EsuBft1080_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1080_4a-0001
Unique Name	EsuBft1080_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_412	contig	Scaffold_412:406303..409632 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1080_4
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	284
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1080_4a	EsuBft1080_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_412 406303..409632 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1080_4a-0001	EsuBft1080_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_412 406586..408867 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1080_4a-0001-exon	agat-exon-63079	Ectocarpus subulatus male Bft15b	exon	Scaffold_412 406303..406648 +
EsuBft1080_4a-0001-exon	EsuBft1080_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_412 406987..407763 +
EsuBft1080_4a-0001-exon	agat-exon-63078	Ectocarpus subulatus male Bft15b	exon	Scaffold_412 407911..409632 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1080_4a-0001-exon	agat-five_prime_utr-483	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_412 406303..406585 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1080_4a-0001-cds	EsuBft1080_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_412 406586..406648 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1080_4a-0001-exon	agat-three_prime_utr-758	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_412 408868..409632 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_412:406303..409632+
coding sequence from alignment at Scaffold_412:406303..409632+

spliced messenger RNA

>EsuBft1080_4a-0001 ID=EsuBft1080_4a-0001|Name=EsuBft1080_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2845bp|location=Sequence derived from alignment at Scaffold_412:406303..409632+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GACAAGCACGTCGTCAAGCTCAGCTGGAGGCTTGTCTCCGAACGTGGGGT
GCTGGTGACCGCGACTCGTTGACTCGAAGCACAAGAACAGGAGCTCACAA
ACCTACAGTTGCTACGCGAAGAACACCGAAGAGGCGGTCAGCGAAAAGGC
CAAGGAGCTGACTGACAAGGTCCTCAGAAACAAGCGCGAGCAGTCGCAAA
AGGCGCAGCAGCGGTCTGGTGGTGGCAGCAGCAGCGGAGGCGTTAGGAGG
ACAGCGGATAGCGCCGTCGCCGACCCTGTTATCATGGTTTTGCGGGGTGT
CGGGAGAACCCAATCCAGGGTGGTGACAATTCAGCCAGCTGAGCCGACGG
CGCCGGTCGACTGGCGCCAGCAGTCTACGGAAACGTTTCTCGCGTCCATG
