffold_636 618256..618335 -
EsuBft1087_2a-0001-exonagat-exon-67810Ectocarpus subulatus male Bft15bexonScaffold_636 618866..618973 -
EsuBft1087_2a-0001-exonagat-exon-67811Ectocarpus subulatus male Bft15bexonScaffold_636 619410..619544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1087_2a-0001-cdsEsuBft1087_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_636 614961..615149 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1087_2a-0001 ID=EsuBft1087_2a-0001|Name=EsuBft1087_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1035bp|location=Sequence derived from alignment at Scaffold_636:614961..619544- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGTATCATTATCGTTCGCCGCACGAAAGTTGAACTATTTCTGGAT
AGTTGAGAAGAAAAACTTGGAAGACAAGCGGGCAGAGCTACGCAACAAGG
AGAGGGAGCTGCAGGACATCGAGGAGAAGCATCAGGTAGAAATCAAAATC
TACAAGCAGCGCGTAAAGCATCTCCTGTACGAGCAGCAGGATGACGTCAC
CGCCAAGAAGATGTCGGCGGAGGTGTCTCTGAAGCTTGCCCAGGACGCAC
ACCGAGAAGAAGAGAGGGAATTGAAAGTGGACAGGAGGGGGCTCAGGCTC
GGGGCAAAGGAAATGGGACTGAGTCACGAGGCGTACCTGATGACGCTGAA
GCAGCAGCAAGACCGGAACATCACGATGCTCAAGACGGAATTCGAGAGGA
AGGCCGGGGAAGTGCACAAGATATTTGAGAAGGCCATGAAAACGGTCCGG
GAACGGCTTGACGCAGCGAGAAAAGCGGAGACGGCGAAGATCGAGGAGCG
AAAAAACTCCCACATCGAGCGGCTCATGAAGGCGCATGAGAAGGCCTTCG
CTGAGATCAAGAACTACTACAACGACATCACGCACAACAACCTCGACCTC
ATCCGTTCCCTCAAGGAGGAGGTCGCCGACATGAGAAAGCGGGAACAGCA
GGACGAGAAGCTCATGTACGAGATCGCCCAGGAAAACAAGAAGATGTCGG
AGCCGCTCAGGAAGGCCCGACAGGACGTGGAGAGGCTTCGGCAAGAGCTA
GAACGGTATCGACAGGAGCAGGAACAGCTGAGACAGACTAAGGCCAGGGT
GCTCGTTATGGAGGAGCGACTCCGGGACCTTCACTGGGAAGACGAGGTGC
TGGGCCAGCGGTTCGCGATAGTCAGTCGAGAGCGGGACCAGCTGAGGGAC
CGTTTCCAGGACTCTGTCAAGCAGGCTCAGCAAAAGTCGGGCTTCCGGAA
TCTCATCCTCGAGAGGAAGCTCGGGGGGCTTGCAGAGGAGGCTGAGAAAA
GAGACGCGTGCGTTAACGAGGTCGGTGGGGAGTGA
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protein sequence of EsuBft1087_2a-0001

>EsuBft1087_2 ID=EsuBft1087_2|Name=EsuBft1087_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=344bp
MCVSLSFAARKLNYFWIVEKKNLEDKRAELRNKERELQDIEEKHQVEIKI
YKQRVKHLLYEQQDDVTAKKMSAEVSLKLAQDAHREEERELKVDRRGLRL
GAKEMGLSHEAYLMTLKQQQDRNITMLKTEFERKAGEVHKIFEKAMKTVR
ERLDAARKAETAKIEERKNSHIERLMKAHEKAFAEIKNYYNDITHNNLDL
IRSLKEEVADMRKREQQDEKLMYEIAQENKKMSEPLRKARQDVERLRQEL
