EsuBft1087_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1087_10a-0001
Unique Name	EsuBft1087_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_636	contig	Scaffold_636:717699..719036 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7425.NV18849-PA
ProteomeId	EsuBft1087_10
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	129
Evalue	0.000117
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3BGB6@33208\|Metazoa,3D5G4@33213\|Bilateria,41ZUZ@6656\|Arthropoda,3SKEY@50557\|Insecta
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1087_10a	EsuBft1087_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_636 717699..719036 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1087_10a-0001-exon	EsuBft1087_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_636 717699..718241 -
EsuBft1087_10a-0001-exon	agat-exon-67864	Ectocarpus subulatus male Bft15b	exon	Scaffold_636 718287..719036 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1087_10a-0001-cds	EsuBft1087_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_636 717699..718241 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1087_10a-0001	EsuBft1087_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_636 717699..719036 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_636:717699..719036-
coding sequence from alignment at Scaffold_636:717699..719036-

spliced messenger RNA

>EsuBft1087_10a-0001 ID=EsuBft1087_10a-0001|Name=EsuBft1087_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1293bp|location=Sequence derived from alignment at Scaffold_636:717699..719036- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCGTCGAGCCAAGGTGGAGGGAGGGCGGATGGAGAACCTGTGGA
TGGAGGACCAGGTTTCAACCTTGGCACGATGGCAGTCCCGGGGCCCGCGG
GCCCGCCCGCGCGCGTATCGCCGGCGGCGGCGCCGGCCGCGCCCCAGGAG
TCGGGCGCGGGCGACGCTGGCGATGGCGCCCCCTCGAGCAGGGAGAGCGC
GAGCGTCGCCCCATCTACCACGTCGACCGGCACGGCCGATGTGGGCGGCG
GCGAGGACGACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCTCGAGCAGCCAGGGCGCGA
GCGTCGCCCCATCTACCACGTCGACCGGCACGGCCGATGTGGGCGGCGGC
GAGGACGACCACCGCAGCAGCAGCAGCCGCCGTAGCGGCGGCAGCGGCGG
CAACAACAGCAGCGGCGGCAGCAGCGGCGATGACGTCGGCAGCGACAGCA
GCAGCTGCAGCGACAGCGAGACGGCTCTCCCGGCGCTCCGTGGGCCAGAG
GCCCGGCGGCTCGCCCGCTTCGACNACCCTCGCCGAAACCCGAGGTACGA
GTCGCCCCCGTCGCCGACGAGTGTCGAAGCCCTGCTCGCCTCGGTGGCGA
GCCTGCCCGTCAGCAGCACGGAGGAATTCACTCGCTGGATGCTCTCGGGG
TTGCTGTTCGAGCGCGCGGAGGAGGACCACGCTGCGCGCCAAGAGGCGGA
GGACTTCCTGCTGGGTGCGGTGGACCTCATGCTCAACTCGCCAGACGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCCGCATCCCCGCTACCCC
TGGTGCCGAAATAGGCCCGAAGGGAGATGACGGGAAGGAAGGGGAGTGGC
CGGTGAGGGAGGCCATCGGCAGCATGATGTGGGTGTCAACTTTCTCGCGT
CTAGATGGCTCGTTCGCCGTGCGTGCGGTAGCGCGCCACGCCAACGCCCC
GGCGAAGAGGCACTGGGATGCCATCCAGACGATCCTCGGCTAG

protein sequence of EsuBft1087_10a-0001

>EsuBft1087_10 ID=EsuBft1087_10|Name=EsuBft1087_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=430bp
MGASSQGGGRADGEPVDGGPGFNLGTMAVPGPAGPPARVSPAAAPAAPQE
SGAGDAGDGAPSSRESASVAPSTTSTGTADVGGGEDDRXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXPSSSQGASVAPSTTSTGTADVGGG
EDDHRSSSSRRSGGSGGNNSSGGSSGDDVGSDSSSCSDSETALPALRGPE
ARRLARFDXPRRNPRYESPPSPTSVEALLASVASLPVSSTEEFTRWMLSG
LLFERAEEDHAARQEAEDFLLGAVDLMLNSPDXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXSRIPATPGAEIGPKGDDGKEGEWPVREAIGSMMWVSTFSR
LDGSFAVRAVARHANAPAKRHWDAIQTILG

