EsuBft1086_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1086_10a-0001
Unique NameEsuBft1086_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_133contigScaffold_133:550289..554684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FX24
ProteomeIdEsuBft1086_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length282
Evalue0.00036
EggNOG OGsKOG0078@1|root,KOG0078@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K07901,ko:K07903,ko:K07976
KEGG Pathwayko04144,ko04152,ko04530,ko04972,map04144,map04152,map04530,map04972
DescriptionGTPase activity
COG categoryS
BRITEko00000,ko00001,ko03036,ko04031,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_10aEsuBft1086_10aEctocarpus subulatus male Bft15bgeneScaffold_133 550289..554684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_10a-0001EsuBft1086_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_133 554432..554684 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_10a-0001-exonEsuBft1086_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_133 550289..552497 -
EsuBft1086_10a-0001-exonagat-exon-99869Ectocarpus subulatus male Bft15bexonScaffold_133 553889..554437 -
EsuBft1086_10a-0001-exonagat-exon-99868Ectocarpus subulatus male Bft15bexonScaffold_133 554616..554684 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_10a-0001-exonagat-three_prime_utr-794Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_133 550289..552497 -
EsuBft1086_10a-0001-exonagat-three_prime_utr-795Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_133 553889..554431 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_10a-0001-cdsEsuBft1086_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_133 554432..554437 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1086_10a-0001 ID=EsuBft1086_10a-0001|Name=EsuBft1086_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2827bp|location=Sequence derived from alignment at Scaffold_133:550289..554684- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTTCCAGATATCTACGAAGGACGGCCAGGATGTCGCCAAGGAGTT
CGGCGTCCGCTTTTTCGAGGCTTGACATGCGTTTTGCCCTGCTGTCCGAT
ACCTCTGTCCAGGGTCGTGGATGAGGCGGTTCGAAGCTTGCTGTGGGGAG
GGAAGGGGGGGGCGTCCTCGCACCCACAGGCGCATGCAGCGCAGCGTTTT
TCAGTCTGCTTGCCTACGTGAAACCCATCTCATGCTCCCGGTGTGCAGCG
CCTGTTGAACAGATTTTGCCCCGCCCTTCCGTTGTGTCACCTTTTCAAGA
ATCTACCGTACGCTGCCGTTGGTTGATGTTACACCCCCGAGTACCCATCG
TTTTTTGCCGTCCTCCATGTTTTCCTTGCTTTGATGGTGGTAACCGGGAG
ATGCGTTATTGAGTTTGGCGCTCCTTTCCCTTGACAAACATCGATACATC
GAACGATCAACCAACTTGTGTGCACGCGTGCGAAATGTGTTGGTTTGCGC