GACAGCATGGGGTATGACAACGCGCTGAAACACTTGGAAAAAATCGGCTC
GACGTTTGCAAAGGACACCCGTAAACGCTTGCGAGGGTTGGAAGACAAGG
TCAGCACAGCAGTCTCGTTGGAGCGAGCAATCGAGCAGGCGCAAAAGCAA
CGTAGAACCAAGGAGAGAAGCCGCACGTTGCAATCGATCCTCACCGCTGC
GGCCTTTCCTGTGGATGGCGTAGACGAGGTTCCATCGTTGTCGGCAGCAC
GTAGGGCAAAGGCGCTAAGGGTTCGCCAGCACGCCTTCAACTCCGCGGTG
GAGCGTGCCAAGAATTTGCTGTCCGATCTTGATCCAACCGAGGCGATAAA
ATGCGGTGTCTACTGGTTTCGGCCCCGAGCTAAGCAAAGCAATGCCGCCA
GCGAAGAGCTGCTGGAGTTGATGAGGCAGTACTGGCACACGGATAAGGTG
TCACGCCAGCATGGCAACTCAGCTGAGCGCGACATATGGAAGGCGAGTAA
GTCTCCTACAGCTCACCGCCAACCTCGGCGGCAGCTCACCGAGCCGGGCG
GGGGCGACGCGGTATACGCCAAGTTTCTCAACTGGGCGTCCTACAAGAGC
TTTAAGGAGCGACAGAGCGACGACTTCACTGACCCTGACCGCACGATCTT
CCTCTCGACGCGGTGCAAGTGCCTGGTCCTCCCTGCCATGGAGCAGTGCG
CGTGCAAGATCCACTCGCAGCAGGTCGACTTGCGGGCAGCGGACCCGGAT
GGTGACGGTTGGATGGGGCGGAAACCGGAGTGCAACGCTTTGGACTGCGC
GAAGTGTGGGTTCGGGGGGGCTGACGGCATTCCCATCTGCAGCAAGCAAG
AGAACTCCGAGCAGACGGTGGTGTGGAAGATGTTCGAGGACGTGATCACT
GCGCCTGCATCAGCAGATGGGAAGATCAAGGCCAAGAAACTCGCCAACCA
GACCGTGCCGAAGGAGGGTAAGCTCTGCGATCTTTGGTCGGCTTTCAAAG
GGCACACCAAGCTGTACATGGCTCACCACTCTATCGCTAAGTGGCAAAGG
CACTGCCACGGGCGTTGCTTGGAGACGTTTCAGGACGGTGACCTTGTCAT
CGAGACCGACTTTGCCGAGAAGTACACCCACCAATCCTTCATCAGCATGA
TGATGCCTGTTTACCCGCAGACAACGCTCATGGTGGCCATCGCACACTTC
AACCCGCAGACGCACGTGGGGGGTGGCAGGGTGCACGTGACGGAAACATG
GATCTTTGCATCTGAAGTCATGGCGCATGACTGCGATTTCCACCTGCACG
GCTTGGCCAGGATGGCGGACTACTACCTGCGTGGAGATGGGAGCGAAGCA
ACAGCTGCCGCCCAGAACGATGGCCGGACGCCCCGGATTCACATGTTCAC
GGACGGATGCGGGAAGCAGTACCAGGGAAGGCGGAATTTCCGCTTCTTGG
TCGACAGCGTGCGGCAAATCGCCTTTTTTATCGACCACCACTTCGCGGCC
ACATCTCACTTCAAAGGTTGCCATGATGGGATTAGCGGAGTGGCAAAGAG
CGTCATGAACAGGAGGGAGAGATTTGGCAAGCGAATCATGGGGGCGGACG
GGGTGATCAGCTTTTTGCGAAGTTCTTTCGGGAGGAGGCAGGCAGCGAGG
GGGAGGAGGGTATGCCGAAGTATTTCTTGAAGTGGTCTCCGTACCGCATG
CGGAGGGTGCACGTCGAGTTTATCGGCAAGAAGGAGATATGTCGGCCAAA
CTCGGTCCTGGCAGGCATAGAGGGTACACGAGACATGTACCACTTCGCGG
AAGCAAACACTCCCAAGTGGGATGGGTACACCACGACCGAGGGGCGCGAA
GATGACTGCAAGCTGGTACGAAAGAGCGAGGGGCGGGGTAGCTTGTCGAG
TCAAGAGAAGAGCAGGTTGCGGGAAGTCAAAGTGTTGGGTGCAGTAGCGA
GCAGATGGAAGGGTAAGGGGGCTGGGTTGCAGGATCCGGTGTCGGGGGAG
GAAGTCGTGACCTGCAGAAAGGTGAAACGGACGTACAGGCTTAGGACTCG
GCTGGCGTCGTGCTTCTGCTCGGCGTGCCAGCGTTGCGAGTATGAGCAGT
GCTACGTCAGCAAGACATACCCACGTCTCGTTCCCGCATTGCAAGAGGGC
GAAGTGAAGGAAACGGTGATCATGGACACTGGAGTAGCGCCCGTAGACGA
GGTTAACTCCCGGGGGATCCAGTTCGGGAGTAGAAGGAACGCAGGATGGA
