EsuBft1086_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1086_7a-0001
Unique NameEsuBft1086_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_133contigScaffold_133:518358..521619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FX28
ProteomeIdEsuBft1086_7
Protein domainsPTHR14374
Ownerapollo_admin@sb-roscoff.fr
Notetrafficking protein particle complex subunit 11 os:danio rerio gn:trappc11 pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1253
Hectar predicted targeting categoryother localisation
Evalue1.21e-236
EggNOG OGsKOG4386@1|root,KOG4386@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K02575,ko:K20308
KEGG TC2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
Descriptionregulation of protein complex stability
COG categoryS
BRITEko00000,ko00001,ko00002,ko02000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_7aEsuBft1086_7aEctocarpus subulatus male Bft15bgeneScaffold_133 518358..521619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_7a-0001EsuBft1086_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_133 518411..521619 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_7a-0001-exonEsuBft1086_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_133 518358..518554 -
EsuBft1086_7a-0001-exonagat-exon-99853Ectocarpus subulatus male Bft15bexonScaffold_133 519038..519163 -
EsuBft1086_7a-0001-exonagat-exon-99856Ectocarpus subulatus male Bft15bexonScaffold_133 519595..519721 -
EsuBft1086_7a-0001-exonagat-exon-99854Ectocarpus subulatus male Bft15bexonScaffold_133 520213..520460 -
EsuBft1086_7a-0001-exonagat-exon-99855Ectocarpus subulatus male Bft15bexonScaffold_133 521065..521619 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_7a-0001-exonagat-three_prime_utr-799Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_133 518358..518410 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_7a-0001-cdsEsuBft1086_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_133 518411..518554 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1086_7a-0001 ID=EsuBft1086_7a-0001|Name=EsuBft1086_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1253bp|location=Sequence derived from alignment at Scaffold_133:518358..521619- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGTTGATCAGCGAGAGGCGCTAGAGGACCCCCGCCCTTTGGTGGG
GATCATGGCCCATGCCTACGCCAACCCCCTTATCAACAAGAGGGCTCCCG
