EsuBft1080_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1080_10a-0001
Unique NameEsuBft1080_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_412contigScaffold_412:452982..454987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1080_10
Protein domainsTMhelix
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length176
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1080_10aEsuBft1080_10aEctocarpus subulatus male Bft15bgeneScaffold_412 452982..454987 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1080_10a-0001EsuBft1080_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_412 454260..454987 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1080_10a-0001-exonagat-exon-63093Ectocarpus subulatus male Bft15bexonScaffold_412 452982..454084 -
EsuBft1080_10a-0001-exonEsuBft1080_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_412 454219..454612 -
EsuBft1080_10a-0001-exonagat-exon-63095Ectocarpus subulatus male Bft15bexonScaffold_412 454671..454861 -
EsuBft1080_10a-0001-exonagat-exon-63094Ectocarpus subulatus male Bft15bexonScaffold_412 454914..454987 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1080_10a-0001-exonagat-three_prime_utr-755Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_412 452982..454084 -
EsuBft1080_10a-0001-exonagat-three_prime_utr-756Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_412 454219..454259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1080_10a-0001-cdsEsuBft1080_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_412 454260..454612 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1080_10a-0001 ID=EsuBft1080_10a-0001|Name=EsuBft1080_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1762bp|location=Sequence derived from alignment at Scaffold_412:452982..454987- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGAATACAAAGCGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAA
AGGGGCGAAGGGCGCAGAGCAAGCGGGCAAGGTTGTGGTCGTGGCGGCGG
CCGTGGCCGCAGCAGCAGTCGTGGCCGCGGCGGAGGCGGTCGCGGCGGCG
GTGGCGGCGGTCGCGGCGGCCGCTCAGGCGGATCCGGAGGAGTCGAGGAG
AGCAAGGGAAGCAGCAGTGGAGGCGCCGATGGCGGCGGTGGCGGGGACTA
TAAGTTCCCGGGCCGGACTTCGTGCCGTGGTGTGCGCGCTGCGAGGGGTG
GGGCCACACCAAAGAAAGTGCGCGACGGAGGAGGCCGTCCTAGCCCAAGT
GGTGGAGCATGAGAGCGACGTGGACTCCGTGGAAGACCAGGCGTTTTGTG
CCGTGGCAGTCCCCCCAGGCGAGTGTGGTACCGTCGGTGAAGTAGGTCTA
GTGGGGGTTGTGGAACAAGACAAGGCGGTGTACGTGCCCGACACAGCGGC
CACGTGCTCCATGTTCCGATGTGCAGACAACTTCGTGAACTACCGTGAGC
GTAGCGGTTGGGTGAAGGGGATCGGAGGCGACAAGGCCCCCGTTCCTCTT
