EsuBft1083_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1083_7a-0001
Unique NameEsuBft1083_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_246contigScaffold_246:588660..589166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LGR8
ProteomeIdEsuBft1083_7
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSignalP-TM
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length18
Hectar predicted targeting categorysignal peptide
Evalue3.01e-28
EggNOG OGs2D0IR@1|root,2SECD@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionZinc finger, C3HC4 type (RING finger)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1083_7aEsuBft1083_7aEctocarpus subulatus male Bft15bgeneScaffold_246 588660..589166 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1083_7a-0001-exonagat-exon-46256Ectocarpus subulatus male Bft15bexonScaffold_246 588660..588836 +
EsuBft1083_7a-0001-exonEsuBft1083_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_246 589161..589166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1083_7a-0001-cdsEsuBft1083_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_246 588660..588836 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1083_7a-0001EsuBft1083_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_246 588660..589166 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1083_7a-0001 ID=EsuBft1083_7a-0001|Name=EsuBft1083_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=183bp|location=Sequence derived from alignment at Scaffold_246:588660..589166+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATACCTTTGCTAGCTGCCATCCTCTTGGCCGGAGCCGCGGGCGCTGG
CCCGGTCCTCGTGAGCGACGCCTGCGGGAGCGACACAACGACGAACGATG
ACCTTGGGCGGGGACGGTGTGCCGTGGAGACGGTCTGCCGAAATATGAAG
GCGAAGGAGAGGCCGGCGGAGCTAAAGGCGTGA
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protein sequence of EsuBft1083_7a-0001

>EsuBft1083_7 ID=EsuBft1083_7|Name=EsuBft1083_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=60bp
MIPLLAAILLAGAAGAGPVLVSDACGSDTTTNDDLGRGRCAVETVCRNMK
AKERPAELKA
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mRNA from alignment at Scaffold_246:588660..589166+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1083_7a-0001 ID=EsuBft1083_7a-0001|Name=EsuBft1083_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=507bp|location=Sequence derived from alignment at Scaffold_246:588660..589166+ (Ectocarpus subulatus male Bft15b)
ATGATACCTTTGCTAGCTGCCATCCTCTTGGCCGGAGCCGCGGGCGCTGG
CCCGGTCCTCGTGAGCGACGCCTGCGGGAGCGACACAACGACGAACGATG
ACCTTGGGCGGGGACGGTGTGCCGTGGAGACGGTCTGCCGAAATATGAAG
GCGAAGGAGAGGCCGGCGGAGCTAAAGGTGCGTCGAGCGATAGATGATGA
TTCGAGTTCGAGCGATTGCAGAGCTTGAGTAGGCTTGAGAAGCAAAAAGC
AGCTTGCTCTGTGTGTCTGGCTCGTGTCCCCATAATCATCCGATGTTTTT
TCGACGCCTCCATCGAACCTTGTTTGGCTTTCAAAAAGCGTGCCGAAACT
ATGCATAGCGTGTAGCTCACCTACCATTTGCACGTTTTGTAAGACCCACG
TGTACGGTGTACGCACGAGGGTTGTACTGTGATGTTTGTAAACATCGGGG
CGTTGCGTTCCTTGTTCACAAAAGAGCACGGTCCTGCGTCACAGGTTGCA
GGCGTGA
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Coding sequence (CDS) from alignment at Scaffold_246:588660..589166+

>EsuBft1083_7a-0001 ID=EsuBft1083_7a-0001|Name=EsuBft1083_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=183bp|location=Sequence derived from alignment at Scaffold_246:588660..589166+ (Ectocarpus subulatus male Bft15b)
ATGATACCTTTGCTAGCTGCCATCCTCTTGGCCGGAGCCGCGGGCGCTGG
CCCGGTCCTCGTGAGCGACGCCTGCGGGAGCGACACAACGACGAACGATG
ACCTTGGGCGGGGACGGTGTGCCGTGGAGACGGTCTGCCGAAATATGAAG
GCGAAGGAGAGGCCGGCGGAGCTAAAGGCGTGA
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