GCGCAGGCAGCGGCACCGCCGCGGGGGACACCGACACCGATGCCGCCGGG
GGAGGAGGCGACGAGGAAGAACTAGACGCGTCGACAGCGGCGGCGGCGGC
GGCGGCCAACGAGCTTGTGATTGACGCCCTCCTGGCGGCGGAGGCGGAGA
CCATCGGCCCCGAGGTACGGTTCCTCGGCCTGCCTCGAGGCACTGCTGCC
GCTTTCCCGGCGAAGAAGCCGAGCGGCGGCGCCTGGCGCGGGGCCGACGG
GCTCAGGGTCGTGGACAGCGCCCTGCCGAAGGGGCTGGTGAAGCGGGGCT
GGTTGCACAAGCACACGCGAGAGCTCCCGGGCTCGCTAGTGTACCTTGCC
TCGGTGGACGTCTCGGCGGGAGCGGAGGATTGGGCGAACACCGAGGATGA
GATCGTCGGAGATCTGAGGAGCGTTGTGGCGAACATGGCGGCGCGGGATG
TCAAGGTATTGTTGGTGCTCGTACGGGCCGGCGCGGAGGCCGGGCAGGGC
GGGGGCAGGGAGGAGCGGGACGTGGCCGACGAGCGCGCTTTGAGCCTCCG
CAGGCGGGCGGAGATCGACGCCAGGATGGTGCTCATGATCGGCGAGCCCG
ACCTGGCTTCCCACAGCAATCCCCCCTCGGTGCGGCGCATCGCGAAGGCG
GCCAAGGACTTGGCCGTCGCCCACTACGCCTCGCACATCTCGCGCCTTCG
AAGATGGGAAAAGGTGCTGGTGCCTACGCAGCGACTGTACCGCCCGCTCC
TGACGAGGCTGTACTTTAAACTTGGAGTTCTTCACGAGATGCAGGGCCTC
GTGGATAGGAGCTTGCTGTGCTACCAAGAGGTGTCGGCTCTTCTGAGCGA
CATGGTGCCGCGGGACGAGGGACGGTTTCAGGGTGGAAGGGGCGACGCAG
ATGGAGGAACGCTAGGGGGGGCATTCCTTCGTGGGGGAGCGGACCCGATG
GAGCAGATCCGAGGCGTGGCGGAAGTGGTCCACCTCCGGCTGGTGCGGAA
CCATCTGCACCGTAGCATGAGCGTCGAGGGGGCCATCCGACAGCTCCGGC
GGCACGTGTCCGCGTTCGGCAGACCCGGTGATGCTGCCGCCGCCGCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNN
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protein sequence of EsuBft1086_7a-0001

>EsuBft1086_7 ID=EsuBft1086_7|Name=EsuBft1086_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=400bp
MQVDQREALEDPRPLVGIMAHAYANPLINKRAPGAGSGTAAGDTDTDAAG
GGGDEEELDASTAAAAAAANELVIDALLAAEAETIGPEVRFLGLPRGTAA
AFPAKKPSGGAWRGADGLRVVDSALPKGLVKRGWLHKHTRELPGSLVYLA
SVDVSAGAEDWANTEDEIVGDLRSVVANMAARDVKVLLVLVRAGAEAGQG
GGREERDVADERALSLRRRAEIDARMVLMIGEPDLASHSNPPSVRRIAKA
AKDLAVAHYASHISRLRRWEKVLVPTQRLYRPLLTRLYFKLGVLHEMQGL
VDRSLLCYQEVSALLSDMVPRDEGRFQGGRGDADGGTLGGAFLRGGADPM
EQIRGVAEVVHLRLVRNHLHRSMSVEGAIRQLRRHVSAFGRPGDAAAAAX
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mRNA from alignment at Scaffold_133:518358..521619-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1086_7a-0001 ID=EsuBft1086_7a-0001|Name=EsuBft1086_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3262bp|location=Sequence derived from alignment at Scaffold_133:518358..521619- (Ectocarpus subulatus male Bft15b)
ATGCAGGTTGATCAGCGAGAGGCGCTAGAGGACCCCCGCCCTTTGGTGGG
GATCATGGCCCATGCCTACGCCAACCCCCTTATCAACAAGAGGGCTCCCG
GCGCAGGCAGCGGCACCGCCGCGGGGGACACCGACACCGATGCCGCCGGG