CTAGATACGGAGATGTGACCATAGTCAAACAGACGGAAGATAGTGGAGTA
CCCGTACCATACTGAATGCTGGCCATGTACCAGAGGCCCCCTACAACCTC
CTCTCGCTGTCTTCGTTGGCGGAGGAGGGCCACACGTATTCGGGGATGAA
GGGGAGCCTCACGCTGACCGCGAAAGCCGGGGGGGAGGTGTGGTTCCCCC
GGACTGGAAAGCTGCTGACCCAACGAGGCTATCAGATAAAGCCAACGCTA
CACATCGCTTGTGCCGCATTGTTCCTGGCGATGCGAAAGCAGCCACCCCC
ACTGACCTCAACGAGTACCACCTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTCTTGGCTGTTCGATGTCCAAGGGACAGGTG
AAACCCGTCCAGAAGAGCACGAGCACACGCGCAGTTAAGAAGTTATTTCG
CGTGTATCTCGACTTGGGGGGAAAGATGACAACCAGGAGCATTGGCGGCA
ACGGGTACACACTGATCATCAGAAACGATTTTTCCCGTTGGACGCGTGTT
TTGTTCTTGAAACACAAGTCTGACGCAGCGGTTGGGTTTGAGAAGTCCCT
GGCGGACTACCGAACGAAAGGGGTTCCGTGTGAGGTTTATATCGCACGTG
TCGACGGTGGCGGCGAGTTCCAGGGGCAGTTGCGGAAGCTTGCCGCAGAC
ACGGCATCAAACAAGAGTCCACCCCCCCTCACACCCCAAAATACAACGGT
GTAGCGGAGAGAGCGCTAGGGTCGATCACTGATGCCGCGCTTGCGTCACG
CATCCAAGCGACTCAACTGTTCCCCGACGCACCGAACCACCCCGGGTTGT
GGGCCGAGGCCATTTCGTGTGCATGCCATCAGCTGAACTGCACCGCCACT
AAATCAAACGAGGGAGACAAATCCGCCTACGAGATGTTCCACGACTCCCC
ACCGCCTGTCGGGTCTACATACCCGTTTCTCAAACCAGCCGTGTTCAAGT
CGAGAAGAAAAGTAAAGTCGCAACCCTACGGCGAAAAAGGATGGTACCTT
GGTCCTGCCCAC
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protein sequence of EsuBft1080_10a-0001

>EsuBft1080_10 ID=EsuBft1080_10|Name=EsuBft1080_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=205bp
MIEYKAIKDKLEQGKGKGAKGAEQAGKVVVVAAAVAAAAVVAAAEAVAAA
VAAVAAAAQADPEESRRAREAAVEAPMAAVAGTISSRAGLRAVVCALRGV
GPHQRKCATEEAVLAQVVEHESDVDSVEDQAFCAVAVPPGECGTVGEVGL
VGVVEQDKAVYVPDTAATCSMFRCADNFVNYRERSGWVKGIGGDKAPVPL
LDTEM
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mRNA from alignment at Scaffold_412:452982..454987-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1080_10a-0001 ID=EsuBft1080_10a-0001|Name=EsuBft1080_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2006bp|location=Sequence derived from alignment at Scaffold_412:452982..454987- (Ectocarpus subulatus male Bft15b)
ATGATCGAATACAAAGCGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAA
AGGGGCGAAGGGCGCAGAGCAAGCGTACTTCGCCGACGGTAAGGGCCGCA
GGGAGCGGTACTCAAGTAGGAGTCAGGGGCAAGGTTGTGGTCGTGGCGGC
GGCCGTGGCCGCAGCAGCAGTCGTGGCCGCGGCGGAGGCGGTCGCGGCGG
CGGTGGCGGCGGTCGCGGCGGCCGCTCAGGCGGATCCGGAGGAGTCGAGG
AGAGCAAGGGAAGCAGCAGTGGAGGCGCCGATGGCGGCGGTGGCGGGGAC
TATAAGTTCCCGGGCCGGTGCTTTAGGTGTGGACATCGTGGACATCAAGC
GATCGGCTGCACTACCAACGAAAAGGACTTCGTGCCGTGGTGTGCGCGCT
GCGAGGGGTGGGGCCACACCAAAGAAAGTGCGCGACGGAGGAGGCCGTCC
TAGCCCAAGTGGTGGAGCATGAGAGCGACGTGGACTCCGTGGAAGACCAG
GCGTTTTGTGCCGTGGCAGTCCCCCCAGGCGAGTGTGGTACCGTCGGTGA
