EsuBft1084_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1084_3a-0001
Unique NameEsuBft1084_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:688496..691724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog653948.CCA24996
ProteomeIdEsuBft1084_3
Protein domainsPTHR13621
Protein domainsCoil
Protein domainsIPR018800
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length205
Hectar predicted targeting categoryother localisation
Evalue9.41e-12
EggNOG OGs2BSAN@1|root,2S1Y7@2759|Eukaryota
Ec32 ortholog descriptionProline-rich protein PRCC
Ec32 orthologEc-20_004340.1
Date last modified2016-06-13
Date creation2016-06-13
DescriptionMitotic checkpoint regulator, MAD2B-interacting
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1084_3aEsuBft1084_3aEctocarpus subulatus male Bft15bgeneScaffold_630 688496..691724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1084_3a-0001EsuBft1084_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 688496..691126 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1084_3a-0001-exonagat-exon-35836Ectocarpus subulatus male Bft15bexonScaffold_630 688496..689503 +
EsuBft1084_3a-0001-exonagat-exon-35834Ectocarpus subulatus male Bft15bexonScaffold_630 689694..689861 +
EsuBft1084_3a-0001-exonEsuBft1084_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 690020..690154 +
EsuBft1084_3a-0001-exonagat-exon-35835Ectocarpus subulatus male Bft15bexonScaffold_630 690977..691724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1084_3a-0001-cdsEsuBft1084_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 688496..689503 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1084_3a-0001-exonagat-three_prime_utr-781Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 691127..691724 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1084_3a-0001 ID=EsuBft1084_3a-0001|Name=EsuBft1084_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2059bp|location=Sequence derived from alignment at Scaffold_630:688496..691724+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCTGGTCGGCGGCTATGCGTCCTCCGATGATGATGAACAGCTACC
GCCGCCGCCGCAGCAGCAGCCGCAGCAGCAGTCCGAAGGAGCCTTGAAGC
AGAATGGAAAGGCACGAGCGGTGGGAAGCGTGGTGACACCGGCAACAATC
AAGGCTACCGGCAACAAGGGAAAGAAGCGGAGGAGTGGCAAGAAGACGAC
GGGCTTGAAGAAGAACAACAAGAAGACCGTCAACGCTCTCGTGCTCTCTC
CCGAGATTCAGGCCGCGCTCGCTCGCGGAGACTCTCTAGGAGACAGCGAC
TCCGACGACGAGGATGGTGTCGCCAAGAAGCCCAAGATCGTCCGTCGACC
CGCTGGAAGCGACCCGAGCGACCTGCTGTCGCTGCTGCCTCAGCCGTCCA
CAGCCGCGAGCGCAGATGACATTCTGCTCAAGAGTCAAAAGAAGAGAGAC
GACGCGAGGACGGCCAAGTCAGCAGCCGCAGCCGCAGCAGCGGCAACAGC
AACACGACCAGCAACTGCTGGCGGCGGCGGGGGCATCGAAGGCCAGGCAG
