EsuBft1085_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1085_12a-0001
Unique NameEsuBft1085_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_339contigScaffold_339:177227..179015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1085_12
Protein domainsSSF140860
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Length99
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-13_000760.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_12aEsuBft1085_12aEctocarpus subulatus male Bft15bgeneScaffold_339 177227..179015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_12a-0001EsuBft1085_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_339 177227..179015 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_12a-0001-exonagat-exon-71409Ectocarpus subulatus male Bft15bexonScaffold_339 177227..177238 +
EsuBft1085_12a-0001-exonEsuBft1085_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_339 177516..177682 +
EsuBft1085_12a-0001-exonagat-exon-71410Ectocarpus subulatus male Bft15bexonScaffold_339 178039..178298 +
EsuBft1085_12a-0001-exonagat-exon-71412Ectocarpus subulatus male Bft15bexonScaffold_339 178412..178580 +
EsuBft1085_12a-0001-exonagat-exon-71411Ectocarpus subulatus male Bft15bexonScaffold_339 178634..179015 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_12a-0001-cdsEsuBft1085_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_339 177227..177238 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1085_12a-0001 ID=EsuBft1085_12a-0001|Name=EsuBft1085_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=990bp|location=Sequence derived from alignment at Scaffold_339:177227..179015+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCTTCTAACGTTGGCACGATCGGAGGGAGCGCGAAACGCGTTCG
GACGGAGAATGTCGCCGTGACCAATATGGATATCGTCCGCGGCTTGGCGC
GATTCGTCGCCGACAAGCAGTTCCTATTCTTTGCGCCAGTCTCGCGTAGC
TGGAGAGCGCGTGGGGGGAGCGGGCGACGCTTCGCGTGTGGCCTCGCTCG
GGGTGGCGTCGATTGGTGCTCAACCACGGCGCGGGCGGTTAACCTAGATC
TTCTCAGGTGGGCGACGAAGCAGGGATATCCCTGGACTAGGTCACTGTCC
GCCGCAGCAGCCGAGGGCGGCAATATCGCGGCCCTCGAGTGGCTGAAAGA
GAATGGTTGCTTGCCAACGGAGGCGACCTGCGCTGGCGCGGCATTAGGCG
GGCATCTGGACGCGTTGAAGTGGTGCCGGGCCAACGAGTCTGCCGGGGGG
GGGCAGCTCGCGGTGCTCCGTTGGCTGCGTCAGGAGGGGTGCCAGTGGGA
CTCGAACACGCCTTCGAGTGCTTCGAAAGGGGGCCACCTCGAGGCCCTGC
AGTACGCGATTCAGAACGAATGCCGGGCGTCCGACGCGGTGTGCTCGAAT
