EsuBft1080_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1080_3a-0001
Unique NameEsuBft1080_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_412contigScaffold_412:401606..403000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog3880.AES88301
ProteomeIdEsuBft1080_3
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl35493|Streptophyta
Length1095
Hectar predicted targeting categoryother localisation
Evalue4.1e-17
EggNOG OGsCOG0173@1|root,COG2801@1|root,KOG0017@2759|Eukaryota,KOG2411@2759|Eukaryota,37R5P@33090|Viridiplantae,3GB23@35493|Streptophyta,4JK1N@91835|fabids
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00002,RC00055,RC00078,RC00523
KEGG koko:K00913,ko:K01876
KEGG ReactionR03428,R03429,R03479,R05577
KEGG Pathwayko00562,ko00970,ko01100,ko04070,map00562,map00970,map01100,map04070
KEGG ModuleM00132,M00359,M00360
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009536,GO:0016020,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EC2.7.1.134,2.7.1.159,6.1.1.12
DescriptionAspartyl-tRNA synthetase
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Cross References
External references for this mRNA
DatabaseAccession
GO0043170
GO0003824
GO0044238
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1080_3aEsuBft1080_3aEctocarpus subulatus male Bft15bgeneScaffold_412 401606..403000 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1080_3a-0001-exonEsuBft1080_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_412 401606..402041 -
EsuBft1080_3a-0001-exonagat-exon-63077Ectocarpus subulatus male Bft15bexonScaffold_412 402237..402431 -
EsuBft1080_3a-0001-exonagat-exon-63076Ectocarpus subulatus male Bft15bexonScaffold_412 402537..403000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1080_3a-0001-cdsEsuBft1080_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_412 401606..402041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1080_3a-0001EsuBft1080_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_412 401606..403000 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1080_3a-0001 ID=EsuBft1080_3a-0001|Name=EsuBft1080_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1095bp|location=Sequence derived from alignment at Scaffold_412:401606..403000- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGAGAACGGACCCGGCGGCCTAGCCCTGAAGGTGGAGTCGGCCGA
CCTGTGGCACAGACTCAAGGGCCATATCAACAGCAAGAGTTTGGACATCT
TGAGGAAGGCACCCAACGCGGAGTGTCTTGCTGTTGGGTATGCTAGACGC