AAGAAGACCAAGAGTCCGAGTCGGACGAAGATGGGGACGACCTTCTCGCT
GGGATGCACGCCAAGTCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCAGCGGCATCTGAAACCGGCTCTAGAAGCGGCCCTCTCTTCACCCTCC
CCTCTCGAGCAAGACCGCCCCCCGCTGCCGCGCCCGCCGACCCACCGGAA
CAGGGCATGGAGGAGGTGGTCAGGCCTAGCGGGGAAGGCACAGCTGCGGT
ACCTGGGTATCTCGAGACAGGGACACCGGGCCTAAGTGCGGGGCAACAGC
AGTGGGGAGGGTTTGATCGAGGGCATGCCGCGGCATCTCCCCAGGGAGGT
TATGCTGGGGCCGGCGGCTACGGTGGAGCGGCGGGGGCAGTGGGAGGGGT
TGCGGCGGCAGGAACAAGCGCTACAGATTACGCCGTGTATGGGGCTGCTT
CACAACAGCAGCAACAGCAGCAGCAAACGCCATATTATTACCCTTATGCA
GCTGGGGCGGCTGCAGGTAGCTACCAGCCCGAGTTCGGCGGTGGGGGAGC
CAAGGCAACGAGGCGAAAAGGAAGGGATATGGAGCGCGCATTAGCGAGGG
GAGATTTGGGAGCCTTGGGGAGCGAGATGCCGGTGATGGACCTACAACAA
GGCACCAACGAATACAACCCCCTGCGAACGAAGCCGACCACGGCTGCCAT
GAACCAGGAGCAGAAGCACATCGAGAGCAGTGTTTACGACCCGAGCACCG
GGAAGACAGTGAAAACTCTGGAGCCGACGTCGATGCAGAAACGCAAGCAC
CAGATCAACCAGCTGGCGGCGCAGGCGGCCAGCATGGAGCGCGATTTGAT
GGAGCGTAGCGGCGCGTCGAGATTAACTAAGGCTCAGACCCACGCCAAGT
ACGGCTGGTAGTCCCTACTGAGGTGTGTTGCGCGTGATCGTGAACAGCCT
TGCCCGACTTGTCTGGTACGTGTGGGCGGTGACCTACTGGGCCAACAACC
AAACGATGCAACTGCCTGATGAATTTTGGATTTTGCTCGTGTGGATTGAG
TCTTTGGGGGGACAGGCCCTACAGTCGAAACATGATCGATGAAGAAGCAA
CGCACCACGTTACGGAGATATTCGAAGTAAGTGATTTGTTGCGTGTTTAG
GTCGGTGCTCTCCTTGGCCTCCGACCCGCCTTCTCTGTGCTTACCAGCCG
GACGGCCCCAGCAGCTCTGTCAGGACTAGCCACTTCTAAATACGGTATTT
ATGTCCGTGGTGCCTTGCTTTGTGACAGTAGTACCCCACAAGTGTCCTTC
AAGTCTCAGGTAGATTGCAACGTGTGCAGGCCAAGGGAAGCGAGCTTGAC
TCATCTGCGGTGTAGAATCCGTGTTCTTATCGTAGACCCGGGCCGCGGCA
GGGTACGTGTATCACATGAGCTGCGCGTTCAAAACATCCCACCTAGCCTC
TCTGGGGGTGAGTATTATTTCGTAACGCATTCCACATCCAAGTACAGTCG
TCCCCGCTT
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protein sequence of EsuBft1084_3a-0001

>EsuBft1084_3 ID=EsuBft1084_3|Name=EsuBft1084_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=486bp
MNLVGGYASSDDDEQLPPPPQQQPQQQSEGALKQNGKARAVGSVVTPATI
KATGNKGKKRRSGKKTTGLKKNNKKTVNALVLSPEIQAALARGDSLGDSD
SDDEDGVAKKPKIVRRPAGSDPSDLLSLLPQPSTAASADDILLKSQKKRD
DARTAKSAAAAAAAATATRPATAGGGGGIEGQAEEDQESESDEDGDDLLA
GMHAKSAAAAAAAAAAAAAASETGSRSGPLFTLPSRARPPPAAAPADPPE
QGMEEVVRPSGEGTAAVPGYLETGTPGLSAGQQQWGGFDRGHAAASPQGG
YAGAGGYGGAAGAVGGVAAAGTSATDYAVYGAASQQQQQQQQTPYYYPYA
AGAAAGSYQPEFGGGGAKATRRKGRDMERALARGDLGALGSEMPVMDLQQ
GTNEYNPLRTKPTTAAMNQEQKHIESSVYDPSTGKTVKTLEPTSMQKRKH
QINQLAAQAASMERDLMERSGASRLTKAQTHAKYGW
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mRNA from alignment at Scaffold_630:688496..691724+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1084_3a-0001 ID=EsuBft1084_3a-0001|Name=EsuBft1084_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3229bp|location=Sequence derived from alignment at Scaffold_630:688496..691724+ (Ectocarpus subulatus male Bft15b)