GCCGCCAGACCTGACGAGGGTCTATACGTTGGGAGCCCAGGGGGGGAGCA
CGTGGATGTTATCAAGTGGGGCAGGGAGAACGGCGGCGGTTGCAACAGCG
AAGCAGGCTACTGGGCCGCCGTTGGGGGTCACGTACATGTGAAAGAGTAT
TTTAACACGATTGGGCTTTCATGGGGAGAGGAGTCATCGCTGTTTCCGGC
GGTAAGAAGGGCTCAGACGGAGCTTGGTTGCACGGCTGCCAAGAGAAGCC
GACTGGAGTGCGTAGCCTCGTGGATTCTGGCGAACAGAGCACCCGCCCGT
GGCGATGATGTCTCTGTGGAAGAACGCAGAGCGGCCTGTCTTCTCCTGAA
GAATCCGAGCGGAGAAGTCGGAGATGGAGAAGACAACTGA
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protein sequence of EsuBft1085_12a-0001

>EsuBft1085_12 ID=EsuBft1085_12|Name=EsuBft1085_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=329bp
MSPSNVGTIGGSAKRVRTENVAVTNMDIVRGLARFVADKQFLFFAPVSRS
WRARGGSGRRFACGLARGGVDWCSTTARAVNLDLLRWATKQGYPWTRSLS
AAAAEGGNIAALEWLKENGCLPTEATCAGAALGGHLDALKWCRANESAGG
GQLAVLRWLRQEGCQWDSNTPSSASKGGHLEALQYAIQNECRASDAVCSN
AARPDEGLYVGSPGGEHVDVIKWGRENGGGCNSEAGYWAAVGGHVHVKEY
FNTIGLSWGEESSLFPAVRRAQTELGCTAAKRSRLECVASWILANRAPAR
GDDVSVEERRAACLLLKNPSGEVGDGEDN
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mRNA from alignment at Scaffold_339:177227..179015+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1085_12a-0001 ID=EsuBft1085_12a-0001|Name=EsuBft1085_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1789bp|location=Sequence derived from alignment at Scaffold_339:177227..179015+ (Ectocarpus subulatus male Bft15b)
ATGTCGCCTTCTGTGCGTTGCGGCTTGTTCGCCCGTCCTTCGCATTGGCA
TATCCCGACTGCCTTCCGAAGTGGGAACCAACTCGACCCTCGAACGCGTA
CAAGAGCGGATACGAATGAGGAGATGACTCCCCTCCACGAATCTATCACC
TCAAAATGGGATATACTTGAATGGCCTGGTCACCCTCGCTGTGTACACGC
AAAGTCCACGAGAACCAGAAAAGTGTCTCGTCCGGAACGTCTAGCGATCC
CCCCTGCCTCTAAATCGTTACGTTGTCATTCGCGCGCAGAACGTTGGCAC
GATCGGAGGGAGCGCGAAACGCGTTCGGACGGAGAATGTCGCCGTGACCA
ATATGGATATCGTCCGCGGCTTGGCGCGATTCGTCGCCGACAAGCAGTTC
CTATTCTTTGCGCCAGTCTCGCGTAGCTGGAGAGCGCGTGGGGGGAGCGG
GCGACGGTGACAAGTTGGGTCACGCCTCACACCACGCCCTTTCAGCTTCA
GTACAGGTATCGCCCGCAATTGTTGTTGTTGTTGTTGTCTTGGCCGTTTC
GGTCTGTGCTATGTATTACCTCGCAATATCCGTGCCGATGCAGCTGGCCG
TGGAAGCCTTCCGTGGTTAAGGCCAACTGCCGAAATCGGGTACAGACGAA
TTTGGATTTAGTAACGGAGAAAGCGAGACAGTCATAATTATGAGAGAATG
CGGCAAGGAATGCGGCCTAGTGGTTGGGGTGGTGACCTACACCTAACATC
CATGTCACAATCTGTGTTCACCTGTCCATGGTTATCACGCGCGTTGTATG
CTTTGTGTGCAGCTTCGCGTGTGGCCTCGCTCGGGGTGGCGTCGATTGGT
GCTCAACCACGGCGCGGGCGGTTAACCTAGATCTTCTCAGGTGGGCGACG
AAGCAGGGATATCCCTGGACTAGGTCACTGTCCGCCGCAGCAGCCGAGGG