GAGAATGATTGGCACACAATGGGAAGAGTGCGAATCTGCTGCTGCGTCAA
AGATTTGGGAAGAGCTTGGTAGGAAGGAAGAGCCCAATATTTTTGCCCGT
TTCGGGCGGTGGGCTGGTTTTTAAGTGTGCTTCTTGTATTTGCTTCTGGA
GCAGTAGGTGGGGTTCAACGCCCATTTGAGGTACAACTTGGGGGT

protein sequence of EsuBft1080_4a-0001

>EsuBft1080_4 ID=EsuBft1080_4|Name=EsuBft1080_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=598bp
MVLRGVGRTQSRVVTIQPAEPTAPVDWRQQSTETFLASMDSMGYDNALKH
LEKIGSTFAKDTRKRLRGLEDKVSTAVSLERAIEQAQKQRRTKERSRTLQ
SILTAAAFPVDGVDEVPSLSAARRAKALRVRQHAFNSAVERAKNLLSDLD
PTEAIKCGVYWFRPRAKQSNAASEELLELMRQYWHTDKVSRQHGNSAERD
IWKASKSPTAHRQPRRQLTEPGGGDAVYAKFLNWASYKSFKERQSDDFTD
PDRTIFLSTRCKCLVLPAMEQCACKIHSQQVDLRAADPDGDGWMGRKPEC
NALDCAKCGFGGADGIPICSKQENSEQTVVWKMFEDVITAPASADGKIKA
KKLANQTVPKEGKLCDLWSAFKGHTKLYMAHHSIAKWQRHCHGRCLETFQ
DGDLVIETDFAEKYTHQSFISMMMPVYPQTTLMVAIAHFNPQTHVGGGRV
HVTETWIFASEVMAHDCDFHLHGLARMADYYLRGDGSEATAAAQNDGRTP
RIHMFTDGCGKQYQGRRNFRFLVDSVRQIAFFIDHHFAATSHFKGCHDGI
SGVAKSVMNRRERFGKRIMGADGVISFLRSSFGRRQAARGRRVCRSIS

mRNA from alignment at Scaffold_412:406303..409632+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1080_4a-0001 ID=EsuBft1080_4a-0001|Name=EsuBft1080_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3330bp|location=Sequence derived from alignment at Scaffold_412:406303..409632+ (Ectocarpus subulatus male Bft15b)
GACAAGCACGTCGTCAAGCTCAGCTGGAGGCTTGTCTCCGAACGTGGGGT
GCTGGTGACCGCGACTCGTTGACTCGAAGCACAAGAACAGGAGCTCACAA
ACCTACAGTTGCTACGCGAAGAACACCGAAGAGGCGGTCAGCGAAAAGGC
CAAGGAGCTGACTGACAAGGTCCTCAGAAACAAGCGCGAGCAGTCGCAAA
AGGCGCAGCAGCGGTCTGGTGGTGGCAGCAGCAGCGGAGGCGTTAGGAGG
ACAGCGGATAGCGCCGTCGCCGACCCTGTTATCATGGTTTTGCGGGGTGT
CGGGAGAACCCAATCCAGGGTGGTGACAATTCAGCCAGCTGAGCCGGTGA
GATGCTAATGTCGCTAGAGGTTTCAGTCAATCAACAGCACAGCAGATCAG
TTGTCGAGGTCTACTTACGGTGCACTCATCAATCAATCAACGCATGCGGT
AATTTCGCCGACACGAATAATTGCGCCGAGGGGTTTTAACTTCCACCGAG
AGGATCGAGTTGCATGAAACGTCGCGTAGTTCTACAGCGAGAGCTCGTCT
ATGTCAGCTCCCACGGAAACTAAGTGCCCAATTTTTGCAAATTGTCTCCC
TATCAGTCGTGCCTTGCGCTTATGTATTATTGCGTTGCGCAACGTCGTAC
CCCCCGCCTCCTCGTTCTTCATGTGTGCACACAGACGGCGCCGGTCGACT
GGCGCCAGCAGTCTACGGAAACGTTTCTCGCGTCCATGGACAGCATGGGG
TATGACAACGCGCTGAAACACTTGGAAAAAATCGGCTCGACGTTTGCAAA
GGACACCCGTAAACGCTTGCGAGGGTTGGAAGACAAGGTCAGCACAGCAG
TCTCGTTGGAGCGAGCAATCGAGCAGGCGCAAAAGCAACGTAGAACCAAG
GAGAGAAGCCGCACGTTGCAATCGATCCTCACCGCTGCGGCCTTTCCTGT