CGACCTGGTAACGGCGTCAACAACGGCGTCAACCGCGAAGTTCGGATCTC
CTATTCGTATACCGCGAAGGGGGAGTTTCCCGACGTCGCCCACAAGGACG
GCTCCTTCGGATTCGCCGAATACGCATATGCAGCAGGAACAGTCCAACCG
GATGTTCCAAAGACCATCGAAGAAGCACGAGAATCCAGGAACGCAGCACA
GTGGATCGCTGCGGCCGAACGGGAAATTGCAAACCTTACAGATCGCAAAG
TTTACAAGCTCGTCCTGCGTTCGAACGTTCCCCAAGGGAGACGAAGGATA
AACTCCAGATGGGTGACCCAAAGCGTTCGGGTTGTACTATGCATCACCGT
TGAATTCGACTTGATCATCGTTCAGATGGACGTCACCGCTGCTTTCCTCC
ACGCGGACATTCAGGAGGAAACTCTCCTAAACCAGGAGGAAACGCGACGG
TACCAGGGCATCGTGGGGTGCCTCATGTACCTCGCTCAAATACTGCGTTA
CGACATCATTCACCGAACGATGCTATACGATGCACTGATGGCGTTCAAGT
CTGGGCTACAAAGCCTGACTGCTCAATCGACCATGGAGGCGGAGCTGGTT
GCTGCGGCTCTGGCGATGAAGGAAGCAGTGTTCTGCTCCAACATACTGAC
TGAACTTGGATTCGGCAAGGAGTTTGCGCAAGTACCGCTGTACTGCGACA
ACACGGCGACACTACACTCGCTGGGGAACCGCTCCCACAGCTCGAGGACG
AAGCACATCGCGCTTCGATTCTTCTTTATCCGAGATCTCGTGTCGGAGGG
AAAGATCTTCATCCACTTCGTCCCGACCGACAGCAACCCCGCCGACATCG
GCACCAAGCACCTCAACAAGGACCGCTTCCAACACCTACTCAACATGATC
AAGAATTTCAACGTGAACGACTTCATCAACAGCAAGTTCAAATAA
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protein sequence of EsuBft1080_3a-0001

>EsuBft1080_3 ID=EsuBft1080_3|Name=EsuBft1080_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=364bp
MIENGPGGLALKVESADLWHRLKGHINSKSLDILRKAPNAECLAVGYARR
RPGNGVNNGVNREVRISYSYTAKGEFPDVAHKDGSFGFAEYAYAAGTVQP
DVPKTIEEARESRNAAQWIAAAEREIANLTDRKVYKLVLRSNVPQGRRRI
NSRWVTQSVRVVLCITVEFDLIIVQMDVTAAFLHADIQEETLLNQEETRR
YQGIVGCLMYLAQILRYDIIHRTMLYDALMAFKSGLQSLTAQSTMEAELV
AAALAMKEAVFCSNILTELGFGKEFAQVPLYCDNTATLHSLGNRSHSSRT
KHIALRFFFIRDLVSEGKIFIHFVPTDSNPADIGTKHLNKDRFQHLLNMI
KNFNVNDFINSKFK
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mRNA from alignment at Scaffold_412:401606..403000-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1080_3a-0001 ID=EsuBft1080_3a-0001|Name=EsuBft1080_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1395bp|location=Sequence derived from alignment at Scaffold_412:401606..403000- (Ectocarpus subulatus male Bft15b)
ATGATCGAGAACGGACCCGGCGGCCTAGCCCTGAAGGTGGAGTCGGCCGA
CCTGTGGCACAGACTCAAGGGCCATATCAACAGCAAGAGTTTGGACATCT
TGAGGAAGGCACCCAACGCGGAGTGTCTTGCTGTTGGGTATGCTAGACGC
CGACCTGGTAACGGCGTCAACAACGGCGTCAACCGCGAAGTTCGGATCTC
CTATTCGTATACCGCGAAGGGGGAGTTTCCCGACGTCGCCCACAAGGACG
GCTCCTTCGGATTCGCCGAATACGCATATGCAGCAGGAACAGTCCAACCG
GATGTTCCAAAGACCATCGAAGAAGCACGAGAATCCAGGAACGCAGCACA
GTGGATCGCTGCGGCCGAACGGGAAATTGCAAACCTTACAGATCGCAAAG
TTTACAAGCTCGTCCTGCGTTCGAACGTTCCCCAAGGGAGACGAAGGATA
AACTCCAGATGGGTGTTCAAGCACAAGGCCGACCGTTCCTTCAAAGGACG
