EsuBft1085_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1085_7a-0001
Unique Name	EsuBft1085_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_339	contig	Scaffold_339:213452..214709 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1085_7
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	125
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1085_7a	EsuBft1085_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_339 213452..214709 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1085_7a-0001-exon	EsuBft1085_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_339 213452..214709 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1085_7a-0001-cds	EsuBft1085_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_339 213452..214666 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1085_7a-0001-exon	agat-three_prime_utr-792	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_339 214667..214709 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1085_7a-0001	EsuBft1085_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_339 213452..214666 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_339:213452..214709+
coding sequence from alignment at Scaffold_339:213452..214709+

spliced messenger RNA

>EsuBft1085_7a-0001 ID=EsuBft1085_7a-0001|Name=EsuBft1085_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1258bp|location=Sequence derived from alignment at Scaffold_339:213452..214709+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCCACCCAGCTTGTGGTCAACCCTGAGGCGGCCTCTCTCGCTGG
TGGAGCCGTCTCCACCCCTGCGATCCGAGCAACGACCGCTGTCGCCGGCG
AGAGGTCTTCGGCTACCCCCCGCCCGGCGTCGCCGGTCCCCCCGGCCTCG
CTTTCCACGGCTTCGGTAGCAACTGCGACTTCAGCTGCCGCCGCTGCTTC
GGCGGCCCCCACTGCTTCGGCGGCCTCCGCTGTTTCGGCAGCCCCCGCTG
TTTCGGCAGCCCCAGCGGCTTCGGCGGCGCTCGCGGCTTTGGCGGCACGC
GCGGCCTCGGCGGCACCCCCGACCTCGTCGGCACCTCCGCAGCGCCCCCG
TTGGGTTTGTCCAATCCTGTGGGACTGCAAGACCGACGACCAGCGGCTGC
TGGCCCTCTCCCCCCGGGTTCGCCGGGAAGCGGGCGAGGCGGTCGACCTC
GACCGCGAAGCGGCTCTTCGGGACCGCAACGCTCGGCTCGATGCCGAGTT
CATCAAAGAGACTGCTGAACGCCAGGCCAAAATCGCGGTGTGCCGTGCGC
GCGGCGCCACCAACACCGATACCATCTTGGCCTACGCCCAGCGGAAACAA
GCGCAGGAACGGGAAGAGGCCCTGCTGGCCTCCCAGCTCGCCGACGACCG
CCGCCAGGAGGACGCGTTGGTCGCCGAGCAGGCCCGAGCTGATCGACAGC
GCGAACACGATCTTCGAGTTCGGGCGGGGCGCTCCGTGCCGGGACCGGCC
CCTACTGCCGCTCCTGCTCCGTCGGCATCGGTGGCTCGGACGTACGCCGT
TGCCGCCTCCAGCCCTGTGACTCGGTCTTCCGCACGGTCGCGCTCCGTCA
CCTTTGAGGCCGGGGACGCTAGATTCACCCAGGTCAGGTTGTCCGACGTT
GCCAGGTACGCCCAGGTCAACTATCAGGTAGACGACCGCAAGGCCGTCAT
GGATCGAGCGACTGGCGTGCCCACGGCCCTGTCGTCGGCTTGCTCCATCC
AGGACGCCGCCGACGTGGCAAACGGGTCTCGGCCCGACCTCCAAGACTTG
GTGAGCTGCCTCCTCGTGGCGATGCGGGCGGCCATCATGAACGCAACGTT
TCCGGTGGTGTGGCCCGGCTGCACAGTGGCTTCTCCGGCATCTTCGGCGT
TCCAGCAGCCCCAAGGCCGGCCGCGTCAAGGCCAAGCCGGCCCAGCGCAC
CGTGCGAGAGAGTAGCTCGGGCGAGGACTCGGGCTGGAGTTCTGCGGGAG
CGTCTCGC

protein sequence of EsuBft1085_7a-0001

>EsuBft1085_7 ID=EsuBft1085_7|Name=EsuBft1085_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=404bp
MVATQLVVNPEAASLAGGAVSTPAIRATTAVAGERSSATPRPASPVPPAS
LSTASVATATSAAAAASAAPTASAASAVSAAPAVSAAPAASAALAALAAR
AASAAPPTSSAPPQRPRWVCPILWDCKTDDQRLLALSPRVRREAGEAVDL
DREAALRDRNARLDAEFIKETAERQAKIAVCRARGATNTDTILAYAQRKQ
AQEREEALLASQLADDRRQEDALVAEQARADRQREHDLRVRAGRSVPGPA
PTAAPAPSASVARTYAVAASSPVTRSSARSRSVTFEAGDARFTQVRLSDV
ARYAQVNYQVDDRKAVMDRATGVPTALSSACSIQDAADVANGSRPDLQDL
VSCLLVAMRAAIMNATFPVVWPGCTVASPASSAFQQPQGRPRQGQAGPAH
RARE

