EsuBft1085_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1085_9a-0001
Unique Name	EsuBft1085_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_339	contig	Scaffold_339:209652..211102 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1085_9
Protein domains	IPR006600
Protein domains	PTHR19303
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	84
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1085_9a	EsuBft1085_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_339 209652..211102 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1085_9a-0001-exon	agat-exon-71406	Ectocarpus subulatus male Bft15b	exon	Scaffold_339 209652..210323 -
EsuBft1085_9a-0001-exon	EsuBft1085_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_339 210932..211102 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1085_9a-0001-cds	EsuBft1085_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_339 209652..210323 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1085_9a-0001	EsuBft1085_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_339 209652..211102 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_339:209652..211102-
coding sequence from alignment at Scaffold_339:209652..211102-

spliced messenger RNA

>EsuBft1085_9a-0001 ID=EsuBft1085_9a-0001|Name=EsuBft1085_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=843bp|location=Sequence derived from alignment at Scaffold_339:209652..211102- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAAGCTGATGGATCAGAAGGTGACTCATGAGCAGCTAGCAGATCG
CTTCAAGTGCTCGGAACGGTTGGTCCGGGATGTGAAGAAGAACAGGAAGA
AGTACGAGACCGAGGCTGCTGCAGGACGCGGAGGAAGCAAGAAAAACGTG
CGCACAGGCAATAATCCGGAGGTGGACGCCATAGCTCTTGACCTACTAGA
GAAAGCCCGGAAGACCAAGATGCCCGTCACGCGCGACGTCCTTCGAAGCT
TCGGCCGTGCCGCCAGGGCAACCCTGCTGGCTGATCCAGCAGCTTCTAAG
GAAGTGAAGGCGAGGGTCGAGGATTTCAAGGCCGGCGAAAGGTGGGCCAG
GAACTTCGTGAAGCGCAACATCATCGACAGCGTGAGACTTCATGGAGAGG
CTGGTAGCGTCAACAAGGAGGCCATCAAGGAAGCCATGGAAGAACTCCGC
ATCGAACCCGGAAAGCCGCTCCTGGAGGAAGCGGTGAACGCGATTCAAGG
GTGGGCTACCATCGAGGACGACGATGAAGTGGTTGAGGCTCTCAGAGAGG
ATACGGTGGAAGACATGACGGCACAGCTGGCTGGGACTCGAGTGTCTACC
GGCCGCGAGGAGGAGGACGAGGAGGAGGACAGCGGCGATGACAACACGGG
GCTCGCGCGCCGTGTCCCACCGGCTTATGGTGAACTGTCGTCTCACTTCG
GCGTCCTGGAAGCGGCAGCAGAGGAGAGCGGCAATGGAGACGCGGCGCTC
TACCTAGCGAAAGCGAAGATGGCGATGATTGCAGCGCATTCCAAGAGGCG
GGTGCGCCAGGCAGACATGAGGGAGTTTGTTGCTACGGAGTAA

protein sequence of EsuBft1085_9a-0001

>EsuBft1085_9 ID=EsuBft1085_9|Name=EsuBft1085_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=280bp
MLKLMDQKVTHEQLADRFKCSERLVRDVKKNRKKYETEAAAGRGGSKKNV
RTGNNPEVDAIALDLLEKARKTKMPVTRDVLRSFGRAARATLLADPAASK
EVKARVEDFKAGERWARNFVKRNIIDSVRLHGEAGSVNKEAIKEAMEELR
IEPGKPLLEEAVNAIQGWATIEDDDEVVEALREDTVEDMTAQLAGTRVST
GREEEDEEEDSGDDNTGLARRVPPAYGELSSHFGVLEAAAEESGNGDAAL
YLAKAKMAMIAAHSKRRVRQADMREFVATE