GCGGGGGCCATTAGGTGAGCGCGAAGAACGGGTACGGTGTGTCGGACGCG
TTCTACAGCCTTGCGGTGGACATCGTTGCCGCCACCAAGAGGGGGGCAGA
CGATCGGCGAGGGGCCAGATTACTCAGCGGGGGAGCCGCACGCTTGAGAT
CGTCCTTCGCGTCGAAGAAGGCGTCCTTCTTGACGGGCAGAAAACTAGGG
GGCGTTAGCTGGCCCGGAGGAACGGCGACCTCCGGCGGCGGCGGCAGCGG
TGGCACCGGGGAGGGAGGGGAGGGGAGAGATGACGGGGTGCGTACGCCCC
CCCTCCAGGAACGCGATGGCAAGGCGCCCGCTGGGGGAGAAGACGGCGAT
GGAGGGGCGGCGTTAAAGTCGGCGAGCGAGAGGTGCAAGGTTTCTTGACA
GCTGGCGGCGGCACCGAGTTGTACTGTAGTGTTTTGAGTGTTTGTCGGGC
AGGGGTACTGGAGCGATAGGAGAAGGGGCACTTGTGTCGGNCCCCCCCCC
CTGTGTCCCGCGCCCCACCGCGATGGGTGTTTCGGCTGGATTTTTTATTG
TTTTGCTCTCCTGTTTCGTCGACGTGTAACCACTAGAGTGAGTTGGTTGC
TGTGTTTCCTCTTCTCGTCTGCATTCGCTCGCGAGCGAGTTTTGCTGCTG
CTGTGCATGTTGTTTGTTGCTGCTGCGCATGTTGTGCTGTTGGTGTTTTG
AAAAATATAGTCTAGTTGTGCACGGAGAGAGAGGAGGGTGGTCAAGACGA
CCGGTGTTGTGATTGGACGTGACTTGATATTTTTTGGTCGTGTGAGGGTA
TCGGATTAATTCATCGGGCTGCGTTTTTTGTCAGTGTTTCTAACCATCGG
TTATCTCCCTGAGAAAGGAGAGACCGGCAGATTTCATCGGATTGGTGGAG
GGCAGGGCCATTGGGACAGAGACAGACGTGAGTTTCATGTTTCGGTTGTA
AATCTTCTCCCGCTGTGATCCACCATCGTGCTTTACTTCCGTTGCGCGAA
GGTGGGGGAGCCTCCGTATCGAAACAAGAGAACCGCCTTTCAGCCTGGGG
TCCGAAGGGTGCCGTGGAATAGAGTGTGCGCAGCGCGTGGGCATGCGGCA
CACCAAAGGTTTTCGCTTGGACTCCGGGACATTTTTATCCGTGCACTTTG
GCATGCGTTCGAACGTGAAGTGCTGTCGTTCGTCTGTTGGGGCGAACAAA
AATAAAAACAGCTAAAAGAAGGAGTAAAAGTCAAAGGTTCACTGCTGTTC
ATAGGGTTTTTCGTCTTTCGTCTACCTTGCTGTTTGTCGGTTTCGAGTGT
CGGCAAGTTCTGGATTTTTTTTTTTTCCTAGGGGCTGCTTGCTGCACAGC
AGTCTCAGAACGATTCAATGCCCTCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCCCCCCCCCCCCTATATTTTCGTGTCCGCTCTATGCCT
GCGTGCATAGTTTTCCTCATTTCCCTCCTTTTTTCTTGTACTATTGACAG
CTCTTGTGGTTGTGTATTTTGGCGTATGCCAGCAATAGTGTAGGCGAAGG
GTCTGGGAGAGCGGACGGATCGGTTGTTTCACACACAGGTTATGGTAGGA
GCCACCTTGTGAGTACCAAGCACAACAAGAACGCAGTGTTTTGCTCTGTT
TCTTTTCCCGGCTTCGGACAAAGGCCAACTGTGGCGTAAGGGCAAACACG
ATATTCGCGCGTGAGGTTGTTTGCCTGCATCACACGAACGAGTGAGTGCC
CGGGGACATGATTGAGCTCTGCAACACGAAAGCCGACGCACATCACAAGC
ATGGATGGAGTGTATGTGAAAACGCCACCCGAAGCCTTTGTCAAGCACAG
CGAGCCTCGCCATAGGTTTCCCCGGTATCGCCAAGGGGTCGGAGAGGACG
CGCCCCTCGGGGTCAAGGAAGCGGCACGTACGGCGGCTGTTCAGTTGGGA
TTGGGACACCCACCTGACTGGGGTAGGCGGTATCATACGGGCCAGGCGGA
ACACGCAGGCGTGCGCGTGAAGAGGCCGAGACTCGGGTTACAAACCGCTC
GTGTTCAGGACCGCTCCACACGTCCTTCTCCGAGATGATGTGGAGTCATC
TACTAGTCTAAATCGTTCGAACCGCAG
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protein sequence of EsuBft1086_10a-0001

>EsuBft1086_10 ID=EsuBft1086_10|Name=EsuBft1086_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=24bp
MVFQISTKDGQDVAKEFGVRFFEA
