EsuBft1085_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1085_5a-0001
Unique Name	EsuBft1085_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_339	contig	Scaffold_339:220051..220756 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	946362.XP_004988912.1
ProteomeId	EsuBft1085_5
Protein domains	SSF56672
Protein domains	G3DSA
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon 297 os:drosophila melanogaster gn:pol pe:3 s [Automatic annotation]
Nb exon	1
Max annot lvl	33154\|Opisthokonta
Length	706
Hectar predicted targeting category	other localisation
Evalue	1.9e-29
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,39ZVA@33154\|Opisthokonta
Date last modified	2016-06-14
Date creation	2016-06-14
Description	dUTP metabolic process
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824
GO	0090304

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1085_5a	EsuBft1085_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_339 220051..220756 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1085_5a-0001-exon	EsuBft1085_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_339 220051..220756 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1085_5a-0001-cds	EsuBft1085_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_339 220051..220521 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1085_5a-0001-exon	agat-three_prime_utr-790	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_339 220522..220756 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1085_5a-0001	EsuBft1085_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_339 220051..220521 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_339:220051..220756+
coding sequence from alignment at Scaffold_339:220051..220756+

spliced messenger RNA

>EsuBft1085_5a-0001 ID=EsuBft1085_5a-0001|Name=EsuBft1085_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=706bp|location=Sequence derived from alignment at Scaffold_339:220051..220756+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATCTTCGTTCCACCAATTCACGGTGCACCGCGATACAATCCCTTT
GAACGCATTCGTGACGTCTTCCGGACTTTTCGAGTGGTTGAAGATGCCTC
AAGGCAGTTCGGCTGCCCTTAGGTGGTTTTGCAACGTTGTCAACGAAGTC
ATCAAAAATTTCCGCGGTGTTGCATCGTACTTGGATGATTTGATCGTCTT
TGATGACACCCCTGCTACTCATGTTGGTACCATGCACGCCCTCTTTGAAC
GCTTGCGTACGCACAACTTGAAACTCACGCCTCCGAAAGCTACTATTGGC
GCTTCTAAGGCAGACTTCCTCGGACACACCATCTCCCCTGACGGCGTTAG
GCTGAACGGTGCCAAGGTTTCGGCCCTCACCAAACTGCCTATGCCCAAGG
ATGTCAAGCAACTCTGTTCCCTTCTCGGTGGTCTCAGCTACTACCGTAAG
TTCCTCCCCAACATGGCTTAACGCATTCGACCTCTGACTACTCTACTCGA
GAAGCAGGAGAAGTTTATGTTCACCCCTTCCATGGAGCAAGCCGTTCGCG
TTTTATTAACTGAGTTGGCCAATCCTCCTGTTTTGGTTTATCCAGATTGG
GATGCCGTTTCAGACGGCTCGCGACCTTTTCATCTTTTCTGTGATGCTAG
TCGCGATGGGTTTGGTGGGACTCTCGAACAAGAACAGCCAGATGGTTCAA
TTCGCC

protein sequence of EsuBft1085_5a-0001

>EsuBft1085_5 ID=EsuBft1085_5|Name=EsuBft1085_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=156bp
MKSSFHQFTVHRDTIPLNAFVTSSGLFEWLKMPQGSSAALRWFCNVVNEV
IKNFRGVASYLDDLIVFDDTPATHVGTMHALFERLRTHNLKLTPPKATIG
ASKADFLGHTISPDGVRLNGAKVSALTKLPMPKDVKQLCSLLGGLSYYRK
FLPNMA

mRNA from alignment at Scaffold_339:220051..220756+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1085_5a-0001 ID=EsuBft1085_5a-0001|Name=EsuBft1085_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=706bp|location=Sequence derived from alignment at Scaffold_339:220051..220756+ (Ectocarpus subulatus male Bft15b)
ATGAAATCTTCGTTCCACCAATTCACGGTGCACCGCGATACAATCCCTTT
GAACGCATTCGTGACGTCTTCCGGACTTTTCGAGTGGTTGAAGATGCCTC
AAGGCAGTTCGGCTGCCCTTAGGTGGTTTTGCAACGTTGTCAACGAAGTC
ATCAAAAATTTCCGCGGTGTTGCATCGTACTTGGATGATTTGATCGTCTT
TGATGACACCCCTGCTACTCATGTTGGTACCATGCACGCCCTCTTTGAAC
GCTTGCGTACGCACAACTTGAAACTCACGCCTCCGAAAGCTACTATTGGC
GCTTCTAAGGCAGACTTCCTCGGACACACCATCTCCCCTGACGGCGTTAG
GCTGAACGGTGCCAAGGTTTCGGCCCTCACCAAACTGCCTATGCCCAAGG
ATGTCAAGCAACTCTGTTCCCTTCTCGGTGGTCTCAGCTACTACCGTAAG
TTCCTCCCCAACATGGCTTAACGCATTCGACCTCTGACTACTCTACTCGA
GAAGCAGGAGAAGTTTATGTTCACCCCTTCCATGGAGCAAGCCGTTCGCG
TTTTATTAACTGAGTTGGCCAATCCTCCTGTTTTGGTTTATCCAGATTGG
GATGCCGTTTCAGACGGCTCGCGACCTTTTCATCTTTTCTGTGATGCTAG
TCGCGATGGGTTTGGTGGGACTCTCGAACAAGAACAGCCAGATGGTTCAA
TTCGCC

Coding sequence (CDS) from alignment at Scaffold_339:220051..220756+

>EsuBft1085_5a-0001 ID=EsuBft1085_5a-0001|Name=EsuBft1085_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=471bp|location=Sequence derived from alignment at Scaffold_339:220051..220756+ (Ectocarpus subulatus male Bft15b)
ATGAAATCTTCGTTCCACCAATTCACGGTGCACCGCGATACAATCCCTTT
GAACGCATTCGTGACGTCTTCCGGACTTTTCGAGTGGTTGAAGATGCCTC
AAGGCAGTTCGGCTGCCCTTAGGTGGTTTTGCAACGTTGTCAACGAAGTC
ATCAAAAATTTCCGCGGTGTTGCATCGTACTTGGATGATTTGATCGTCTT
TGATGACACCCCTGCTACTCATGTTGGTACCATGCACGCCCTCTTTGAAC
GCTTGCGTACGCACAACTTGAAACTCACGCCTCCGAAAGCTACTATTGGC
GCTTCTAAGGCAGACTTCCTCGGACACACCATCTCCCCTGACGGCGTTAG
GCTGAACGGTGCCAAGGTTTCGGCCCTCACCAAACTGCCTATGCCCAAGG
ATGTCAAGCAACTCTGTTCCCTTCTCGGTGGTCTCAGCTACTACCGTAAG
TTCCTCCCCAACATGGCTTAA