EsuBft1086_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1086_3a-0001
Unique NameEsuBft1086_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_133contigScaffold_133:493164..493720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1086_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length21
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_3aEsuBft1086_3aEctocarpus subulatus male Bft15bgeneScaffold_133 493164..493720 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_3a-0001-exonEsuBft1086_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_133 493164..493311 +
EsuBft1086_3a-0001-exonagat-exon-99830Ectocarpus subulatus male Bft15bexonScaffold_133 493659..493720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_3a-0001-cdsEsuBft1086_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_133 493164..493311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_3a-0001EsuBft1086_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_133 493164..493720 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1086_3a-0001 ID=EsuBft1086_3a-0001|Name=EsuBft1086_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=210bp|location=Sequence derived from alignment at Scaffold_133:493164..493720+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGACACGTGGCAATGGGATACTCGGTGCACATGCAGCGCCTTCT
CGGCCACCTGACCTGGTGGATCTTCCCCTTGTTGATGCCCGGGTACACTG
ACCTCACGAAGGACGGGAAGGAATTGCGTGCTAACGTGTTCATATCGTGC
TTTCTAGGCCACTGTCCGGCGGAATACTGCCGCGTCGAGCATCCTGCTGA
CGATCAATGA
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protein sequence of EsuBft1086_3a-0001

>EsuBft1086_3 ID=EsuBft1086_3|Name=EsuBft1086_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=69bp
MLRHVAMGYSVHMQRLLGHLTWWIFPLLMPGYTDLTKDGKELRANVFISC
FLGHCPAEYCRVEHPADDQ
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mRNA from alignment at Scaffold_133:493164..493720+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1086_3a-0001 ID=EsuBft1086_3a-0001|Name=EsuBft1086_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=557bp|location=Sequence derived from alignment at Scaffold_133:493164..493720+ (Ectocarpus subulatus male Bft15b)
ATGCTGCGACACGTGGCAATGGGATACTCGGTGCACATGCAGCGCCTTCT
CGGCCACCTGACCTGGTGGATCTTCCCCTTGTTGATGCCCGGGTACACTG
ACCTCACGAAGGACGGGAAGGAATTGCGTGCTAACGTGTTCATATCGTGT
GAGTGCTTGGAATGTGACTGGTTTGTAAATCTGAATGTGGTTGATTGGAG
GAGGGGCGGGGGGGGACTCAGTTCTGTGTGGCGTGTTGCCCGTGGGCGGA
TGTTCCTCGACGTAGCACGCGTGTAGGTGTGTTGGGTTGTCGGGGCACTG
TGTCCGGTGAGTTTCGATGTTGAATCATACCATGTTCAACGCATGTGGAC
TCTTGAGAGCTTTGGCCGCAGTCACTAAGCGAGGAGTAGGAACCATCTTG
CGCTATGTCGACAGCAGTGCGAGCGAAATGGATATTTCGAATGAAACCAA
AAAGCGCCAGGGTAGGAGTAAGTAGATATGTATGGACCCCTACAGGCTTT
CTAGGCCACTGTCCGGCGGAATACTGCCGCGTCGAGCATCCTGCTGACGA
TCAATGA
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Coding sequence (CDS) from alignment at Scaffold_133:493164..493720+

>EsuBft1086_3a-0001 ID=EsuBft1086_3a-0001|Name=EsuBft1086_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=210bp|location=Sequence derived from alignment at Scaffold_133:493164..493720+ (Ectocarpus subulatus male Bft15b)
ATGCTGCGACACGTGGCAATGGGATACTCGGTGCACATGCAGCGCCTTCT
CGGCCACCTGACCTGGTGGATCTTCCCCTTGTTGATGCCCGGGTACACTG
ACCTCACGAAGGACGGGAAGGAATTGCGTGCTAACGTGTTCATATCGTGC
TTTCTAGGCCACTGTCCGGCGGAATACTGCCGCGTCGAGCATCCTGCTGA
CGATCAATGA
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