mRNA from alignment at Scaffold_636:717699..719036-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1087_10a-0001 ID=EsuBft1087_10a-0001|Name=EsuBft1087_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1338bp|location=Sequence derived from alignment at Scaffold_636:717699..719036- (Ectocarpus subulatus male Bft15b)
ATGGGCGCGTCGAGCCAAGGTGGAGGGAGGGCGGATGGAGAACCTGTGGA
TGGAGGACCAGGTTTCAACCTTGGCACGATGGCAGTCCCGGGGCCCGCGG
GCCCGCCCGCGCGCGTATCGCCGGCGGCGGCGCCGGCCGCGCCCCAGGAG
TCGGGCGCGGGCGACGCTGGCGATGGCGCCCCCTCGAGCAGGGAGAGCGC
GAGCGTCGCCCCATCTACCACGTCGACCGGCACGGCCGATGTGGGCGGCG
GCGAGGACGACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCTCGAGCAGCCAGGGCGCGA
GCGTCGCCCCATCTACCACGTCGACCGGCACGGCCGATGTGGGCGGCGGC
GAGGACGACCACCGCAGCAGCAGCAGCCGCCGTAGCGGCGGCAGCGGCGG
CAACAACAGCAGCGGCGGCAGCAGCGGCGATGACGTCGGCAGCGACAGCA
GCAGCTGCAGCGACAGCGAGACGGCTCTCCCGGCGCTCCGTGGGCCAGAG
GCCCGGCGGCTCGCCCGCTTCGACNACCCTCGCCGAAACCCGAGGTACGA
GTCGCCCCCGTCGCCGACGAGTGTCGAAGCCCTGCTCGCCTCGGTGGCGA
GCCTGCCCGTCAGCAGCACGGAGGAATTCACTCGCTGGATGCTCTCGGGG
GTACTTCACGTGGCGGAGGGGCAAGAAGCGAGGGCGGTGCGATAGTTGCT
GTTCGAGCGCGCGGAGGAGGACCACGCTGCGCGCCAAGAGGCGGAGGACT
TCCTGCTGGGTGCGGTGGACCTCATGCTCAACTCGCCAGACGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCTTCCCGCATCCCCGCTACCCCTGGTG
CCGAAATAGGCCCGAAGGGAGATGACGGGAAGGAAGGGGAGTGGCCGGTG
AGGGAGGCCATCGGCAGCATGATGTGGGTGTCAACTTTCTCGCGTCTAGA
TGGCTCGTTCGCCGTGCGTGCGGTAGCGCGCCACGCCAACGCCCCGGCGA
AGAGGCACTGGGATGCCATCCAGACGATCCTCGGCTAG

Coding sequence (CDS) from alignment at Scaffold_636:717699..719036-

>EsuBft1087_10a-0001 ID=EsuBft1087_10a-0001|Name=EsuBft1087_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1293bp|location=Sequence derived from alignment at Scaffold_636:717699..719036- (Ectocarpus subulatus male Bft15b)
ATGGGCGCGTCGAGCCAAGGTGGAGGGAGGGCGGATGGAGAACCTGTGGA
TGGAGGACCAGGTTTCAACCTTGGCACGATGGCAGTCCCGGGGCCCGCGG
GCCCGCCCGCGCGCGTATCGCCGGCGGCGGCGCCGGCCGCGCCCCAGGAG
TCGGGCGCGGGCGACGCTGGCGATGGCGCCCCCTCGAGCAGGGAGAGCGC
GAGCGTCGCCCCATCTACCACGTCGACCGGCACGGCCGATGTGGGCGGCG
GCGAGGACGACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCTCGAGCAGCCAGGGCGCGA
GCGTCGCCCCATCTACCACGTCGACCGGCACGGCCGATGTGGGCGGCGGC
GAGGACGACCACCGCAGCAGCAGCAGCCGCCGTAGCGGCGGCAGCGGCGG
CAACAACAGCAGCGGCGGCAGCAGCGGCGATGACGTCGGCAGCGACAGCA
GCAGCTGCAGCGACAGCGAGACGGCTCTCCCGGCGCTCCGTGGGCCAGAG
GCCCGGCGGCTCGCCCGCTTCGACNACCCTCGCCGAAACCCGAGGTACGA
GTCGCCCCCGTCGCCGACGAGTGTCGAAGCCCTGCTCGCCTCGGTGGCGA
GCCTGCCCGTCAGCAGCACGGAGGAATTCACTCGCTGGATGCTCTCGGGG
TTGCTGTTCGAGCGCGCGGAGGAGGACCACGCTGCGCGCCAAGAGGCGGA
GGACTTCCTGCTGGGTGCGGTGGACCTCATGCTCAACTCGCCAGACGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCCGCATCCCCGCTACCCC
TGGTGCCGAAATAGGCCCGAAGGGAGATGACGGGAAGGAAGGGGAGTGGC
CGGTGAGGGAGGCCATCGGCAGCATGATGTGGGTGTCAACTTTCTCGCGT
CTAGATGGCTCGTTCGCCGTGCGTGCGGTAGCGCGCCACGCCAACGCCCC
GGCGAAGAGGCACTGGGATGCCATCCAGACGATCCTCGGCTAG