EsuBft1086_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1086_2a-0001
Unique NameEsuBft1086_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_133contigScaffold_133:492002..492672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog159749.K0TI34
ProteomeIdEsuBft1086_2
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length32
Hectar predicted targeting categorysignal anchor
Evalue1.48e-07
EggNOG OGs2DZZC@1|root,2S7FI@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_2aEsuBft1086_2aEctocarpus subulatus male Bft15bgeneScaffold_133 492002..492672 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_2a-0001-exonEsuBft1086_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_133 492002..492217 +
EsuBft1086_2a-0001-exonagat-exon-99829Ectocarpus subulatus male Bft15bexonScaffold_133 492565..492672 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_2a-0001-cdsEsuBft1086_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_133 492002..492217 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_2a-0001EsuBft1086_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_133 492002..492672 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1086_2a-0001 ID=EsuBft1086_2a-0001|Name=EsuBft1086_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=324bp|location=Sequence derived from alignment at Scaffold_133:492002..492672+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACATCCTCCCCGCTGGACTCTGGAGTGTGATCGCTCCGCAGCAGCT
CAGCCCGTCCTTCCGAGCGAAGCACCGCACGGCCCACCGCAGGCTTGGCC
GCCTGTTCATCTTGATGAGCGTCAGCATTGCCCTCGGGCTCGTCCCTCTT
GTCCTCAGCGTGGCCCCCACGACTCCGGCGAGTAAAACCACTCTCGGACC
GAGCGCATTGATTGTGGATTGGAGTGACGGAAGGGAATCGCTCGTCTTCT
CAGGCTACTTCTTGGTAACGGGCTTGCTGGCAGTTCACCACGCAAGAAAC
AAGGGTTTTGCCGATCACAGATAA
back to top

protein sequence of EsuBft1086_2a-0001

>EsuBft1086_2 ID=EsuBft1086_2|Name=EsuBft1086_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=107bp
MHILPAGLWSVIAPQQLSPSFRAKHRTAHRRLGRLFILMSVSIALGLVPL
VLSVAPTTPASKTTLGPSALIVDWSDGRESLVFSGYFLVTGLLAVHHARN
KGFADHR
back to top

mRNA from alignment at Scaffold_133:492002..492672+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1086_2a-0001 ID=EsuBft1086_2a-0001|Name=EsuBft1086_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=671bp|location=Sequence derived from alignment at Scaffold_133:492002..492672+ (Ectocarpus subulatus male Bft15b)
ATGCACATCCTCCCCGCTGGACTCTGGAGTGTGATCGCTCCGCAGCAGCT
CAGCCCGTCCTTCCGAGCGAAGCACCGCACGGCCCACCGCAGGCTTGGCC
GCCTGTTCATCTTGATGAGCGTCAGCATTGCCCTCGGGCTCGTCCCTCTT
GTCCTCAGCGTGGCCCCCACGACTCCGGCGAGTAAAACCACTCTCGGACC
GAGCGCATTGATTGTGGTATGTAGCGATCGCAGCTGAAACGGAACCCTCG
TTCGCTTCATGAACGGATCAAGATTCTCACCCCTAGGTTTGGTGGGGTGG
AAGGAAAAGGCGTTTCGCTTGCCGGTTGAACCGGAGGTTGCGGCAGCAGT
GCATGAAGTATCTTGGTCGGACATATCGAACCGCGGACCTGAGTAGTATG
TGGGAGGAGACTATTTCGACCGAATATTGTTACCTTCAGCGGCACCCTAG
AAGCCGGGGGGGTCGCATGTTTTTCGTATTTGTTTGGTTCATTAGGAGTG
CCTGCAACCGCCATCGTCGCCGAAAATTGAAAATCGTAAGTGTGAATACC
CTCCAACCCACAGGATTGGAGTGACGGAAGGGAATCGCTCGTCTTCTCAG
GCTACTTCTTGGTAACGGGCTTGCTGGCAGTTCACCACGCAAGAAACAAG
GGTTTTGCCGATCACAGATAA
back to top

Coding sequence (CDS) from alignment at Scaffold_133:492002..492672+

>EsuBft1086_2a-0001 ID=EsuBft1086_2a-0001|Name=EsuBft1086_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=324bp|location=Sequence derived from alignment at Scaffold_133:492002..492672+ (Ectocarpus subulatus male Bft15b)
ATGCACATCCTCCCCGCTGGACTCTGGAGTGTGATCGCTCCGCAGCAGCT
CAGCCCGTCCTTCCGAGCGAAGCACCGCACGGCCCACCGCAGGCTTGGCC
GCCTGTTCATCTTGATGAGCGTCAGCATTGCCCTCGGGCTCGTCCCTCTT
GTCCTCAGCGTGGCCCCCACGACTCCGGCGAGTAAAACCACTCTCGGACC
GAGCGCATTGATTGTGGATTGGAGTGACGGAAGGGAATCGCTCGTCTTCT
CAGGCTACTTCTTGGTAACGGGCTTGCTGGCAGTTCACCACGCAAGAAAC
AAGGGTTTTGCCGATCACAGATAA
back to top