ATGAACCTGGTCGGCGGCTATGCGTCCTCCGATGATGATGAACAGCTACC
GCCGCCGCCGCAGCAGCAGCCGCAGCAGCAGTCCGAAGGAGCCTTGAAGC
AGAATGGAAAGGCACGAGCGGTGGGAAGCGTGGTGACACCGGCAACAATC
AAGGCTACCGGCAACAAGGGAAAGAAGCGGAGGAGTGGCAAGAAGACGAC
GGGCTTGAAGAAGAACAACAAGAAGACCGTCAACGCTCTCGTGCTCTCTC
CCGAGATTCAGGCCGCGCTCGCTCGCGGAGACTCTCTAGGAGACAGCGAC
TCCGACGACGAGGATGGTGTCGCCAAGAAGCCCAAGATCGTCCGTCGACC
CGCTGGAAGCGACCCGAGCGACCTGCTGTCGCTGCTGCCTCAGCCGTCCA
CAGCCGCGAGCGCAGATGACATTCTGCTCAAGAGTCAAAAGAAGAGAGAC
GACGCGAGGACGGCCAAGTCAGCAGCCGCAGCCGCAGCAGCGGCAACAGC
AACACGACCAGCAACTGCTGGCGGCGGCGGGGGCATCGAAGGCCAGGCAG
AAGAAGACCAAGAGTCCGAGTCGGACGAAGATGGGGACGACCTTCTCGCT
GGGATGCACGCCAAGTCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCAGCGGCATCTGAAACCGGCTCTAGAAGCGGCCCTCTCTTCACCCTCC
CCTCTCGAGCAAGACCGCCCCCCGCTGCCGCGCCCGCCGACCCACCGGAA
CAGGGCATGGAGGAGGTGGTCAGGCCTAGCGGGGAAGGCACAGCTGCGGT
ACCTGGGTATCTCGAGACAGGGACACCGGGCCTAAGTGCGGGGCAACAGC
AGTGGGGAGGGTTTGATCGAGGGCATGCCGCGGCATCTCCCCAGGGAGGT
TATGCTGGGGCCGGCGGCTACGGTGGAGCGGCGGGGGCAGTGGGAGGGGT
TGCGGCGGCAGGAACAAGCGCTACAGATTACGCCGTGTATGGGGCTGCTT
CACAACAGGTAGGGTATGGTTGCCTTGCATTGGGCTGTCTTTAATACGTC
GGTGGTATTTCTGCGGCAACGTGTTGCTCTTCAGAGACGAGGTTTTCCTG
TATGCACACCTCGGTGTTGTTTATGCCATTGACAACCTGCTGTTCGCGCC
ACCCTCTTCTGTCGACGAATGCGACAGCAGCAGCAGCAGCAGCAGCAGCA
GCAACAGCAGCAGCAAACGCCATATTATTACCCTTATGCAGCTGGGGCGG
CTGCAGGTAGCTACCAGCCCGAGTTCGGCGGTGGGGGAGCCAAGGCAACG
AGGCGAAAAGGAAGGGATATGGAGCGCGCATTAGCGAGGGGAGATTTGGG
AGCCTTGGGGAGCGAGGTGAGAACTGGCGAGGAAATTTCTCGGGTCGCCC
ATATTGATAAGCACTCTTACGCTGCACACGGCTTGCGTCGCTAGAAGGCT
CCCGTGATCGGTGTATCTTCACGAGGCTGCCCCCTATATCACCCTTTCCC
GCTCCGCTTGAATGGGTGCCCCAGATGCCGGTGATGGACCTACAACAAGG
CACCAACGAATACAACCCCCTGCGAACGAAGCCGACCACGGCTGCCATGA
ACCAGGAGCAGAAGCACATCGAGAGCAGTGTTTACGACCCGAGCACCGGG
AAGACAGTGGTGAGTCTACCGTGTGTCGCGGAAATGCGTTCGCACTGCCA
TTATTGTTGTGCTGAAACGTGTATGCCTCACCTGCTGTTTTTTGTATCCG
AGGTAAAGATGTACTAGAGAACACACGGCGAGTGGCGTAAGCGCCCTCCC
CCCCAGCGGTTTGACGAGGCGTCTTTTCGAGCCAACGACGACTGCTGCAG
TGTACACATGTGTAACTTCCGTACCTTGTGAGCTCACCCGTCAGGTAGCT
ACTGCTGTGGGTGAGATGTACCCAACATGAAACGGGCATGAGTGTGCAAT
GCACAAAACGGAAGTATCTTGCACAGCAGTACCAACCCTCGAAACCTTGC
TCCTAGGATAATAACGCGCCAAGTGGCGCGTTCGAACGACGGTTTATGTC
TGAACGTGATAAAAACCATGGCGTACTTCACGAATTTTGTTTTTCTAGCG
GGGGGGTGGGGGGCTTGTTTGGATACCCCCNNNNNNGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGCAGGCAGTCACACA
GATCCAACACGTTGCGTGTTGCACCATTCCCAATTCCGACGCGGCACATC
CGACCCCGGCCAAGGTCTTACGTCGCTCTCAAAAAGTATTTGGTGTTGGA
TGTCAAGAGACTTGGAATCTAAATGAATACGGAGCACCGCAAGTCGACAT
CGTCCTCTAGCTTTCATCTTTCGACTGACTTATTATGTATCGCTGCGTTT
TATCTCCGACATCTGCGACTGGTGAACCCAGAAAACTCTGGAGCCGACGT
CGATGCAGAAACGCAAGCACCAGATCAACCAGCTGGCGGCGCAGGCGGCC