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mRNA from alignment at Scaffold_133:550289..554684-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1086_10a-0001 ID=EsuBft1086_10a-0001|Name=EsuBft1086_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4396bp|location=Sequence derived from alignment at Scaffold_133:550289..554684- (Ectocarpus subulatus male Bft15b)
ATGGTGTTCCAGATATCTACGAAGGACGGCCAGGATGTCGCCAAGGAGTT
CGGCGTCCGCTTTTTCGAGGTGTGTGCGTGTGTGCTCGCGCGCGCTCGTA
GTTCATTGCAAATTGCTGCCGGCTTATCGACAACGGCGGATGGCGACGGG
CGTACATTTGAGATTAGGAGGGGGTTGATGAAAGTTGTGATCACTTGTTG
TAGGGTACTAAAACTGTCGTAGCGATAGGGATGTGCGACATTCATAGGCT
TGACATGCGTTTTGCCCTGCTGTCCGATACCTCTGTCCAGGGTCGTGGAT
GAGGCGGTTCGAAGCTTGCTGTGGGGAGGGAAGGGGGGGGCGTCCTCGCA
CCCACAGGCGCATGCAGCGCAGCGTTTTTCAGTCTGCTTGCCTACGTGAA
ACCCATCTCATGCTCCCGGTGTGCAGCGCCTGTTGAACAGATTTTGCCCC
GCCCTTCCGTTGTGTCACCTTTTCAAGAATCTACCGTACGCTGCCGTTGG
TTGATGTTACACCCCCGAGTACCCATCGTTTTTTGCCGTCCTCCATGTTT
TCCTTGCTTTGATGGTGGTAACCGGGAGATGCGTTATTGAGTTTGGCGCT
CCTTTCCCTTGACAAACATCGATACATCGAACGATCAACCAACTTGTGTG
CACGCGTGCGAAATGTGTTGGTTTGCGCGCGGGGGCCATTAGGTGAGCGC
GAAGAACGGGTACGGTGTGTCGGACGCGTTCTACAGCCTTGCGGTGGACA
TCGTTGCCGCCACCAAGAGGGGGGCAGACGATCGGCGAGGGGCCAGGTGA
GAGACACCAAAAGAAACGCCGTCGGCGGCGGGGTTACCGTCGGTAACATG
ACGTAAGATATCACCCCCCCTGGATCGATTCTCACTCAACTCCATATCTC
CATGACGAGGAGGGTTTACAACAACCTATCCAATTTTATTTTTTTTGACA
AGCTCTCGATGAGACGGTTGCGATGCCGCTATTTTCGGCACCGCTTCTTT
TTGTGCTGGGGAGAAATCGAGCTTGGAAAATCAGTTCATGGGGTGTGGTG
TCTTGTGTCACACGTGCGGCAGTGCACATGTCGGGGGCAACCGGGGTTTT
CGACGGCGCTTCCCGCTTGCCTTTGCTGGTGGACGTGTTGCTGCGTTCGG
CCGCGGTGTTGTGTTTGTCGCACAAGCTTGGTTTATGTCAACAGCATGGC
ACTGGTGCTCTGCTGCTGGCCGTACGGCTGCACTCCACCCCGGACCATGG
TTCTATCGGCCCAACAACGTGCGTCTGCTGTAAATTGTTGGGTCTGAGGA
CTCGCGGGCGCGCGACGGGAAGGCACCGCGTTTGCCAAATCGTGTTCCAT
GTTGGCGCCCAAGGATGGTGTAGTTATCGCTCCCCCCCCCCCCCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCTCTCAACACG
GGTACGTTAATCATCCCTGTTGACACCAAACGAAACGTGCCGCACGTGTC
ACTACCGGGAGACTCGCGAAGAGTTTTTTGCGGGGAGCAAGCATATGAAT
CACACGCGTTTCCCTTCCTCCGTGGCTCTCGGGGTTCGGTCGTCTGTAGA
AAAAATATTGCTATCGAACCCCCGCAGATTCATGCATGCTCTTCGCTCGC
AGCAGTCGTCGTTCTGATCCCTGTTGGTCCGGCGTCGTGACGACGGGGTG
CGCCCCCGGATACCGTATATGACACAAGATAACACACCCCTTGGACCGAT
TTTCAAAGCTCGATTACTCCACGACCAAGAGGACGCAGCAGAGAATCGAT
GCAGTTTCGAGAAGCTCTCGACGAAACGGCTTCGAGGCCACCGTTTCCGG
CGGTGTGACTCTTTTTGCTGTTGAGAAATCGAGCTTTGAATATCGGTCCA
GTGGGTGTTATTTTGTGTCGTATACGGTAGATGGATAGATTCACTAGCGG
AACACGCACACACGAAGGTACCGCGTTCAATATGCACAACGGAAGTGTCC
ACGCGCACGACCAGACCGGCTAGGTGTTTTGTCATTGGTTGGCGCCGTCG
ATTCAACACACGCGCACAAGCTCTCGTTGGCGTATCCTCAATCGAGCATG
GGATTGTGTCGATGATCCTCTTAACCGCTCTTGTTTTTTTTCTCATTTGT
CTGTTCGTGCGTCATCATCGAAATCCCCACGAACCAGATTACTCAGCGGG