GGATGGCGTAGACGAGGTTCCATCGTTGTCGGCAGCACGTAGGGCAAAGG
CGCTAAGGGTTCGCCAGCACGCCTTCAACTCCGCGGTGGAGCGTGCCAAG
AATTTGCTGTCCGATCTTGATCCAACCGAGGCGATAAAATGCGGTGTCTA
CTGGTTTCGGCCCCGAGCTAAGCAAAGCAATGCCGCCAGCGAAGAGCTGC
TGGAGTTGATGAGGCAGTACTGGCACACGGATAAGGTGTCACGCCAGCAT
GGCAACTCAGCTGAGCGCGACATATGGAAGGCGAGTAAGTCTCCTACAGC
TCACCGCCAACCTCGGCGGCAGCTCACCGAGCCGGGCGGGGGCGACGCGG
TATACGCCAAGTTTCTCAACTGGGCGTCCTACAAGAGCTTTAAGGAGCGA
CAGAGCGACGACTTCACTGACCCTGACCGCACGATCTTCCTCTCGACGCG
GTGCAAGTGCCTGGTCCTCCCTGCCATGGAGCAGTGCGCGTGCAAGATCC
ACTCGCAGCAGGTGCTATACATCGAGGTCCTGGCCAATGTCGACATGACC
AGTCACGGGGAATGCCGGTGTCGATGGTGCAACGCAGATGGCGGCAGCAG
GTGGCGGGAAACGTGAAAGCACTTGGGCACATTCTCCGATGCGATTGCCT
GCCCCAAGGTCGACTTGCGGGCAGCGGACCCGGATGGTGACGGTTGGATG
GGGCGGAAACCGGAGTGCAACGCTTTGGACTGCGCGAAGTGTGGGTTCGG
GGGGGCTGACGGCATTCCCATCTGCAGCAAGCAAGAGAACTCCGAGCAGA
CGGTGGTGTGGAAGATGTTCGAGGACGTGATCACTGCGCCTGCATCAGCA
GATGGGAAGATCAAGGCCAAGAAACTCGCCAACCAGACCGTGCCGAAGGA
GGGTAAGCTCTGCGATCTTTGGTCGGCTTTCAAAGGGCACACCAAGCTGT
ACATGGCTCACCACTCTATCGCTAAGTGGCAAAGGCACTGCCACGGGCGT
TGCTTGGAGACGTTTCAGGACGGTGACCTTGTCATCGAGACCGACTTTGC
CGAGAAGTACACCCACCAATCCTTCATCAGCATGATGATGCCTGTTTACC
CGCAGACAACGCTCATGGTGGCCATCGCACACTTCAACCCGCAGACGCAC
GTGGGGGGTGGCAGGGTGCACGTGACGGAAACATGGATCTTTGCATCTGA
AGTCATGGCGCATGACTGCGATTTCCACCTGCACGGCTTGGCCAGGATGG
CGGACTACTACCTGCGTGGAGATGGGAGCGAAGCAACAGCTGCCGCCCAG
AACGATGGCCGGACGCCCCGGATTCACATGTTCACGGACGGATGCGGGAA
GCAGTACCAGGGAAGGCGGAATTTCCGCTTCTTGGTCGACAGCGTGCGGC
AAATCGCCTTTTTTATCGACCACCACTTCGCGGCCACATCTCACTTCAAA
GGTTGCCATGATGGGATTAGCGGAGTGGCAAAGAGCGTCATGAACAGGAG
GGAGAGATTTGGCAAGCGAATCATGGGGGCGGACGGGGTGATCAGCTTTT
TGCGAAGTTCTTTCGGGAGGAGGCAGGCAGCGAGGGGGAGGAGGGTATGC
CGAAGTATTTCTTGAAGTGGTCTCCGTACCGCATGCGGAGGGTGCACGTC
GAGTTTATCGGCAAGAAGGAGATATGTCGGCCAAACTCGGTCCTGGCAGG
CATAGAGGGTACACGAGACATGTACCACTTCGCGGAAGCAAACACTCCCA
AGTGGGATGGGTACACCACGACCGAGGGGCGCGAAGATGACTGCAAGCTG
GTACGAAAGAGCGAGGGGCGGGGTAGCTTGTCGAGTCAAGAGAAGAGCAG
GTTGCGGGAAGTCAAAGTGTTGGGTGCAGTAGCGAGCAGATGGAAGGGTA
AGGGGGCTGGGTTGCAGGATCCGGTGTCGGGGGAGGAAGTCGTGACCTGC
AGAAAGGTGAAACGGACGTACAGGCTTAGGACTCGGCTGGCGTCGTGCTT
CTGCTCGGCGTGCCAGCGTTGCGAGTATGAGCAGTGCTACGTCAGCAAGA
CATACCCACGTCTCGTTCCCGCATTGCAAGAGGGCGAAGTGAAGGAAACG
GTGATCATGGACACTGGAGTAGCGCCCGTAGACGAGGTTAACTCCCGGGG
GATCCAGTTCGGGAGTAGAAGGAACGCAGGATGGAGAGAATGATTGGCAC
ACAATGGGAAGAGTGCGAATCTGCTGCTGCGTCAAAGATTTGGGAAGAGC