mRNA from alignment at Scaffold_339:213452..214709+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1085_7a-0001 ID=EsuBft1085_7a-0001|Name=EsuBft1085_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1258bp|location=Sequence derived from alignment at Scaffold_339:213452..214709+ (Ectocarpus subulatus male Bft15b)
ATGGTCGCCACCCAGCTTGTGGTCAACCCTGAGGCGGCCTCTCTCGCTGG
TGGAGCCGTCTCCACCCCTGCGATCCGAGCAACGACCGCTGTCGCCGGCG
AGAGGTCTTCGGCTACCCCCCGCCCGGCGTCGCCGGTCCCCCCGGCCTCG
CTTTCCACGGCTTCGGTAGCAACTGCGACTTCAGCTGCCGCCGCTGCTTC
GGCGGCCCCCACTGCTTCGGCGGCCTCCGCTGTTTCGGCAGCCCCCGCTG
TTTCGGCAGCCCCAGCGGCTTCGGCGGCGCTCGCGGCTTTGGCGGCACGC
GCGGCCTCGGCGGCACCCCCGACCTCGTCGGCACCTCCGCAGCGCCCCCG
TTGGGTTTGTCCAATCCTGTGGGACTGCAAGACCGACGACCAGCGGCTGC
TGGCCCTCTCCCCCCGGGTTCGCCGGGAAGCGGGCGAGGCGGTCGACCTC
GACCGCGAAGCGGCTCTTCGGGACCGCAACGCTCGGCTCGATGCCGAGTT
CATCAAAGAGACTGCTGAACGCCAGGCCAAAATCGCGGTGTGCCGTGCGC
GCGGCGCCACCAACACCGATACCATCTTGGCCTACGCCCAGCGGAAACAA
GCGCAGGAACGGGAAGAGGCCCTGCTGGCCTCCCAGCTCGCCGACGACCG
CCGCCAGGAGGACGCGTTGGTCGCCGAGCAGGCCCGAGCTGATCGACAGC
GCGAACACGATCTTCGAGTTCGGGCGGGGCGCTCCGTGCCGGGACCGGCC
CCTACTGCCGCTCCTGCTCCGTCGGCATCGGTGGCTCGGACGTACGCCGT
TGCCGCCTCCAGCCCTGTGACTCGGTCTTCCGCACGGTCGCGCTCCGTCA
CCTTTGAGGCCGGGGACGCTAGATTCACCCAGGTCAGGTTGTCCGACGTT
GCCAGGTACGCCCAGGTCAACTATCAGGTAGACGACCGCAAGGCCGTCAT
GGATCGAGCGACTGGCGTGCCCACGGCCCTGTCGTCGGCTTGCTCCATCC
AGGACGCCGCCGACGTGGCAAACGGGTCTCGGCCCGACCTCCAAGACTTG
GTGAGCTGCCTCCTCGTGGCGATGCGGGCGGCCATCATGAACGCAACGTT
TCCGGTGGTGTGGCCCGGCTGCACAGTGGCTTCTCCGGCATCTTCGGCGT
TCCAGCAGCCCCAAGGCCGGCCGCGTCAAGGCCAAGCCGGCCCAGCGCAC
CGTGCGAGAGAGTAGCTCGGGCGAGGACTCGGGCTGGAGTTCTGCGGGAG
CGTCTCGC

Coding sequence (CDS) from alignment at Scaffold_339:213452..214709+

>EsuBft1085_7a-0001 ID=EsuBft1085_7a-0001|Name=EsuBft1085_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1215bp|location=Sequence derived from alignment at Scaffold_339:213452..214709+ (Ectocarpus subulatus male Bft15b)
ATGGTCGCCACCCAGCTTGTGGTCAACCCTGAGGCGGCCTCTCTCGCTGG
TGGAGCCGTCTCCACCCCTGCGATCCGAGCAACGACCGCTGTCGCCGGCG
AGAGGTCTTCGGCTACCCCCCGCCCGGCGTCGCCGGTCCCCCCGGCCTCG
CTTTCCACGGCTTCGGTAGCAACTGCGACTTCAGCTGCCGCCGCTGCTTC
GGCGGCCCCCACTGCTTCGGCGGCCTCCGCTGTTTCGGCAGCCCCCGCTG
TTTCGGCAGCCCCAGCGGCTTCGGCGGCGCTCGCGGCTTTGGCGGCACGC
GCGGCCTCGGCGGCACCCCCGACCTCGTCGGCACCTCCGCAGCGCCCCCG
TTGGGTTTGTCCAATCCTGTGGGACTGCAAGACCGACGACCAGCGGCTGC
TGGCCCTCTCCCCCCGGGTTCGCCGGGAAGCGGGCGAGGCGGTCGACCTC
GACCGCGAAGCGGCTCTTCGGGACCGCAACGCTCGGCTCGATGCCGAGTT
CATCAAAGAGACTGCTGAACGCCAGGCCAAAATCGCGGTGTGCCGTGCGC
GCGGCGCCACCAACACCGATACCATCTTGGCCTACGCCCAGCGGAAACAA
GCGCAGGAACGGGAAGAGGCCCTGCTGGCCTCCCAGCTCGCCGACGACCG
CCGCCAGGAGGACGCGTTGGTCGCCGAGCAGGCCCGAGCTGATCGACAGC
GCGAACACGATCTTCGAGTTCGGGCGGGGCGCTCCGTGCCGGGACCGGCC
CCTACTGCCGCTCCTGCTCCGTCGGCATCGGTGGCTCGGACGTACGCCGT
TGCCGCCTCCAGCCCTGTGACTCGGTCTTCCGCACGGTCGCGCTCCGTCA
CCTTTGAGGCCGGGGACGCTAGATTCACCCAGGTCAGGTTGTCCGACGTT
GCCAGGTACGCCCAGGTCAACTATCAGGTAGACGACCGCAAGGCCGTCAT
GGATCGAGCGACTGGCGTGCCCACGGCCCTGTCGTCGGCTTGCTCCATCC
AGGACGCCGCCGACGTGGCAAACGGGTCTCGGCCCGACCTCCAAGACTTG
GTGAGCTGCCTCCTCGTGGCGATGCGGGCGGCCATCATGAACGCAACGTT
TCCGGTGGTGTGGCCCGGCTGCACAGTGGCTTCTCCGGCATCTTCGGCGT
TCCAGCAGCCCCAAGGCCGGCCGCGTCAAGGCCAAGCCGGCCCAGCGCAC
CGTGCGAGAGAGTAG