GGAGCCGCACGCTTGAGATCGTCCTTCGCGTCGAAGAAGGCGTCCTTCTT
GACGGGCAGAAAACTAGGGGGCGTTAGCTGGCCCGGAGGAACGGCGACCT
CCGGCGGCGGCGGCAGCGGTGGCACCGGGGAGGGAGGGGAGGGGAGAGAT
GACGGGGTGCGTACGCCCCCCCTCCAGGAACGCGATGGCAAGGCGCCCGC
TGGGGGAGAAGACGGCGATGGAGGGGCGGCGTTAAAGTCGGCGAGCGAGA
GGTGCAAGGTTTCTTGACAGCTGGCGGCGGCACCGAGTTGTACTGTAGTG
TTTTGAGTGTTTGTCGGGCAGGGGTACTGGAGCGATAGGAGAAGGGGCAC
TTGTGTCGGNCCCCCCCCCCTGTGTCCCGCGCCCCACCGCGATGGGTGTT
TCGGCTGGATTTTTTATTGTTTTGCTCTCCTGTTTCGTCGACGTGTAACC
ACTAGAGTGAGTTGGTTGCTGTGTTTCCTCTTCTCGTCTGCATTCGCTCG
CGAGCGAGTTTTGCTGCTGCTGTGCATGTTGTTTGTTGCTGCTGCGCATG
TTGTGCTGTTGGTGTTTTGAAAAATATAGTCTAGTTGTGCACGGAGAGAG
AGGAGGGTGGTCAAGACGACCGGTGTTGTGATTGGACGTGACTTGATATT
TTTTGGTCGTGTGAGGGTATCGGATTAATTCATCGGGCTGCGTTTTTTGT
CAGTGTTTCTAACCATCGGTTATCTCCCTGAGAAAGGAGAGACCGGCAGA
TTTCATCGGATTGGTGGAGGGCAGGGCCATTGGGACAGAGACAGACGTGA
GTTTCATGTTTCGGTTGTAAATCTTCTCCCGCTGTGATCCACCATCGTGC
TTTACTTCCGTTGCGCGAAGGTGGGGGAGCCTCCGTATCGAAACAAGAGA
ACCGCCTTTCAGCCTGGGGTCCGAAGGGTGCCGTGGAATAGAGTGTGCGC
AGCGCGTGGGCATGCGGCACACCAAAGGTTTTCGCTTGGACTCCGGGACA
TTTTTATCCGTGCACTTTGGCATGCGTTCGAACGTGAAGTGCTGTCGTTC
GTCTGTTGGGGCGAACAAAAATAAAAACAGCTAAAAGAAGGAGTAAAAGT
CAAAGGTTCACTGCTGTTCATAGGGTTTTTCGTCTTTCGTCTACCTTGCT
GTTTGTCGGTTTCGAGTGTCGGCAAGTTCTGGATTTTTTTTTTTTCCTAG
GGGCTGCTTGCTGCACAGCAGTCTCAGAACGATTCAATGCCCTCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCTATATTT
TCGTGTCCGCTCTATGCCTGCGTGCATAGTTTTCCTCATTTCCCTCCTTT
TTTCTTGTACTATTGACAGCTCTTGTGGTTGTGTATTTTGGCGTATGCCA
GCAATAGTGTAGGCGAAGGGTCTGGGAGAGCGGACGGATCGGTTGTTTCA
CACACAGGTTATGGTAGGAGCCACCTTGTGAGTACCAAGCACAACAAGAA
CGCAGTGTTTTGCTCTGTTTCTTTTCCCGGCTTCGGACAAAGGCCAACTG
TGGCGTAAGGGCAAACACGATATTCGCGCGTGAGGTTGTTTGCCTGCATC
ACACGAACGAGTGAGTGCCCGGGGACATGATTGAGCTCTGCAACACGAAA
GCCGACGCACATCACAAGCATGGATGGAGTGTATGTGAAAACGCCACCCG
AAGCCTTTGTCAAGCACAGCGAGCCTCGCCATAGGTTTCCCCGGTATCGC
CAAGGGGTCGGAGAGGACGCGCCCCTCGGGGTCAAGGAAGCGGCACGTAC
GGCGGCTGTTCAGTTGGGATTGGGACACCCACCTGACTGGGGTAGGCGGT
ATCATACGGGCCAGGCGGAACACGCAGGCGTGCGCGTGAAGAGGCCGAGA
CTCGGGTTACAAACCGCTCGTGTTCAGGACCGCTCCACACGTCCTTCTCC
GAGATGATGTGGAGTCATCTACTAGTCTAAATCGTTCGAACCGCAG
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Coding sequence (CDS) from alignment at Scaffold_133:550289..554684-

>EsuBft1086_10a-0001 ID=EsuBft1086_10a-0001|Name=EsuBft1086_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=75bp|location=Sequence derived from alignment at Scaffold_133:550289..554684- (Ectocarpus subulatus male Bft15b)
ATGGTGTTCCAGATATCTACGAAGGACGGCCAGGATGTCGCCAAGGAGTT
CGGCGTCCGCTTTTTCGAGGCTTGA
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