ERYRQEQEQLRQTKARVLVMEERLRDLHWEDEVLGQRFAIVSRERDQLRD
RFQDSVKQAQQKSGFRNLILERKLGGLAEEAEKRDACVNEVGGE
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mRNA from alignment at Scaffold_636:614961..619544-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1087_2a-0001 ID=EsuBft1087_2a-0001|Name=EsuBft1087_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4584bp|location=Sequence derived from alignment at Scaffold_636:614961..619544- (Ectocarpus subulatus male Bft15b)
ATGTGTGTATCATTATCGTTCGCCGCACGAAAGTTGAACTATTTCTGGAT
AGTTGAGAAGAAAAACTTGGAAGACAAGCGGGCAGAGCTACGCAACAAGG
AGAGGGAGCTGCAGGACATCGAGGAGAAGCATCAGGTACAGGACGGGCAT
ACGATCAGGGAGGCGTATTAGGTATGGTATCACGTGAAGCTTGCAACGCA
CCATGCCTCAAGCGTTTTATCCTGGAGGTAATCCAGAGTTGATGTTTGAG
CCGTTGGTGGTGGTGTCGTTGATATCTTTTATATAATTATACCTTCCACG
AAACTTGCACTTGATGGTTGATGATGGACGACACCCCGGCGTGCACGGAC
ACACGAAATCTGAGTAATACAACGATGGGGACAATGCCTGCAAGAATGGA
GCTACGGTTTTCTCCCGAAGAGATTGATGGTAGTCGAACACGTGTTTCAG
CTGCCGCATCGACTCAGAGAAATCCCTGTAGTTTATGACTTGTCGTCATC
CTCGCCTACCTGCCATCCAACCGCTCTCGATGTTGTCCTTCGCGACTGTC
TGCATCTGCCGGACCGAATAGGTAGAAATCAAAATCTACAAGCAGCGCGT
AAAGCATCTCCTGTACGAGCAGCAGGATGACGTCACCGCCAAGAAGATGT
CGGCGGAGGTGTCTCTGAAGCTTGCCCAGGTAAGAAAAAACACGAGGTGA
CCGTCTGCACGCGCTGTTGCTATGCCCGCACCTGCCGCTGCTATACCCTG
ACGCCACCGCTGCGACGTGGGTACTGGCGCCCGAACAAACACCGATAGAA
TTTTGACTTTCTCTGCATACTTCTTCGCTAAGTTAGCTTTCGCCCAAATG
CTGTGACGCCCGTTGAATATTGGCTGTCGTGCTGTCCATGCGATAGGAAA
CAGTGTCTATACCACTATTCTATTCTGCAACGGCTGGCGGGGGCTGAGGA
AGCTCCGAAAACATTGTAATAGCTTGTGCCTTCCCGTCAACGTAGAATTC
TCCCAAAAATGCTGCTGGGATAAGACAAACGTGACAACATCGCCAAGAGG
CAGTACCTGAAGCAGTAACAACGGCATGACTGGTGTGGCGAACTCCTCTG
GCAGACGCAAATCTCCGCGCTTGTAACTTGGGGATAGGGTTTGGGCTAGG
GTCCCACAACCGATGAAGAGCTAAAACTCTTGTTGCATGACCTGGGCTGG
CCCGAGCAGGACGCACACCGAGAAGAAGAGAGGGAATTGAAAGTGGACAG
GAGGGGGCTCAGGCTCGGGGCAAAGGAAATGGGACTGAGGTGAGGCAAAG
GAAATGGGACTGAGGTGAGCTGTGACGTTGAGCTAGCGTTCAGCAATGAC
TAGGGAAGTCCTAGTGTTTTGGGGGCGTGATGCGCCGCAGGCGAAGAAAA
CGGGCGTTGCGTTAAAATTGGCAGCCTGTGGAGACGTTCAGATATTCGTC
TTCTTCTTTTCTGTACAATAATGGCGGCGGTGTTGGTGGTTCACGTCCAA
ATTCGCAACTTGGAGAACAGTTTCAATCAGCTCTCTGTTGTACAGTGAGA
ACTTCGACCGGCCCCTTGCATTGACTCCCACCCCCCACTGCTATCGTGTT
GTAGTCACGAGGCGTACCTGATGACGCTGAAGCAGCAGCAAGACCGGAAC
ATCACGATGCTCAAGACGGAATTCGAGAGGAAGGCCGGGGAAGTGCACAA