GGAGGAGGCGACGAGGAAGAACTAGACGCGTCGACAGCGGCGGCGGCGGC
GGCGGCCAACGAGCTTGTGATTGACGCCCTCCTGGCGGCGGAGGCGGAGA
CCATCGGCCCCGAGGTACGGTTCCTCGGCCTGCCTCGAGGCACTGCTGCC
GCTTTCCCGGCGAAGAAGCCGAGCGGCGGCGCCTGGCGCGGGGCCGACGG
GCTCAGGGTCGTGGACAGCGCCCTGCCGAAGGGGCTGGTGAAGCGGGGCT
GGTTGCACAAGCACACGCGAGAGCTCCCGGGCTCGCTAGTGTACCTTGCC
TCGGTGGACGTCTCGGCGGGAGCGGAGGATTGGGCGAACACCGAGGATGA
GATCGTCGGAGATCTGAGGAGCGTTGTGGCGAACATGGCGGCGCGGGATG
TCAAGGTGCGGGGAGGTGCCAAATGTGGTTGTCCGTGCGGAAAGTCTGTG
TGCGTTGCTTTGTGTGGCGCAGCGCTACGGTTGATATTTTGTTCTCTAGC
GTTTGGCCACGCGATTGCTTTGGCCCCGCAGCTCTGCTGCTGTGCTATGG
TACTACAGTAGTTGATACTCCCCGTGTCTCCGCCTGCCCATGCGACACCT
GCTGGATGCTCCTGTTATCGACTACTCGTACTCACAAACAGCAGTGGATG
CAACCCAGCTGGCAGTATGGCGAGTAGATGACAATGGCACCCACCGCTGC
GAGTTGCAGCATCGGAGCTTTAGGCGTGAGAACAGAGATGCCGTCATCAA
CACGCATGTTCTCGACTACTGCTGGTACCGCCTAGTCGCTTGCGATGCAC
GCATGCCTGCCGTGCACTTTTTTGGTGACGATCACTTTGCCCGTGCAGCA
CGCTGTGTTCGCCATGTTTCCCCTCGCCCCCCTTTTAACGTACCCTATGG
TTGAACCTCTCACCCTCTGTCTCTACCTGTCTGTCTGTCTGTCTGTCTGT
CTGTCTGTCTGTCTCTGTCTGTCTCTCTCTCTGTCTCTCTCTCTTTCTCT
CCCGAGCAGGTATTGTTGGTGCTCGTACGGGCCGGCGCGGAGGCCGGGCA
GGGCGGGGGCAGGGAGGAGCGGGACGTGGCCGACGAGCGCGCTTTGAGCC
TCCGCAGGCGGGCGGAGATCGACGCCAGGATGGTGCTCATGATCGGCGAG
CCCGACCTGGCTTCCCACAGCAATCCCCCCTCGGTGCGGCGCATCGCGAA
GGCGGCCAAGGACTTGGCCGTCGCCCACTACGCCTCGCACATCTCGCGCC
TTCGAAGGTGATGACGTCTCCACACAGCAGTGCTACCGAACCCCGTGTAC
ACAAGTATACAAGGTTACTCAGTTTGTCCAGAGTGGCAATGCGTACGGGA
AGTTGACGACGATGTCGAGGGAACATCTCATTCAGCCCTCCGTGCTGCAT
TGTGCAAGCGGTTGGTCTACCGCGATTTTGACCTGTTGAGCGTACGGCGC
TTGCAGCAGCAGCGGTAGCAGGAGTCCTTCCCCTTCGTGGGCACACCCGG
TCTTTGGTGGGAGAAGATTTTCTAGTCTCAGCAGTTCTGGTGTAGGGGTT
GGAATGGTCGGACAAGCCCACTTCCGTAGAACAGCGCACCCTTGCCTCAG
CCCACGCTTGCCTCATCTTAGTACCTCTTCGGGGAGCAGTGCAAAAGGGT
ATCCCTAAACAACACCGCCCCGCCCACGCAAGCTTATCCCTACCCTAATC
CAGCAGCCCCTCTCGTGCCTCTCTCCGACATGCTGTGTAACCCCCAAGAT
GGGAAAAGGTGCTGGTGCCTACGCAGCGACTGTACCGCCCGCTCCTGACG
AGGCTGTACTTTAAACTTGGAGTTCTTCACGAGATGCAGGGCCTCGTGGA
TAGGAGCTTGCTGTGCTACCAAGAGGTACTTACGATGCGTCTTGCGTGGC
ATGCTCTTGTACTTGTACGCGCGTGCGATTGCTTTTGTGTTTTCCCTTTT
GGCGCGGTGGGAGAAATGAGGGGGGATTGGTTAACGGCGGTGTCCGTATT
CTGATGGGTCCATTAGAAGCTGAGACTAAAGCATCCTGAGCGGCACCGGG
TGCAGTACAACGGCAATTGAGCTGATTCATTCCCCACATCGCCCCCCAAT
ACACGCTCAGCCTGTGCACCCTGCTCTGTCTCTCATGTTATTGGCGCTTT
TGGTTGGGCAAGCGGTACCGTCCACAGATTTCGTGTATGTACGTTTGCCA
ACATCGGTGCTGGTTGGTAACAACTGCTTGACCGCTGTGCCACCCCTCCC
TATTCATGTACGTTGCACCCGCGGCACGTTGTTATCTCTCGCAAACTGAT
