EsuBft1087_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1087_11a-0001
Unique NameEsuBft1087_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_636contigScaffold_636:719174..720073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog400682.PAC_15703055
ProteomeIdEsuBft1087_11
Protein domainsIPR001584
Protein domainsPTHR11439
Protein domainsIPR012337
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon2
Max annot lvl33208|Metazoa
Length737
Hectar predicted targeting categoryother localisation
Evalue4.02e-24
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3ACW4@33154|Opisthokonta,3BVPH@33208|Metazoa
Date last modified2016-06-13
Date creation2016-06-13
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0003824
GO0015074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1087_11aEsuBft1087_11aEctocarpus subulatus male Bft15bgeneScaffold_636 719174..720073 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1087_11a-0001-exonEsuBft1087_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_636 719174..719716 -
EsuBft1087_11a-0001-exonagat-exon-67865Ectocarpus subulatus male Bft15bexonScaffold_636 719880..720073 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1087_11a-0001-exonagat-three_prime_utr-802Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_636 719174..719214 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1087_11a-0001-cdsEsuBft1087_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_636 719215..719716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1087_11a-0001EsuBft1087_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_636 719215..720073 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1087_11a-0001 ID=EsuBft1087_11a-0001|Name=EsuBft1087_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=737bp|location=Sequence derived from alignment at Scaffold_636:719174..720073- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGTGGGCGAGCTCTGGGAGTGCCTGGGGTGCTCGACGGCGAAGGG
GCTTTCCAAGCCCATCCCCAACAAAACGTCGACCCGAGCAGTTAAGAAAC
TGCAGCGAGTTTTCGTGGATTTGAGTGGAAAAGCTAGGGTGCAGAGCTTG
GGGGGAAAGTGGTACACTCTCATTGTCAAGGATGATTACACAAGGTGGAA
CCGTGTCTATTTCCTGAAGCACAAATCAGACGCAGCTGAGGCATTCGAGA
GATACCTTGCCGAAAACCGGGCAAACGGTGCCCCGTCCGATGTCATGGTC
GTGAGATCTGACAACGGAGGAGAGTTCTTTGAGGGAGAGTTCGGCAGGGT
GTGCCGGAAGTACTGCATCAAACAGGAGTTCACCCCCGCACACAGCCCAG
AATACGATGGAGTAGCTGAGAGAGCATTGGGTCTGATCGAGGATGCAGCA
CTAGCCGCCCGTATCCAAGCGCCAACTCTTTACCCCGGAGCACCGAACTA
CCCATCCCTTTGGGCCGAGGCCATAGCTTGGTCATGCAACGCCCTGAACT
GCACCTCCACCACATCCAACCCAGAGAAGAAGTCGCCGTACGAGATGTGG
CACGGGCACCCTCCCCCGCCGGGGGCGACGTACCCGTTCCTCATACCTGC
CGTATACAAGGTCAAGCGCACGCACAAGTCCGAGCCGAAAGAATAAAAGT
GTTTTAACCTCGGCCCGGTAATCAACACCAACCGTGA
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protein sequence of EsuBft1087_11a-0001

>EsuBft1087_11 ID=EsuBft1087_11|Name=EsuBft1087_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=231bp
MLVGELWECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSL
GGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV
VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYDGVAERALGLIEDAA
LAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW
HGHPPPPGATYPFLIPAVYKVKRTHKSEPKE
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mRNA from alignment at Scaffold_636:719174..720073-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1087_11a-0001 ID=EsuBft1087_11a-0001|Name=EsuBft1087_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=900bp|location=Sequence derived from alignment at Scaffold_636:719174..720073- (Ectocarpus subulatus male Bft15b)
ATGCTGGTGGGCGAGCTCTGGGAGTGCCTGGGGTGCTCGACGGCGAAGGG
GCTTTCCAAGCCCATCCCCAACAAAACGTCGACCCGAGCAGTTAAGAAAC
TGCAGCGAGTTTTCGTGGATTTGAGTGGAAAAGCTAGGGTGCAGAGCTTG
GGGGGAAAGTGGTACACTCTCATTGTCAAGGATGATTACACAAGGTGGAA
CCGTGTTTGTTTCCTGAAGCACAAATCAGACGCAGCTGAGGCATTCGAGA
GGTACCTTGCCGAAAACCGGGCAAACGGTGCCCCGTCNTGGAAAAGCTAG
GGTGCAGAGCTTGGGGGGAAAGTGGTACACTCTCATTGTCAAGGATGATT
ACACAAGGTGGAACCGTGTCTATTTCCTGAAGCACAAATCAGACGCAGCT
GAGGCATTCGAGAGATACCTTGCCGAAAACCGGGCAAACGGTGCCCCGTC
CGATGTCATGGTCGTGAGATCTGACAACGGAGGAGAGTTCTTTGAGGGAG
AGTTCGGCAGGGTGTGCCGGAAGTACTGCATCAAACAGGAGTTCACCCCC
GCACACAGCCCAGAATACGATGGAGTAGCTGAGAGAGCATTGGGTCTGAT
CGAGGATGCAGCACTAGCCGCCCGTATCCAAGCGCCAACTCTTTACCCCG
GAGCACCGAACTACCCATCCCTTTGGGCCGAGGCCATAGCTTGGTCATGC
AACGCCCTGAACTGCACCTCCACCACATCCAACCCAGAGAAGAAGTCGCC
GTACGAGATGTGGCACGGGCACCCTCCCCCGCCGGGGGCGACGTACCCGT
TCCTCATACCTGCCGTATACAAGGTCAAGCGCACGCACAAGTCCGAGCCG
AAAGAATAAAAGTGTTTTAACCTCGGCCCGGTAATCAACACCAACCGTGA
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Coding sequence (CDS) from alignment at Scaffold_636:719174..720073-

>EsuBft1087_11a-0001 ID=EsuBft1087_11a-0001|Name=EsuBft1087_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=696bp|location=Sequence derived from alignment at Scaffold_636:719174..720073- (Ectocarpus subulatus male Bft15b)
ATGCTGGTGGGCGAGCTCTGGGAGTGCCTGGGGTGCTCGACGGCGAAGGG
GCTTTCCAAGCCCATCCCCAACAAAACGTCGACCCGAGCAGTTAAGAAAC
TGCAGCGAGTTTTCGTGGATTTGAGTGGAAAAGCTAGGGTGCAGAGCTTG
GGGGGAAAGTGGTACACTCTCATTGTCAAGGATGATTACACAAGGTGGAA
CCGTGTCTATTTCCTGAAGCACAAATCAGACGCAGCTGAGGCATTCGAGA
GATACCTTGCCGAAAACCGGGCAAACGGTGCCCCGTCCGATGTCATGGTC
GTGAGATCTGACAACGGAGGAGAGTTCTTTGAGGGAGAGTTCGGCAGGGT
GTGCCGGAAGTACTGCATCAAACAGGAGTTCACCCCCGCACACAGCCCAG
AATACGATGGAGTAGCTGAGAGAGCATTGGGTCTGATCGAGGATGCAGCA
CTAGCCGCCCGTATCCAAGCGCCAACTCTTTACCCCGGAGCACCGAACTA
CCCATCCCTTTGGGCCGAGGCCATAGCTTGGTCATGCAACGCCCTGAACT
GCACCTCCACCACATCCAACCCAGAGAAGAAGTCGCCGTACGAGATGTGG
CACGGGCACCCTCCCCCGCCGGGGGCGACGTACCCGTTCCTCATACCTGC
CGTATACAAGGTCAAGCGCACGCACAAGTCCGAGCCGAAAGAATAA
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