GATATTTGAGAAGGCCATGAAAACGGTTAGTCACCCAAGCACGTTTCTTC
ACTCCTCAGGAGCACAGGGAGACTATCGCCGTACAGTGTTGCTAATAGTG
TTCCTCTGGACAAGAACACGTTCATATTTCGCTTGTCTTATTCTTGGAGC
GGGAATGCGAGGTTGCTTAACCCAGGATCACAAGAGGGGGGTGGCCACAT
AGTGGTGCTTTTGGACAAGCGCACATTGTCTTACGCTTGGGGCGGAAATA
CGGCGAGAGTAAGCTAAACTGCGATCCCATCGACCCTCGAATCCTGAACT
GGAACACCGGTAAAACAGGTCCGGGAACGGCTTGACGCAGCGAGAAAAGC
GGAGACGGCGAAGATCGAGGAGCGAAAAAACTCCCACATCGAGCGGCTCA
TGAAGGCGCATGAGAAGGCCTTCGCTGAGATCAAGAACTACTACAACGAC
ATCACGCACAACAACCTCGACCTCATCCGTTCCCTCAAGGAGGAGGTGCG
GTATTCATGTGGTATCGTTGTATGATTCATTATCACCTTACGGTCGGAGA
GCATACTGCCGCCTTTTGTGCTCGGATTCTCTTTCATTCAGGGTGTTGGT
CGTCTCCGGGTTTCTGGGCGTGAGTCTTGACGCCTGTCGGCGTATATTTC
TGGACGCCTCAGTAGGGCGGGGAACCAAATATCGTTGTTCCAATTTGTCT
CGACACGACACAAGGGAAGCTCCTCGAGCCTGAAAATTTCCTCGTCTTCA
ATCATCCTACGGCCGACCTGAAAAGGGAATGTTAAGCCCCCCGCCGTACC
ATGCTGTATCTAGAAGCAAGAGACCTTGATGATGAGCCTTCTTCTTATGC
ACTGTGTGTTGTTGTTCCTTGGAAGACCTTCACCCTGTATCGCTGCTGCT
GGTCGGCTACAAGTTGCTCGCTCAGGCTCCTCTAGCATCCGCCGACGAAT
AAAATCACTCCTCGCTGGAACTTTATCTTCTTGTCTCTCGTCTCTGTGCA
GGTCGCCGACATGAGAAAGCGGGAACAGCAGGACGAGAAGCTCATGTACG
AGATCGCCCAGGAAAACAAGAAGATGTCGGAGCCGCTCAGGAAGGCCCGA
CAGGTAAACCTGAATGCCCCAGTCAAGAAAAGCTGTGGTGAAAATGCCTT
ATATTTCCAGTGCATACAAGGGGCGCCTCCGGAGTAGGCTCATAAGATCA
TAGTAGTAGTGCCATCAAGGCGTGATGAAAGATGCAAGTGTACAGGATGT
GTTGGTGTGAATCAGCTACCACCTGCCATCCCCATTCATTCTCCAGCTCG
AACAGCTCACACAGCTCACTTATTTTTGACTCGAAGAGCCCAGCGAACGT
CAAAGAAATCTGAACAGTCTTATCTAGGACCGGACGATGTCGTGCCCAGG
GTGAAAACCGGTTTGAATGCACTCTCTGCACCACCAGCACAAAGCAATAT
GTCTCCGATGTGCCACACAGAGAGCCTGTTTCCCAGGTGACTCAGTTTGC
AGACACTAGCGTGACAACCTTTGACATGTCGAGCACGCAAGACCAACGCC
AGGGACATGTCTACGCCAGACCGTCAACCGGAAAGCAGCGAGAGAGTGAA
TGCAGCACAACACGATTGTAAACCTCCTTATCTCGTTCTCAAGGCAACCA
CACACTGTTGCTTGGGCTGATCAGGACGTGGAGAGGCTTCGGCAAGAGCT
AGAACGGTATCGACAGGAGCAGGAACAGCTGAGACAGACTAAGGCCAGGG
TGCTCGTTATGGAGGAGCGACTCCGGGACCTTCACTGGGAAGACGAGGTA
TGTACTGTAGCACTGTCCATAGCACACGGCAGCCGTTCTGATCGAATAGC
ATTGTGTCTCGCAACTTCACGTCTGGGTCCGCATTCGGTCAACAGAGTGA
TCTGGAAGAACGCTGTCGAGTCACTCCCCTGGAGATGAAGCACTGGACAC
TTCTCTCTTGATTTTCAGAGAGCCGTCCCGACTGTCCGTGCGAGAACGGC
ATTGGAACCTTGCGAACGGTACTCGTTTTCGGCAATATCGAGTTCGCTTA
GAGGACTATATACGACAGCAAAGTTGTGAAGCTTCCTTCATCCAGCAGAC
AGAAGACGAGGCACGAGGGGTGCGATAAGCGACAGATATTTTCTCGTCAA