CCTTGTGGCACAAGGATAAAATCAAATTCATGGTCGAGACTGCGGTGGCA
CCTATGCTCCGGTATGCAGGACCCAAAGCGTTCGGGTTGTACTATGCATC
ACCGTTGAATTCGACTTGATCATCGTTCAGATGGACGTCACCGCTGCTTT
CCTCCACGCGGACATTCAGGAGGAAACTCTCCTAAACCAGGAGGAAACGC
GACGGTACCAGGGCATCGTGGGGTGCCTCATGTACCTCGCTCAAATACTG
CGTTACGACATCATGTACGCTACAAGCCAACTGGCTCGCCCGATGGCGAA
GTCGAGCAAGAATCACATGGGGGCAGCGAAGGGCACCTCCGCTACCTCGC
TGGCATGACAGATTTCAAGATCACCGACAAGAGGGGAGGCTTCAAGCTTA
AAGCCTTCACGGACTCCAACAGGGGAAACAACCCGGCCAAACGGAAAGTC
CACCTCTAGTCACCGAACGATGCTATACGATGCACTGATGGCGTTCAAGT
CTGGGCTACAAAGCCTGACTGCTCAATCGACCATGGAGGCGGAGCTGGTT
GCTGCGGCTCTGGCGATGAAGGAAGCAGTGTTCTGCTCCAACATACTGAC
TGAACTTGGATTCGGCAAGGAGTTTGCGCAAGTACCGCTGTACTGCGACA
ACACGGCGACACTACACTCGCTGGGGAACCGCTCCCACAGCTCGAGGACG
AAGCACATCGCGCTTCGATTCTTCTTTATCCGAGATCTCGTGTCGGAGGG
AAAGATCTTCATCCACTTCGTCCCGACCGACAGCAACCCCGCCGACATCG
GCACCAAGCACCTCAACAAGGACCGCTTCCAACACCTACTCAACATGATC
AAGAATTTCAACGTGAACGACTTCATCAACAGCAAGTTCAAATAA
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Coding sequence (CDS) from alignment at Scaffold_412:401606..403000-

>EsuBft1080_3a-0001 ID=EsuBft1080_3a-0001|Name=EsuBft1080_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1095bp|location=Sequence derived from alignment at Scaffold_412:401606..403000- (Ectocarpus subulatus male Bft15b)
ATGATCGAGAACGGACCCGGCGGCCTAGCCCTGAAGGTGGAGTCGGCCGA
CCTGTGGCACAGACTCAAGGGCCATATCAACAGCAAGAGTTTGGACATCT
TGAGGAAGGCACCCAACGCGGAGTGTCTTGCTGTTGGGTATGCTAGACGC
CGACCTGGTAACGGCGTCAACAACGGCGTCAACCGCGAAGTTCGGATCTC
CTATTCGTATACCGCGAAGGGGGAGTTTCCCGACGTCGCCCACAAGGACG
GCTCCTTCGGATTCGCCGAATACGCATATGCAGCAGGAACAGTCCAACCG
GATGTTCCAAAGACCATCGAAGAAGCACGAGAATCCAGGAACGCAGCACA
GTGGATCGCTGCGGCCGAACGGGAAATTGCAAACCTTACAGATCGCAAAG
TTTACAAGCTCGTCCTGCGTTCGAACGTTCCCCAAGGGAGACGAAGGATA
AACTCCAGATGGGTGACCCAAAGCGTTCGGGTTGTACTATGCATCACCGT
TGAATTCGACTTGATCATCGTTCAGATGGACGTCACCGCTGCTTTCCTCC
ACGCGGACATTCAGGAGGAAACTCTCCTAAACCAGGAGGAAACGCGACGG
TACCAGGGCATCGTGGGGTGCCTCATGTACCTCGCTCAAATACTGCGTTA
CGACATCATTCACCGAACGATGCTATACGATGCACTGATGGCGTTCAAGT
CTGGGCTACAAAGCCTGACTGCTCAATCGACCATGGAGGCGGAGCTGGTT
GCTGCGGCTCTGGCGATGAAGGAAGCAGTGTTCTGCTCCAACATACTGAC
TGAACTTGGATTCGGCAAGGAGTTTGCGCAAGTACCGCTGTACTGCGACA
ACACGGCGACACTACACTCGCTGGGGAACCGCTCCCACAGCTCGAGGACG
AAGCACATCGCGCTTCGATTCTTCTTTATCCGAGATCTCGTGTCGGAGGG
AAAGATCTTCATCCACTTCGTCCCGACCGACAGCAACCCCGCCGACATCG
GCACCAAGCACCTCAACAAGGACCGCTTCCAACACCTACTCAACATGATC
AAGAATTTCAACGTGAACGACTTCATCAACAGCAAGTTCAAATAA
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