EsuBft1083_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1083_4a-0001
Unique Name	EsuBft1083_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_246	contig	Scaffold_246:556372..557645 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1083_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	127
Hectar predicted targeting category	mitochondrion
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1083_4a	EsuBft1083_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_246 556372..557645 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1083_4a-0001-exon	EsuBft1083_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 556372..557645 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1083_4a-0001-exon	agat-three_prime_utr-777	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_246 556372..557441 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1083_4a-0001-cds	EsuBft1083_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_246 557442..557645 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1083_4a-0001	EsuBft1083_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_246 557442..557645 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_246:556372..557645-
coding sequence from alignment at Scaffold_246:556372..557645-

spliced messenger RNA

>EsuBft1083_4a-0001 ID=EsuBft1083_4a-0001|Name=EsuBft1083_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1274bp|location=Sequence derived from alignment at Scaffold_246:556372..557645- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCTGCTGCGGCCGAACCTCCTGTGGTGTGCACGCACGGCAAGCTT
AACACGAGGACGCGCCCTATACCTAACCGATCGACACGAAACAATGACGG
CCCGAGTTGCTCGATGCCGCAACCTTTTTTTGAGTAGCTTCTCCGATGGC
CCGGATTCGAGCTTGATTGCAGCCCTGGCAGTGCCAAGCTTGTGGGCGTC
CTGATCCACCACCCTCCGTTATGTTATCGTCCACGACGTCCACACTGTAC
CACCTCTTCTGGTCCTTCACAGGGTACCCTCTCTTGCACACGCTACATGT
TCGGAGCTCCGGCTTTGCTTCCCTCTCGAGAAGAAAACCGTAGAAACAAT
CTCGGCGTTGGCAAATGCAGTCGTTGCTGGGACAAAATCCTCGCACGAGA
GGTGGAGGCAGCTCCCCCTCTCCTTGGTACTCGGCCAAAAACAACCGTGT
CGCTCGTTCAAGCCGTGGCCCTCTGAATTGCGTGAAGCCAGCTAAGCCCT
CCGACCTATGGCATGCGGAGCATAGCTTGTCACTGACGGCGTGCACTACG
CCTGAGGGGCACATGCTGCATTCGAGACCCGGGTTGTTTGTGAACCAACC
GCACTCCGCACGCCTACAAGGTTTCTTGCGTGTTTTTTTCTCGGCTCCGA
TCTGAGTATTCCTAACTCCAGGATCACACTGTCTCCGCGCTGCACTCCGC
TTGACGGAGCGAGAGCCAGCTGTTCTAAGCTTTCCAACGCAACTTCGACG
CCGGAATTCAACCGTCCGCTTGCCTCCAGACTCCAACTTCTCACGTTCAG
CTTCGGCAATATCTCGCTCTCTGCGGACCTTAGCATGTTGCCTCGCCTCC
TTTTGCTGCTCACTGTACTCCTCGTCTGCCATCCTCCCCTCAAAGACGGC
TTGCCGCCTCTGCGCTAGCGTCCGTTTCTTTCTGCGTTTCCTACCGGATC
CTGTACGGCTTCCCGGATCTCGGCCACGCGCGCCGGATCCCGCCACTCGC
TTAGTTGAGACGCCAGACGTACTTGCGGGTGTAGCCTCTGGGGAAGCGGT
GCCCAGGCCGCCTCCCCGTTGACAAGTAGCCGTAGACCCCCCCCAGCTGC
TACCATTAACAGGATTCGACGGAGTTCGTGGGGGGCGACTACGTGGGTGG
CGCGTCCTCCTTGGTGTCGCTTTTCCTTCAGCGGGGCTGCATGTCCGTCC
ACGTCTTGGTTCAGGGCGAGGAGACGCAGGTGGTGTCACGGTCTGCTCGG
TATGGCTCTTGTCGCCGCTCCCCC

protein sequence of EsuBft1083_4a-0001

>EsuBft1083_4 ID=EsuBft1083_4|Name=EsuBft1083_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=67bp
MPLLRPNLLWCARTASLTRGRALYLTDRHETMTARVARCRNLFLSSFSDG
PDSSLIAALAVPSLWAS