CGGCAATATCGCGGCCCTCGAGTGGCTGAAAGAGAATGGTTGCTTGCCAA
CGGAGGCGACCTGCGCTGGCGCGGCATTAGGCGGGCATCTGGACGCGTTG
AAGTGGTGCCGGGCCAACGAGTGTCCGTGGGATCGAGCGACGGTGGAATG
CGGCGCCAAGGGCGGACACCTAGACATCTGAGGTTTGCAAAGGAGAACGG
TTGTGGCGGATGGGACGCCCGCGCTTGTTCGGCAGCTGCCGGGGGGGGGC
AGCTCGCGGTGCTCCGTTGGCTGCGTCAGGAGGGGTGCCAGTGGGACTCG
AACACGCCTTCGAGTGCTTCGAAAGGGGGCCACCTCGAGGCCCTGCAGTA
CGCGATTCAGAACGAATGCCGGGCGTCCGACGCGGTGTGCTCGAATGCCG
CCAGGTACAGGCACCTCCACCTTCTGCGGTGGGCTTTTGCTAGCGGCTGC
AGTGCAGACCTGACGAGGGTCTATACGTTGGGAGCCCAGGGGGGGAGCAC
GTGGATGTTATCAAGTGGGGCAGGGAGAACGGCGGCGGTTGCAACAGCGA
AGCAGGCTACTGGGCCGCCGTTGGGGGTCACGTACATGTGAAAGAGTATT
TTAACACGATTGGGCTTTCATGGGGAGAGGAGTCATCGCTGTTTCCGGCG
GTAAGAAGGGCTCAGACGGAGCTTGGTTGCACGGCTGCCAAGAGAAGCCG
ACTGGAGTGCGTAGCCTCGTGGATTCTGGCGAACAGAGCACCCGCCCGTG
GCGATGATGTCTCTGTGGAAGAACGCAGAGCGGCCTGTCTTCTCCTGAAG
AATCCGAGCGGAGAAGTCGGAGATGGAGAAGACAACTGA
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Coding sequence (CDS) from alignment at Scaffold_339:177227..179015+

>EsuBft1085_12a-0001 ID=EsuBft1085_12a-0001|Name=EsuBft1085_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=990bp|location=Sequence derived from alignment at Scaffold_339:177227..179015+ (Ectocarpus subulatus male Bft15b)
ATGTCGCCTTCTAACGTTGGCACGATCGGAGGGAGCGCGAAACGCGTTCG
GACGGAGAATGTCGCCGTGACCAATATGGATATCGTCCGCGGCTTGGCGC
GATTCGTCGCCGACAAGCAGTTCCTATTCTTTGCGCCAGTCTCGCGTAGC
TGGAGAGCGCGTGGGGGGAGCGGGCGACGCTTCGCGTGTGGCCTCGCTCG
GGGTGGCGTCGATTGGTGCTCAACCACGGCGCGGGCGGTTAACCTAGATC
TTCTCAGGTGGGCGACGAAGCAGGGATATCCCTGGACTAGGTCACTGTCC
GCCGCAGCAGCCGAGGGCGGCAATATCGCGGCCCTCGAGTGGCTGAAAGA
GAATGGTTGCTTGCCAACGGAGGCGACCTGCGCTGGCGCGGCATTAGGCG
GGCATCTGGACGCGTTGAAGTGGTGCCGGGCCAACGAGTCTGCCGGGGGG
GGGCAGCTCGCGGTGCTCCGTTGGCTGCGTCAGGAGGGGTGCCAGTGGGA
CTCGAACACGCCTTCGAGTGCTTCGAAAGGGGGCCACCTCGAGGCCCTGC
AGTACGCGATTCAGAACGAATGCCGGGCGTCCGACGCGGTGTGCTCGAAT
GCCGCCAGACCTGACGAGGGTCTATACGTTGGGAGCCCAGGGGGGGAGCA
CGTGGATGTTATCAAGTGGGGCAGGGAGAACGGCGGCGGTTGCAACAGCG
AAGCAGGCTACTGGGCCGCCGTTGGGGGTCACGTACATGTGAAAGAGTAT
TTTAACACGATTGGGCTTTCATGGGGAGAGGAGTCATCGCTGTTTCCGGC
GGTAAGAAGGGCTCAGACGGAGCTTGGTTGCACGGCTGCCAAGAGAAGCC
GACTGGAGTGCGTAGCCTCGTGGATTCTGGCGAACAGAGCACCCGCCCGT
GGCGATGATGTCTCTGTGGAAGAACGCAGAGCGGCCTGTCTTCTCCTGAA
GAATCCGAGCGGAGAAGTCGGAGATGGAGAAGACAACTGA
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