AGTAGGTCTAGTGGGGGTTGTGGAACAAGACAAGGCGGTGTACGTGCCCG
ACACAGCGGCCACGTGCTCCATGTTCCGATGTGCAGACAACTTCGTGAAC
TACCGTGAGCGTAGCGGTTGGGTGAAGGGGATCGGAGGCGACAAGGCCCC
CGTTCCTCTTCTAGATACGGAGATGTGACCATAGTCAAACAGACGGAAGA
TAGTGGAGTACCCGTACCAGTACTGAATGCNGAACTACCGTGAGCGTAGC
GGTTGGGTGAAGGGGATCGGAGGCGACAAGGCCCCCGTTCCTCTTCTAGA
TACGGAGATGTGACCATAGTCAAACAGACGGAAGATAGTGGAGTACCCGT
CAGTACTGAATGCTGGCCATGTACCAGAGGCCCCCTACAACCTCCTCTCG
CTGTCTTCGTTGGCGGAGGAGGGCCACACGTATTCGGGGATGAAGGGGAG
CCTCACGCTGACCGCGAAAGCCGGGGGGGAGGTGTGGTTCCCCCGGACTG
GAAAGCTGCTGACCCAACGAGGCTATCAGATAAAGCCAACGCTACACATC
GCTTGTGCCGCATTGTTCCTGGCGATGCGAAAGCAGCCACCCCCACTGAC
CTCAACGAGTACCACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTCTTGGCTGTTCGATGTCCAAGGGACAGGTGAAACCC
GTCCAGAAGAGCACGAGCACACGCGCAGTTAAGAAGTTATTTCGCGTGTA
TCTCGACTTGGGGGGAAAGATGACAACCAGGAGCATTGGCGGCAACGGGT
ACACACTGATCATCAGAAACGATTTTTCCCGTTGGACGCGTGTTTTGTTC
TTGAAACACAAGTCTGACGCAGCGGTTGGGTTTGAGAAGTCCCTGGCGGA
CTACCGAACGAAAGGGGTTCCGTGTGAGGTTTATATCGCACGTGTCGACG
GTGGCGGCGAGTTCCAGGGGCAGTTGCGGAAGCTTGCCGCAGACACGGCA
TCAAACAAGAGTCCACCCCCCCTCACACCCCAAAATACAACGGTGTAGCG
GAGAGAGCGCTAGGGTCGATCACTGATGCCGCGCTTGCGTCACGCATCCA
AGCGACTCAACTGTTCCCCGACGCACCGAACCACCCCGGGTTGTGGGCCG
AGGCCATTTCGTGTGCATGCCATCAGCTGAACTGCACCGCCACTAAATCA
AACGAGGGAGACAAATCCGCCTACGAGATGTTCCACGACTCCCCACCGCC
TGTCGGGTCTACATACCCGTTTCTCAAACCAGCCGTGTTCAAGTCGAGAA
GAAAAGTAAAGTCGCAACCCTACGGCGAAAAAGGATGGTACCTTGGTCCT
GCCCAC
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Coding sequence (CDS) from alignment at Scaffold_412:452982..454987-

>EsuBft1080_10a-0001 ID=EsuBft1080_10a-0001|Name=EsuBft1080_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=618bp|location=Sequence derived from alignment at Scaffold_412:452982..454987- (Ectocarpus subulatus male Bft15b)
ATGATCGAATACAAAGCGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAA
AGGGGCGAAGGGCGCAGAGCAAGCGGGCAAGGTTGTGGTCGTGGCGGCGG
CCGTGGCCGCAGCAGCAGTCGTGGCCGCGGCGGAGGCGGTCGCGGCGGCG
GTGGCGGCGGTCGCGGCGGCCGCTCAGGCGGATCCGGAGGAGTCGAGGAG
AGCAAGGGAAGCAGCAGTGGAGGCGCCGATGGCGGCGGTGGCGGGGACTA
TAAGTTCCCGGGCCGGACTTCGTGCCGTGGTGTGCGCGCTGCGAGGGGTG
GGGCCACACCAAAGAAAGTGCGCGACGGAGGAGGCCGTCCTAGCCCAAGT
GGTGGAGCATGAGAGCGACGTGGACTCCGTGGAAGACCAGGCGTTTTGTG
CCGTGGCAGTCCCCCCAGGCGAGTGTGGTACCGTCGGTGAAGTAGGTCTA
GTGGGGGTTGTGGAACAAGACAAGGCGGTGTACGTGCCCGACACAGCGGC
CACGTGCTCCATGTTCCGATGTGCAGACAACTTCGTGAACTACCGTGAGC
GTAGCGGTTGGGTGAAGGGGATCGGAGGCGACAAGGCCCCCGTTCCTCTT
CTAGATACGGAGATGTGA
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