EsuBft1085_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1085_6a-0001
Unique NameEsuBft1085_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_339contigScaffold_339:214823..215957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1085_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length96
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_6aEsuBft1085_6aEctocarpus subulatus male Bft15bgeneScaffold_339 214823..215957 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_6a-0001-exonagat-exon-71405Ectocarpus subulatus male Bft15bexonScaffold_339 214823..215420 -
EsuBft1085_6a-0001-exonEsuBft1085_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_339 215595..215957 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_6a-0001-exonagat-three_prime_utr-791Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_339 214823..215405 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_6a-0001-cdsEsuBft1085_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_339 215406..215420 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_6a-0001-exonagat-five_prime_utr-504Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_339 215754..215957 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_6a-0001EsuBft1085_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_339 215406..215753 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1085_6a-0001 ID=EsuBft1085_6a-0001|Name=EsuBft1085_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=961bp|location=Sequence derived from alignment at Scaffold_339:214823..215957- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCCGTTTCACTAGCTGAAAGTAACCCGTAATGGCAAGGACCAGATCGGC
GGCAGAGGGCTTGTTAGGGGTGATCACACTCAAGAGTTTTTTTTTCGAGA
GGACGTTCCCATCCACGCACAAAATCAGTGCCTGTCAAACCTTCACTCTG
CGCATCGCACAACAGCAAAACATCGGACAAAGCCGTTCTTGTTGTGCGAA
TAAGATGCTGATAGCCATCTCCCGGCAACAGAGTAGCGGAGAAGGGCATC
GTAGCGACATTCTCAACTTTTTTCAAGTTGAGGGTGATGTACGCTCGTTG
TACAGTAGCTACATGAGCATTACGAGCAGCTGCATCAGTCGCATCGATCG
ATGCTTGACGAGTTGTTTACCGTGTTAGAAGAAAGTGGCAATGCACGGTC
ATCGGAAACAGCAGGGGGTGCGGCGACGGCTACCGAAGCAGCTGTGGAAG
CATGGTCTGAGGACAACATACTACGCGAAACACCCGGCACACGTGGTACA
AGCGCCGAAGGGGGGTTGAGGTTCGAAAACCCATGGTTCTGCATCAGTCG
TGGATCTACGGCATGGCGAGCGGTAGTAAGGCTAAGGGGTGCAAAGGTTT
CCAAAGAAACAGGGGCGGCCGAAACCGGGGCTGAGTTCGAAAGCTCAACG
CTACGTACACGTCCGGAGTCTACAGCATTGAATGCGGCAGAAGGGACACA
AGGTGCAAAGGGGTCCGAAGAAACGGGGGAAGCCAAAGGCGGGGGAAGGT
CCGAAAACGCAACACGACACAAAAGCCCTGAGTCCGAGGAAACAGGGGGG
GGCGAAACCATACCAACAACCGAAGTTGAGGGGGGGGGCGAAGCCTGAGA
AAAAAATAATCATGTAAAAGGAAACGATCACTCAACGCCGCATCCATAAG
GGACGGGACTAGTTGCCTGGAAGAAGAGCCCTTCCGAGCGTCGTACTTCC
GGGTGAGACTC
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protein sequence of EsuBft1085_6a-0001

>EsuBft1085_6 ID=EsuBft1085_6|Name=EsuBft1085_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=57bp
MLIAISRQQSSGEGHRSDILNFFQVEGDVRSLYSSYMSITSSCISRIDRC
LTSCLPC
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mRNA from alignment at Scaffold_339:214823..215957-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1085_6a-0001 ID=EsuBft1085_6a-0001|Name=EsuBft1085_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1135bp|location=Sequence derived from alignment at Scaffold_339:214823..215957- (Ectocarpus subulatus male Bft15b)
CTCCGTTTCACTAGCTGAAAGTAACCCGTAATGGCAAGGACCAGATCGGC
GGCAGAGGGCTTGTTAGGGGTGATCACACTCAAGAGTTTTTTTTTCGAGA
GGACGTTCCCATCCACGCACAAAATCAGTGCCTGTCAAACCTTCACTCTG
CGCATCGCACAACAGCAAAACATCGGACAAAGCCGTTCTTGTTGTGCGAA
TAAGATGCTGATAGCCATCTCCCGGCAACAGAGTAGCGGAGAAGGGCATC
GTAGCGACATTCTCAACTTTTTTCAAGTTGAGGGTGATGTACGCTCGTTG
TACAGTAGCTACATGAGCATTACGAGCAGCTGCATCAGTCGCATCGATCG
ATGCTTGACGAGTGTTTACCGTGTTAGAAGAAAGTGGCAATGCACGGTCA
TCGGAAACAGCAGGGGGTGCGGCGACGGCTACCGAAGCAGCTGTGGAAGC
ATGGTCTGAGGACAACATACTACGCGAAACACCCGGCACACGNATTACGA
GCAGCTGCATCAGTCGCATCGATCGATGCTTGACGAGTGTTTACCGTGTT
AGAAGAAAGTGGCAATGCACGGTCATCGGAAACAGCAGGGGGTGCGGCGA
CGGCTACCGAAGCAGCTGTGGAAGCATGGTCTGAGGACAACATACTACGC
GAAACACCCGGCACACGTGGTACAAGCGCCGAAGGGGGGTTGAGGTTCGA
AAACCCATGGTTCTGCATCAGTCGTGGATCTACGGCATGGCGAGCGGTAG
TAAGGCTAAGGGGTGCAAAGGTTTCCAAAGAAACAGGGGCGGCCGAAACC
GGGGCTGAGTTCGAAAGCTCAACGCTACGTACACGTCCGGAGTCTACAGC
ATTGAATGCGGCAGAAGGGACACAAGGTGCAAAGGGGTCCGAAGAAACGG
GGGAAGCCAAAGGCGGGGGAAGGTCCGAAAACGCAACACGACACAAAAGC
CCTGAGTCCGAGGAAACAGGGGGGGGCGAAACCATACCAACAACCGAAGT
TGAGGGGGGGGGCGAAGCCTGAGAAAAAAATAATCATGTAAAAGGAAACG
ATCACTCAACGCCGCATCCATAAGGGACGGGACTAGTTGCCTGGAAGAAG
AGCCCTTCCGAGCGTCGTACTTCCGGGTGAGACTC
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Coding sequence (CDS) from alignment at Scaffold_339:214823..215957-

>EsuBft1085_6a-0001 ID=EsuBft1085_6a-0001|Name=EsuBft1085_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=174bp|location=Sequence derived from alignment at Scaffold_339:214823..215957- (Ectocarpus subulatus male Bft15b)
ATGCTGATAGCCATCTCCCGGCAACAGAGTAGCGGAGAAGGGCATCGTAG
CGACATTCTCAACTTTTTTCAAGTTGAGGGTGATGTACGCTCGTTGTACA
GTAGCTACATGAGCATTACGAGCAGCTGCATCAGTCGCATCGATCGATGC
TTGACGAGTTGTTTACCGTGTTAG
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