mRNA from alignment at Scaffold_339:209652..211102-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1085_9a-0001 ID=EsuBft1085_9a-0001|Name=EsuBft1085_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1451bp|location=Sequence derived from alignment at Scaffold_339:209652..211102- (Ectocarpus subulatus male Bft15b)
ATGCTGAAGCTGATGGATCAGAAGGTGACTCATGAGCAGCTAGCAGATCG
CTTCAAGTGCTCGGAACGGTTGGTCCGGGATGTGAAGAAGAACAGGAAGA
AGTACGAGACCGAGGCTGCTGCAGGACGCGGAGGAAGCAAGAAAAACGTG
CGCACAGGCAATAATCCGGAGGTGCGCTACTCTGCTGTTGTTTTAAAAAA
ATACGCGTAGTTCCCGCGCCTTCTTTGCCTTTTTTTTTTATTTTTTTTTT
GCCGGGCCTTGTTTGCAAAGAGTTTTCGTTTTTGCAAGGACCTTTTTCTG
TAGCCTTGTTCGTCTATCTGATGTTCTTGTTCTTTTTTCTTCTTCTCTTG
TCAAGTTGTTCCCTGTTCTCTGTTCCCTTTCCCCATGTTTCTTCTATTTC
TCGACTGTTACAGTACTTGTTGAGCTTATTCCCTCTCGTCGTTCGTTTGT
GTCTTTTTTTGTGTTACCTTTTTTTTCAACTTTCTTTGTTGTTTTATCGT
TCGTGCGCTGCTGCGCCAGCATATAAACTGCGAACCAAAAATGTGTACTT
GTTTGTACTGTACTGGTACATTACATCGCACGCACACCTATTCTTTCAAA
CGAGTTACAATACATAAATACACATGCGGATGCAGCGGCGAGCTTCTGTG
GTTTTTCAAATGCCCGGAAATGTTTCCTTCCCACTACGATGCACTGTGCA
ACGAGGCTTAATGTTCGAAACTAATCGTGCTATCTTTTGTACCCTCTTTA
TTGTTTACTCCTCGTTTGACGGTCAATAGGTGGACGCCATAGCTCTTGAC
CTACTAGAGAAAGCCCGGAAGACCAAGATGCCCGTCACGCGCGACGTCCT
TCGAAGCTTCGGCCGTGCCGCCAGGGCAACCCTGCTGGCTGATCCAGCAG
CTTCTAAGGAAGTGAAGGCGAGGGTCGAGGATTTCAAGGCCGGCGAAAGG
TGGGCCAGGAACTTCGTGAAGCGCAACATCATCGACAGCGTGAGACTTCA
TGGAGAGGCTGGTAGCGTCAACAAGGAGGCCATCAAGGAAGCCATGGAAG
AACTCCGCATCGAACCCGGAAAGCCGCTCCTGGAGGAAGCGGTGAACGCG
ATTCAAGGGTGGGCTACCATCGAGGACGACGATGAAGTGGTTGAGGCTCT
CAGAGAGGATACGGTGGAAGACATGACGGCACAGCTGGCTGGGACTCGAG
TGTCTACCGGCCGCGAGGAGGAGGACGAGGAGGAGGACAGCGGCGATGAC
AACACGGGGCTCGCGCGCCGTGTCCCACCGGCTTATGGTGAACTGTCGTC
TCACTTCGGCGTCCTGGAAGCGGCAGCAGAGGAGAGCGGCAATGGAGACG
CGGCGCTCTACCTAGCGAAAGCGAAGATGGCGATGATTGCAGCGCATTCC
AAGAGGCGGGTGCGCCAGGCAGACATGAGGGAGTTTGTTGCTACGGAGTA
A

Coding sequence (CDS) from alignment at Scaffold_339:209652..211102-

>EsuBft1085_9a-0001 ID=EsuBft1085_9a-0001|Name=EsuBft1085_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=843bp|location=Sequence derived from alignment at Scaffold_339:209652..211102- (Ectocarpus subulatus male Bft15b)
ATGCTGAAGCTGATGGATCAGAAGGTGACTCATGAGCAGCTAGCAGATCG
CTTCAAGTGCTCGGAACGGTTGGTCCGGGATGTGAAGAAGAACAGGAAGA
AGTACGAGACCGAGGCTGCTGCAGGACGCGGAGGAAGCAAGAAAAACGTG
CGCACAGGCAATAATCCGGAGGTGGACGCCATAGCTCTTGACCTACTAGA
GAAAGCCCGGAAGACCAAGATGCCCGTCACGCGCGACGTCCTTCGAAGCT
TCGGCCGTGCCGCCAGGGCAACCCTGCTGGCTGATCCAGCAGCTTCTAAG
GAAGTGAAGGCGAGGGTCGAGGATTTCAAGGCCGGCGAAAGGTGGGCCAG
GAACTTCGTGAAGCGCAACATCATCGACAGCGTGAGACTTCATGGAGAGG
CTGGTAGCGTCAACAAGGAGGCCATCAAGGAAGCCATGGAAGAACTCCGC
ATCGAACCCGGAAAGCCGCTCCTGGAGGAAGCGGTGAACGCGATTCAAGG
GTGGGCTACCATCGAGGACGACGATGAAGTGGTTGAGGCTCTCAGAGAGG
ATACGGTGGAAGACATGACGGCACAGCTGGCTGGGACTCGAGTGTCTACC
GGCCGCGAGGAGGAGGACGAGGAGGAGGACAGCGGCGATGACAACACGGG
GCTCGCGCGCCGTGTCCCACCGGCTTATGGTGAACTGTCGTCTCACTTCG
GCGTCCTGGAAGCGGCAGCAGAGGAGAGCGGCAATGGAGACGCGGCGCTC
TACCTAGCGAAAGCGAAGATGGCGATGATTGCAGCGCATTCCAAGAGGCG
GGTGCGCCAGGCAGACATGAGGGAGTTTGTTGCTACGGAGTAA