mRNA from alignment at Scaffold_246:556372..557645-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1083_4a-0001 ID=EsuBft1083_4a-0001|Name=EsuBft1083_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1274bp|location=Sequence derived from alignment at Scaffold_246:556372..557645- (Ectocarpus subulatus male Bft15b)
ATGCCCCTGCTGCGGCCGAACCTCCTGTGGTGTGCACGCACGGCAAGCTT
AACACGAGGACGCGCCCTATACCTAACCGATCGACACGAAACAATGACGG
CCCGAGTTGCTCGATGCCGCAACCTTTTTTTGAGTAGCTTCTCCGATGGC
CCGGATTCGAGCTTGATTGCAGCCCTGGCAGTGCCAAGCTTGTGGGCGTC
CTGATCCACCACCCTCCGTTATGTTATCGTCCACGACGTCCACACTGTAC
CACCTCTTCTGGTCCTTCACAGGGTACCCTCTCTTGCACACGCTACATGT
TCGGAGCTCCGGCTTTGCTTCCCTCTCGAGAAGAAAACCGTAGAAACAAT
CTCGGCGTTGGCAAATGCAGTCGTTGCTGGGACAAAATCCTCGCACGAGA
GGTGGAGGCAGCTCCCCCTCTCCTTGGTACTCGGCCAAAAACAACCGTGT
CGCTCGTTCAAGCCGTGGCCCTCTGAATTGCGTGAAGCCAGCTAAGCCCT
CCGACCTATGGCATGCGGAGCATAGCTTGTCACTGACGGCGTGCACTACG
CCTGAGGGGCACATGCTGCATTCGAGACCCGGGTTGTTTGTGAACCAACC
GCACTCCGCACGCCTACAAGGTTTCTTGCGTGTTTTTTTCTCGGCTCCGA
TCTGAGTATTCCTAACTCCAGGATCACACTGTCTCCGCGCTGCACTCCGC
TTGACGGAGCGAGAGCCAGCTGTTCTAAGCTTTCCAACGCAACTTCGACG
CCGGAATTCAACCGTCCGCTTGCCTCCAGACTCCAACTTCTCACGTTCAG
CTTCGGCAATATCTCGCTCTCTGCGGACCTTAGCATGTTGCCTCGCCTCC
TTTTGCTGCTCACTGTACTCCTCGTCTGCCATCCTCCCCTCAAAGACGGC
TTGCCGCCTCTGCGCTAGCGTCCGTTTCTTTCTGCGTTTCCTACCGGATC
CTGTACGGCTTCCCGGATCTCGGCCACGCGCGCCGGATCCCGCCACTCGC
TTAGTTGAGACGCCAGACGTACTTGCGGGTGTAGCCTCTGGGGAAGCGGT
GCCCAGGCCGCCTCCCCGTTGACAAGTAGCCGTAGACCCCCCCCAGCTGC
TACCATTAACAGGATTCGACGGAGTTCGTGGGGGGCGACTACGTGGGTGG
CGCGTCCTCCTTGGTGTCGCTTTTCCTTCAGCGGGGCTGCATGTCCGTCC
ACGTCTTGGTTCAGGGCGAGGAGACGCAGGTGGTGTCACGGTCTGCTCGG
TATGGCTCTTGTCGCCGCTCCCCC

Coding sequence (CDS) from alignment at Scaffold_246:556372..557645-

>EsuBft1083_4a-0001 ID=EsuBft1083_4a-0001|Name=EsuBft1083_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=204bp|location=Sequence derived from alignment at Scaffold_246:556372..557645- (Ectocarpus subulatus male Bft15b)
ATGCCCCTGCTGCGGCCGAACCTCCTGTGGTGTGCACGCACGGCAAGCTT
AACACGAGGACGCGCCCTATACCTAACCGATCGACACGAAACAATGACGG
CCCGAGTTGCTCGATGCCGCAACCTTTTTTTGAGTAGCTTCTCCGATGGC
CCGGATTCGAGCTTGATTGCAGCCCTGGCAGTGCCAAGCTTGTGGGCGTC
CTGA