AGCATGGAGCGCGATTTGATGGAGCGTAGCGGCGCGTCGAGATTAACTAA
GGCTCAGACCCACGCCAAGTACGGCTGGTAGTCCCTACTGAGGTGTGTTG
CGCGTGATCGTGAACAGCCTTGCCCGACTTGTCTGGTACGTGTGGGCGGT
GACCTACTGGGCCAACAACCAAACGATGCAACTGCCTGATGAATTTTGGA
TTTTGCTCGTGTGGATTGAGTCTTTGGGGGGACAGGCCCTACAGTCGAAA
CATGATCGATGAAGAAGCAACGCACCACGTTACGGAGATATTCGAAGTAA
GTGATTTGTTGCGTGTTTAGGTCGGTGCTCTCCTTGGCCTCCGACCCGCC
TTCTCTGTGCTTACCAGCCGGACGGCCCCAGCAGCTCTGTCAGGACTAGC
CACTTCTAAATACGGTATTTATGTCCGTGGTGCCTTGCTTTGTGACAGTA
GTACCCCACAAGTGTCCTTCAAGTCTCAGGTAGATTGCAACGTGTGCAGG
CCAAGGGAAGCGAGCTTGACTCATCTGCGGTGTAGAATCCGTGTTCTTAT
CGTAGACCCGGGCCGCGGCAGGGTACGTGTATCACATGAGCTGCGCGTTC
AAAACATCCCACCTAGCCTCTCTGGGGGTGAGTATTATTTCGTAACGCAT
TCCACATCCAAGTACAGTCGTCCCCGCTT
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Coding sequence (CDS) from alignment at Scaffold_630:688496..691724+

>EsuBft1084_3a-0001 ID=EsuBft1084_3a-0001|Name=EsuBft1084_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1461bp|location=Sequence derived from alignment at Scaffold_630:688496..691724+ (Ectocarpus subulatus male Bft15b)
ATGAACCTGGTCGGCGGCTATGCGTCCTCCGATGATGATGAACAGCTACC
GCCGCCGCCGCAGCAGCAGCCGCAGCAGCAGTCCGAAGGAGCCTTGAAGC
AGAATGGAAAGGCACGAGCGGTGGGAAGCGTGGTGACACCGGCAACAATC
AAGGCTACCGGCAACAAGGGAAAGAAGCGGAGGAGTGGCAAGAAGACGAC
GGGCTTGAAGAAGAACAACAAGAAGACCGTCAACGCTCTCGTGCTCTCTC
CCGAGATTCAGGCCGCGCTCGCTCGCGGAGACTCTCTAGGAGACAGCGAC
TCCGACGACGAGGATGGTGTCGCCAAGAAGCCCAAGATCGTCCGTCGACC
CGCTGGAAGCGACCCGAGCGACCTGCTGTCGCTGCTGCCTCAGCCGTCCA
CAGCCGCGAGCGCAGATGACATTCTGCTCAAGAGTCAAAAGAAGAGAGAC
GACGCGAGGACGGCCAAGTCAGCAGCCGCAGCCGCAGCAGCGGCAACAGC
AACACGACCAGCAACTGCTGGCGGCGGCGGGGGCATCGAAGGCCAGGCAG
AAGAAGACCAAGAGTCCGAGTCGGACGAAGATGGGGACGACCTTCTCGCT
GGGATGCACGCCAAGTCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCAGCGGCATCTGAAACCGGCTCTAGAAGCGGCCCTCTCTTCACCCTCC
CCTCTCGAGCAAGACCGCCCCCCGCTGCCGCGCCCGCCGACCCACCGGAA
CAGGGCATGGAGGAGGTGGTCAGGCCTAGCGGGGAAGGCACAGCTGCGGT
ACCTGGGTATCTCGAGACAGGGACACCGGGCCTAAGTGCGGGGCAACAGC
AGTGGGGAGGGTTTGATCGAGGGCATGCCGCGGCATCTCCCCAGGGAGGT
TATGCTGGGGCCGGCGGCTACGGTGGAGCGGCGGGGGCAGTGGGAGGGGT
TGCGGCGGCAGGAACAAGCGCTACAGATTACGCCGTGTATGGGGCTGCTT
CACAACAGCAGCAACAGCAGCAGCAAACGCCATATTATTACCCTTATGCA
GCTGGGGCGGCTGCAGGTAGCTACCAGCCCGAGTTCGGCGGTGGGGGAGC
CAAGGCAACGAGGCGAAAAGGAAGGGATATGGAGCGCGCATTAGCGAGGG
GAGATTTGGGAGCCTTGGGGAGCGAGATGCCGGTGATGGACCTACAACAA
GGCACCAACGAATACAACCCCCTGCGAACGAAGCCGACCACGGCTGCCAT
GAACCAGGAGCAGAAGCACATCGAGAGCAGTGTTTACGACCCGAGCACCG
GGAAGACAGTGAAAACTCTGGAGCCGACGTCGATGCAGAAACGCAAGCAC
CAGATCAACCAGCTGGCGGCGCAGGCGGCCAGCATGGAGCGCGATTTGAT
GGAGCGTAGCGGCGCGTCGAGATTAACTAAGGCTCAGACCCACGCCAAGT
ACGGCTGGTAG
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