EsuBft1083_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1083_2a-0001
Unique Name	EsuBft1083_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_246	contig	Scaffold_246:531291..532210 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7668.SPU_008007-tr
ProteomeId	EsuBft1083_2
Protein domains	PTHR24559
Protein domains	IPR001584
Protein domains	IPR012337
Owner	apollo_admin@sb-roscoff.fr
Note	transposon ty3-i gag-pol polyprotein os:saccharomyces cerevisiae (strain atcc 204508 s288c) gn:ty3b-i pe:3 sv:2 [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	920
Evalue	5.27e-25
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38F42@33154\|Opisthokonta,3BA5H@33208\|Metazoa,3CWAK@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	K02A2.6-like
COG category	E

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1083_2a	EsuBft1083_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_246 531291..532210 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1083_2a-0001-exon	EsuBft1083_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 531291..532210 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1083_2a-0001-cds	EsuBft1083_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_246 531291..531833 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1083_2a-0001-exon	agat-three_prime_utr-775	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_246 531834..532210 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1083_2a-0001	EsuBft1083_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_246 531291..531833 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_246:531291..532210+
coding sequence from alignment at Scaffold_246:531291..532210+

spliced messenger RNA

>EsuBft1083_2a-0001 ID=EsuBft1083_2a-0001|Name=EsuBft1083_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=920bp|location=Sequence derived from alignment at Scaffold_246:531291..532210+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCAGTCACAGCGGCGGAATTTACGGCGAGAGGGACGGCTCACAT
CTTCGTCAACCGATACATGACCAGGTGGGGATGTCCGACTCCGTTATTTT
CGGACAACGGACTGTATTTCTGCTCGAAGCTCTCCATGGCGATCTACGAG
GTGATGAAGATCAAGAAGGTCATCACCAGCTCCTACCACCCACAGACCAA
CGGCGGCGCGGAACGCGTCAACCACACGATGGCCCAGATGCTTGCGGTGG
TCGTCAACGAACAGCAAAACGATTGGGACATACATCTCCCGCGCGTTGAG
TTTGCCTACAACAATTCCGTGAACCAGTCTACTGGATTAGCGCCAAACGA
GATCCACATTGGACGCATGCCGCGACTCCCGCTTTCGGTCTTCGATCATC
CCACGGAAGGTGGTCATCAAAGCTTGGCCCGCGATCAACTCCAGCATTGC
AACCTGGCTGTCGATCGCCAGCGCCGGGCCTACGGACTTGTCCGTGAGTA
CAACGCCCTGAAGATTTCGCGAGTCGAACGCCGCAATTCATNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GCCATCCACAAGCTCCCTCAGTTTACCGTTGGCGGGTGGGCTTGGGTGTA
CAACACGGTTGCTACAATTCGACAGGGTGTGTAGAAGGACACGGATCAAC
AGGTGCCCAAGGCCAAACTCGCACTTTCCTGGACGGGGCCCTACAAAGTT
CTTGCGGTGGGTCCCACCTCTGCCGACGCCACTCCGGACGGCCGCCCGTT
GGCGCATAAACTCCTCTACCTGGACCTGCCTTCCGATCTTTCCGGCCCGG
CAGCTCGTTGTCGCGTGTCT

protein sequence of EsuBft1083_2a-0001

>EsuBft1083_2 ID=EsuBft1083_2|Name=EsuBft1083_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=181bp
MFAVTAAEFTARGTAHIFVNRYMTRWGCPTPLFSDNGLYFCSKLSMAIYE
VMKIKKVITSSYHPQTNGGAERVNHTMAQMLAVVVNEQQNDWDIHLPRVE
FAYNNSVNQSTGLAPNEIHIGRMPRLPLSVFDHPTEGGHQSLARDQLQHC
NLAVDRQRRAYGLVREYNALKISRVERRNSX

mRNA from alignment at Scaffold_246:531291..532210+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1083_2a-0001 ID=EsuBft1083_2a-0001|Name=EsuBft1083_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=920bp|location=Sequence derived from alignment at Scaffold_246:531291..532210+ (Ectocarpus subulatus male Bft15b)
ATGTTCGCAGTCACAGCGGCGGAATTTACGGCGAGAGGGACGGCTCACAT
CTTCGTCAACCGATACATGACCAGGTGGGGATGTCCGACTCCGTTATTTT
CGGACAACGGACTGTATTTCTGCTCGAAGCTCTCCATGGCGATCTACGAG
GTGATGAAGATCAAGAAGGTCATCACCAGCTCCTACCACCCACAGACCAA
CGGCGGCGCGGAACGCGTCAACCACACGATGGCCCAGATGCTTGCGGTGG
TCGTCAACGAACAGCAAAACGATTGGGACATACATCTCCCGCGCGTTGAG
TTTGCCTACAACAATTCCGTGAACCAGTCTACTGGATTAGCGCCAAACGA
GATCCACATTGGACGCATGCCGCGACTCCCGCTTTCGGTCTTCGATCATC
CCACGGAAGGTGGTCATCAAAGCTTGGCCCGCGATCAACTCCAGCATTGC
AACCTGGCTGTCGATCGCCAGCGCCGGGCCTACGGACTTGTCCGTGAGTA
CAACGCCCTGAAGATTTCGCGAGTCGAACGCCGCAATTCATNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GCCATCCACAAGCTCCCTCAGTTTACCGTTGGCGGGTGGGCTTGGGTGTA
CAACACGGTTGCTACAATTCGACAGGGTGTGTAGAAGGACACGGATCAAC
AGGTGCCCAAGGCCAAACTCGCACTTTCCTGGACGGGGCCCTACAAAGTT
CTTGCGGTGGGTCCCACCTCTGCCGACGCCACTCCGGACGGCCGCCCGTT
GGCGCATAAACTCCTCTACCTGGACCTGCCTTCCGATCTTTCCGGCCCGG
CAGCTCGTTGTCGCGTGTCT

Coding sequence (CDS) from alignment at Scaffold_246:531291..532210+

>EsuBft1083_2a-0001 ID=EsuBft1083_2a-0001|Name=EsuBft1083_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=543bp|location=Sequence derived from alignment at Scaffold_246:531291..532210+ (Ectocarpus subulatus male Bft15b)
ATGTTCGCAGTCACAGCGGCGGAATTTACGGCGAGAGGGACGGCTCACAT
CTTCGTCAACCGATACATGACCAGGTGGGGATGTCCGACTCCGTTATTTT
CGGACAACGGACTGTATTTCTGCTCGAAGCTCTCCATGGCGATCTACGAG
GTGATGAAGATCAAGAAGGTCATCACCAGCTCCTACCACCCACAGACCAA
CGGCGGCGCGGAACGCGTCAACCACACGATGGCCCAGATGCTTGCGGTGG
TCGTCAACGAACAGCAAAACGATTGGGACATACATCTCCCGCGCGTTGAG
TTTGCCTACAACAATTCCGTGAACCAGTCTACTGGATTAGCGCCAAACGA
GATCCACATTGGACGCATGCCGCGACTCCCGCTTTCGGTCTTCGATCATC
CCACGGAAGGTGGTCATCAAAGCTTGGCCCGCGATCAACTCCAGCATTGC
AACCTGGCTGTCGATCGCCAGCGCCGGGCCTACGGACTTGTCCGTGAGTA
CAACGCCCTGAAGATTTCGCGAGTCGAACGCCGCAATTCATNN