TTGGTAGGAAGGAAGAGCCCAATATTTTTGCCCGTTTCGGGCGGTGGGCT
GGTTTTTAAGTGTGCTTCTTGTATTTGCTTCTGGAGCAGTAGGTGGGGTT
CAACGCCCATTTGAGGTACAACTTGGGGGT

Coding sequence (CDS) from alignment at Scaffold_412:406303..409632+

>EsuBft1080_4a-0001 ID=EsuBft1080_4a-0001|Name=EsuBft1080_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1797bp|location=Sequence derived from alignment at Scaffold_412:406303..409632+ (Ectocarpus subulatus male Bft15b)
ATGGTTTTGCGGGGTGTCGGGAGAACCCAATCCAGGGTGGTGACAATTCA
GCCAGCTGAGCCGACGGCGCCGGTCGACTGGCGCCAGCAGTCTACGGAAA
CGTTTCTCGCGTCCATGGACAGCATGGGGTATGACAACGCGCTGAAACAC
TTGGAAAAAATCGGCTCGACGTTTGCAAAGGACACCCGTAAACGCTTGCG
AGGGTTGGAAGACAAGGTCAGCACAGCAGTCTCGTTGGAGCGAGCAATCG
AGCAGGCGCAAAAGCAACGTAGAACCAAGGAGAGAAGCCGCACGTTGCAA
TCGATCCTCACCGCTGCGGCCTTTCCTGTGGATGGCGTAGACGAGGTTCC
ATCGTTGTCGGCAGCACGTAGGGCAAAGGCGCTAAGGGTTCGCCAGCACG
CCTTCAACTCCGCGGTGGAGCGTGCCAAGAATTTGCTGTCCGATCTTGAT
CCAACCGAGGCGATAAAATGCGGTGTCTACTGGTTTCGGCCCCGAGCTAA
GCAAAGCAATGCCGCCAGCGAAGAGCTGCTGGAGTTGATGAGGCAGTACT
GGCACACGGATAAGGTGTCACGCCAGCATGGCAACTCAGCTGAGCGCGAC
ATATGGAAGGCGAGTAAGTCTCCTACAGCTCACCGCCAACCTCGGCGGCA
GCTCACCGAGCCGGGCGGGGGCGACGCGGTATACGCCAAGTTTCTCAACT
GGGCGTCCTACAAGAGCTTTAAGGAGCGACAGAGCGACGACTTCACTGAC
CCTGACCGCACGATCTTCCTCTCGACGCGGTGCAAGTGCCTGGTCCTCCC
TGCCATGGAGCAGTGCGCGTGCAAGATCCACTCGCAGCAGGTCGACTTGC
GGGCAGCGGACCCGGATGGTGACGGTTGGATGGGGCGGAAACCGGAGTGC
AACGCTTTGGACTGCGCGAAGTGTGGGTTCGGGGGGGCTGACGGCATTCC
CATCTGCAGCAAGCAAGAGAACTCCGAGCAGACGGTGGTGTGGAAGATGT
TCGAGGACGTGATCACTGCGCCTGCATCAGCAGATGGGAAGATCAAGGCC
AAGAAACTCGCCAACCAGACCGTGCCGAAGGAGGGTAAGCTCTGCGATCT
TTGGTCGGCTTTCAAAGGGCACACCAAGCTGTACATGGCTCACCACTCTA
TCGCTAAGTGGCAAAGGCACTGCCACGGGCGTTGCTTGGAGACGTTTCAG
GACGGTGACCTTGTCATCGAGACCGACTTTGCCGAGAAGTACACCCACCA
ATCCTTCATCAGCATGATGATGCCTGTTTACCCGCAGACAACGCTCATGG
TGGCCATCGCACACTTCAACCCGCAGACGCACGTGGGGGGTGGCAGGGTG
CACGTGACGGAAACATGGATCTTTGCATCTGAAGTCATGGCGCATGACTG
CGATTTCCACCTGCACGGCTTGGCCAGGATGGCGGACTACTACCTGCGTG
GAGATGGGAGCGAAGCAACAGCTGCCGCCCAGAACGATGGCCGGACGCCC
CGGATTCACATGTTCACGGACGGATGCGGGAAGCAGTACCAGGGAAGGCG
GAATTTCCGCTTCTTGGTCGACAGCGTGCGGCAAATCGCCTTTTTTATCG
ACCACCACTTCGCGGCCACATCTCACTTCAAAGGTTGCCATGATGGGATT
AGCGGAGTGGCAAAGAGCGTCATGAACAGGAGGGAGAGATTTGGCAAGCG
AATCATGGGGGCGGACGGGGTGATCAGCTTTTTGCGAAGTTCTTTCGGGA
GGAGGCAGGCAGCGAGGGGGAGGAGGGTATGCCGAAGTATTTCTTGA