CGAAAGGTGTCGGCTCTTCTGAGCGACATGGTGCCGCGGGACGAGGGACG
GTTTCAGGGTGGAAGGGGCGACGCAGATGGAGGAACGCTAGGGGGGGCAT
TCCTTCGTGGGGGAGCGGACCCGATGGAGCAGGTGAGACTGACGAGAGGA
AATATTCGATGTTGCAAGATTGATCTATTATTGATGTTCTGTGTTTGAGT
TGTCGCTGTGAAGCTGTAGTACCTGTTGTGCGGTAGGCACGTGTTGCTGA
TATTGGCGTCCCGAATCACAGCGTTTATTTCTTGACACGTCTTTTGCGCA
GTCTCTCGAATTTTTCTTCTTCTTGCCTCACCTTTGCGGGCGTGCTTTCG
AGTGTTCGTGTTTTCCTCCCCTCCGTTCGACCACCTTGACACCAAGAGAC
GAAGCGGGCCAGAAATCCCTGTTTGAGATGTGTCCTCCCTTTGCCGAAGC
TGTCCTTGGCACATGATACTTAGTTTCAGTGACACGATGTCGAGTTTCCT
CTGTGGCATTATCTTTGTTCTCCTCTATGACATTATCTTTGTTCTTGTTA
ATTCGTTTTTCTCAACCAAACAACGACGATCACGACGGCCCAACAACAAC
AACAATCACCACCAGATCCGAGGCGTGGCGGAAGTGGTCCACCTCCGGCT
GGTGCGGAACCATCTGCACCGTAGCATGAGCGTCGAGGGGGCCATCCGAC
AGCTCCGGCGGCACGTGTCCGCGTTCGGCAGACCCGGTGATGCTGCCGCC
GCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_133:518358..521619-

>EsuBft1086_7a-0001 ID=EsuBft1086_7a-0001|Name=EsuBft1086_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1200bp|location=Sequence derived from alignment at Scaffold_133:518358..521619- (Ectocarpus subulatus male Bft15b)
ATGCAGGTTGATCAGCGAGAGGCGCTAGAGGACCCCCGCCCTTTGGTGGG
GATCATGGCCCATGCCTACGCCAACCCCCTTATCAACAAGAGGGCTCCCG
GCGCAGGCAGCGGCACCGCCGCGGGGGACACCGACACCGATGCCGCCGGG
GGAGGAGGCGACGAGGAAGAACTAGACGCGTCGACAGCGGCGGCGGCGGC
GGCGGCCAACGAGCTTGTGATTGACGCCCTCCTGGCGGCGGAGGCGGAGA
CCATCGGCCCCGAGGTACGGTTCCTCGGCCTGCCTCGAGGCACTGCTGCC
GCTTTCCCGGCGAAGAAGCCGAGCGGCGGCGCCTGGCGCGGGGCCGACGG
GCTCAGGGTCGTGGACAGCGCCCTGCCGAAGGGGCTGGTGAAGCGGGGCT
GGTTGCACAAGCACACGCGAGAGCTCCCGGGCTCGCTAGTGTACCTTGCC
TCGGTGGACGTCTCGGCGGGAGCGGAGGATTGGGCGAACACCGAGGATGA
GATCGTCGGAGATCTGAGGAGCGTTGTGGCGAACATGGCGGCGCGGGATG
TCAAGGTATTGTTGGTGCTCGTACGGGCCGGCGCGGAGGCCGGGCAGGGC
GGGGGCAGGGAGGAGCGGGACGTGGCCGACGAGCGCGCTTTGAGCCTCCG
CAGGCGGGCGGAGATCGACGCCAGGATGGTGCTCATGATCGGCGAGCCCG
ACCTGGCTTCCCACAGCAATCCCCCCTCGGTGCGGCGCATCGCGAAGGCG
GCCAAGGACTTGGCCGTCGCCCACTACGCCTCGCACATCTCGCGCCTTCG
AAGATGGGAAAAGGTGCTGGTGCCTACGCAGCGACTGTACCGCCCGCTCC
TGACGAGGCTGTACTTTAAACTTGGAGTTCTTCACGAGATGCAGGGCCTC
GTGGATAGGAGCTTGCTGTGCTACCAAGAGGTGTCGGCTCTTCTGAGCGA
CATGGTGCCGCGGGACGAGGGACGGTTTCAGGGTGGAAGGGGCGACGCAG
ATGGAGGAACGCTAGGGGGGGCATTCCTTCGTGGGGGAGCGGACCCGATG
GAGCAGATCCGAGGCGTGGCGGAAGTGGTCCACCTCCGGCTGGTGCGGAA
CCATCTGCACCGTAGCATGAGCGTCGAGGGGGCCATCCGACAGCTCCGGC
GGCACGTGTCCGCGTTCGGCAGACCCGGTGATGCTGCCGCCGCCGCNNNN
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