EsuBft1080_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1080_2a-0001
Unique NameEsuBft1080_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_412contigScaffold_412:392569..393077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1080_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length33
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1080_2aEsuBft1080_2aEctocarpus subulatus male Bft15bgeneScaffold_412 392569..393077 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1080_2a-0001-exonEsuBft1080_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_412 392569..392600 +
EsuBft1080_2a-0001-exonagat-exon-63075Ectocarpus subulatus male Bft15bexonScaffold_412 392775..393077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1080_2a-0001-cdsEsuBft1080_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_412 392569..392600 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1080_2a-0001-exonagat-three_prime_utr-757Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_412 392851..393077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1080_2a-0001EsuBft1080_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_412 392569..392850 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1080_2a-0001 ID=EsuBft1080_2a-0001|Name=EsuBft1080_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=335bp|location=Sequence derived from alignment at Scaffold_412:392569..393077+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTATTGAACGCGACGGTGACCGCGAGAGATTCACTTGGGCGTTCAT
TCTGGCCTTCTCAAAATTCGAAAAAGTGAGCCATTCCCGGGGTCTTGGAA
TACAGTAGCGGCTACGGTTTAAGAGAGGGTCGGTACAAGCCAATTTCACT
CTCTTAAATCCGGCTTTCTGTTATATCGTGTTGGCTACGGTATAAGAGAG
AATCCTCTTAAACAGTATCTCGCTATAAGAGAATATTCTCTTATATCGTA
GCCAAAACTAAAGGTCGTGAAACAGGGACTCTCGCGCACTGACTACACTC
GAATGCCAAAATAGGTCATGAAAAGAGCGTATCAT
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protein sequence of EsuBft1080_2a-0001

>EsuBft1080_2 ID=EsuBft1080_2|Name=EsuBft1080_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=35bp
MFIERDGDRERFTWAFILAFSKFEKVSHSRGLGIQ
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mRNA from alignment at Scaffold_412:392569..393077+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1080_2a-0001 ID=EsuBft1080_2a-0001|Name=EsuBft1080_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=509bp|location=Sequence derived from alignment at Scaffold_412:392569..393077+ (Ectocarpus subulatus male Bft15b)
ATGTTTATTGAACGCGACGGTGACCGCGAGAGGTGCTTTTTTTTCCAAAC
GCGAATGAATCTTGGTTGCTTTTGGCGTGCAATCCTCGTTGTCCTCCCCT
CTTTGCATCATCACAGCTAGCTGCTTTGGATTGGCAAAGGGATTGTTGCT
CTGCTGTGTTTTCAAGGTTAAGCGTTGGTGTGTTTCTCTCAAAAGGTGTG
CCGCAGATTCACTTGGGCGTTCATTCTGGCCTTCTCAAAATTCGAAAAAG
TGAGCCATTCCCGGGGTCTTGGAATACAGTAGCGGCTACGGTTTAAGAGA
GGGTCGGTACAAGCCAATTTCACTCTCTTAAATCCGGCTTTCTGTTATAT
CGTGTTGGCTACGGTATAAGAGAGAATCCTCTTAAACAGTATCTCGCTAT
AAGAGAATATTCTCTTATATCGTAGCCAAAACTAAAGGTCGTGAAACAGG
GACTCTCGCGCACTGACTACACTCGAATGCCAAAATAGGTCATGAAAAGA
GCGTATCAT
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Coding sequence (CDS) from alignment at Scaffold_412:392569..393077+

>EsuBft1080_2a-0001 ID=EsuBft1080_2a-0001|Name=EsuBft1080_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=108bp|location=Sequence derived from alignment at Scaffold_412:392569..393077+ (Ectocarpus subulatus male Bft15b)
ATGTTTATTGAACGCGACGGTGACCGCGAGAGATTCACTTGGGCGTTCAT
TCTGGCCTTCTCAAAATTCGAAAAAGTGAGCCATTCCCGGGGTCTTGGAA
TACAGTAG
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