GTCTGCCGCAGCAACAAAGTAGACGATATCAAGTATCGCAGCGAAATAGG
TGGTACACTGGGTAATGACGCTTCTACATGTACAATAATGTAACCACTCC
TCCCACGGGCACCCACACCCAACGTGCACATATCATGGGAACACATGCCC
ATCGGTAAATCCAATCACCTTTTGGTTTTTTCTTGGGCTCGCTTCGTGGA
GTGAATGTGGCGGCGTAAGCCACGGAACCCTCGTATCAGTACCACTCTTA
CAATACACAGCAGTTGGCGACGGCGATTGAGAAACAACCCTCAAACAAAA
ACAAGGCTCAGATAATGGTGAATATCAAGAAAAATCGGCTATGATACACA
CCTCAGTCGTGGATCCTCCTCTACACTCTCTATTCAATGACCTACTGCTG
TGAATGACATGCCCGACGGTAGTAACGAAATGAGAAATTGAGCCTCGGCA
AAAAATCGACGCTTCTTCAGATCGCTGGCGCTAACACGCACCCTCAAAGG
CTGACCGTTTTGCCGATGTCTCCTTGTGCCTGCCCTGCCACACAGGTGCT
GGGCCAGCGGTTCGCGATAGTCAGTCGAGAGCGGGACCAGCTGAGGGACC
GTTTCCAGGACTCTGTCAAGCAGGCTCAGCAAAAGTCGGGCTTCCGGAAT
CTCATCCTCGAGAGGAAGCTCGGGGGGCTTGCAGAGGAGGCTGAGAAAAG
AGACGCGTGCGTTAACGAGGTCGGTGGGGAGTGA
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Coding sequence (CDS) from alignment at Scaffold_636:614961..619544-

>EsuBft1087_2a-0001 ID=EsuBft1087_2a-0001|Name=EsuBft1087_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1035bp|location=Sequence derived from alignment at Scaffold_636:614961..619544- (Ectocarpus subulatus male Bft15b)
ATGTGTGTATCATTATCGTTCGCCGCACGAAAGTTGAACTATTTCTGGAT
AGTTGAGAAGAAAAACTTGGAAGACAAGCGGGCAGAGCTACGCAACAAGG
AGAGGGAGCTGCAGGACATCGAGGAGAAGCATCAGGTAGAAATCAAAATC
TACAAGCAGCGCGTAAAGCATCTCCTGTACGAGCAGCAGGATGACGTCAC
CGCCAAGAAGATGTCGGCGGAGGTGTCTCTGAAGCTTGCCCAGGACGCAC
ACCGAGAAGAAGAGAGGGAATTGAAAGTGGACAGGAGGGGGCTCAGGCTC
GGGGCAAAGGAAATGGGACTGAGTCACGAGGCGTACCTGATGACGCTGAA
GCAGCAGCAAGACCGGAACATCACGATGCTCAAGACGGAATTCGAGAGGA
AGGCCGGGGAAGTGCACAAGATATTTGAGAAGGCCATGAAAACGGTCCGG
GAACGGCTTGACGCAGCGAGAAAAGCGGAGACGGCGAAGATCGAGGAGCG
AAAAAACTCCCACATCGAGCGGCTCATGAAGGCGCATGAGAAGGCCTTCG
CTGAGATCAAGAACTACTACAACGACATCACGCACAACAACCTCGACCTC
ATCCGTTCCCTCAAGGAGGAGGTCGCCGACATGAGAAAGCGGGAACAGCA
GGACGAGAAGCTCATGTACGAGATCGCCCAGGAAAACAAGAAGATGTCGG
AGCCGCTCAGGAAGGCCCGACAGGACGTGGAGAGGCTTCGGCAAGAGCTA
GAACGGTATCGACAGGAGCAGGAACAGCTGAGACAGACTAAGGCCAGGGT
GCTCGTTATGGAGGAGCGACTCCGGGACCTTCACTGGGAAGACGAGGTGC
TGGGCCAGCGGTTCGCGATAGTCAGTCGAGAGCGGGACCAGCTGAGGGAC
CGTTTCCAGGACTCTGTCAAGCAGGCTCAGCAAAAGTCGGGCTTCCGGAA
TCTCATCCTCGAGAGGAAGCTCGGGGGGCTTGCAGAGGAGGCTGAGAAAA
GAGACGCGTGCGTTAACGAGGTCGGTGGGGAGTGA
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