EsuBft107_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft107_9a-0001
Unique NameEsuBft107_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_17contigScaffold_17:136534..140444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LMG3
ProteomeIdEsuBft107_9
Protein domainsPTHR23056
Protein domainsIPR002048
Protein domainsCoil
Protein domainsIPR018247
Protein domainsIPR011992
Protein domainsSSF47473
Ownerapollo_admin@sb-roscoff.fr
Notecalcineurin b-like protein 4 os:arabidopsis thaliana gn:cbl4 pe:1 sv:3 [Automatic annotation]
Nb exon8
Max annot lvl2759|Eukaryota
Length900
Hectar predicted targeting categoryother localisation
Evalue1.83e-120
EggNOG OGsCOG5126@1|root,KOG0034@2759|Eukaryota
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-05_002650.1
Date last modified2016-06-13
Date creation2016-06-13
KEGG rclassRC00002,RC00017
KEGG koko:K04718,ko:K06268
KEGG ReactionR01926,R02976
KEGG Pathwayko00600,ko01100,ko04010,ko04020,ko04022,ko04071,ko04072,ko04114,ko04218,ko04310,ko04360,ko04370,ko04371,ko04380,ko04650,ko04658,ko04659,ko04660,ko04662,ko04666,ko04720,ko04724,ko04921,ko04922,ko04924,ko05010,ko05014,ko05031,ko05152,ko05166,ko05167,map00600,map01100,map04010,map04020,map04022,map04071,map04072,map04114,map04218,map04310,map04360,map04370,map04371,map04380,map04650,map04658,map04659,map04660,map04662,map04666,map04720,map04724,map04921,map04922,map04924,map05010,map05014,map05031,map05152,map05166,map05167
KEGG ModuleM00100
EC2.7.1.91
Descriptioncalcium ion binding
COG categoryDTZ
BRITEko00000,ko00001,ko00002,ko01000,ko01009
Cross References
External references for this mRNA
DatabaseAccession
GO0050896
GO0003824
GO0005509
GO0044464
GO0016301
GO0065007
GO0044238
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft107_9aEsuBft107_9aEctocarpus subulatus male Bft15bgeneScaffold_17 136534..140444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft107_9a-0001EsuBft107_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_17 136534..140261 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft107_9a-0001-exonagat-exon-36113Ectocarpus subulatus male Bft15bexonScaffold_17 136534..136565 -
EsuBft107_9a-0001-exonagat-exon-36108Ectocarpus subulatus male Bft15bexonScaffold_17 136702..136810 -
EsuBft107_9a-0001-exonagat-exon-36111Ectocarpus subulatus male Bft15bexonScaffold_17 137519..137617 -
EsuBft107_9a-0001-exonagat-exon-36112Ectocarpus subulatus male Bft15bexonScaffold_17 137804..137899 -
EsuBft107_9a-0001-exonagat-exon-36109Ectocarpus subulatus male Bft15bexonScaffold_17 138152..138281 -
EsuBft107_9a-0001-exonagat-exon-36114Ectocarpus subulatus male Bft15bexonScaffold_17 138978..139100 -
EsuBft107_9a-0001-exonEsuBft107_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_17 139980..140034 -
EsuBft107_9a-0001-exonagat-exon-36110Ectocarpus subulatus male Bft15bexonScaffold_17 140189..140444 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft107_9a-0001-cdsEsuBft107_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_17 136534..136565 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft107_9a-0001-exonagat-five_prime_utr-482Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_17 140262..140444 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft107_9a-0001 ID=EsuBft107_9a-0001|Name=EsuBft107_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=900bp|location=Sequence derived from alignment at Scaffold_17:136534..140444- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATATCAACTCTAATGCTCTAACGTAGTGCGAGAGATCCTGGAGGGCATTC
CGGCTGGATTTTAAGGATTCCCGCCCTCCTCACTAAGCAAGAGAGGCGCG
CACGCACGTACGCCGTTGTTGTGGAGGAGCTTTGTGGCGCAGGAGCAGTT
TGGGGCTCTATATGATGACCCACTACATACGACATGGGCAATAAAATCCC
CGGACCCCCACCACCTTCAGGAGAGAGAGTCGCACGGTGCAAGGAGCTCT
TCATGCTCACGAACGAGAACATCGAAGCCTTGTGGGAGGTCTTCAAGCAA
TTTGATCTCAAACGCGAAGGCTTAATAAGCAGACAAGCTTTTTTCGAGGG
CATCATCCAGGAGGAAAGGAACGAGTTTGGAAACGCGATATTTACGCTCG
TCGACCCTGAAGACGAAGAGACTTTAGAATTTGGAGAGTTTGTGCAGGCA
GTTTGCACGTTTTGCTGTTTTTGCGTGACGGACATGCTCAAGTTTTGCTT
CATGGTGTACGACAAGGACCGATCCGGACTCATGGAAATCGAAGAGCTTC
ATCATTTTATCAAGGTGCTTCACAGTTCCAACGTGACAAACAACATCCAG
GGTGCCATGTCACACTTGCAGCTGGACGAGCATGGCAGACTTCCATTCGA
TAGTTTTAAGATCATGAACAAGAACTTTCCTCAAGTTCTCTATCCCGTAT
TTCGGCTGCAGCAATCGACACAACGAGCTATCCTGGGGAACAAATGGTGG
AAGAACAAGGTGAACGAGCTTGGCTTTTGGCGAGAGAACAGGGAGCACAT
GGAGGAAATGGAAAGGATAAAGGAGACCAAAAGAAAGGAAAGACAGCGGA
ACGCACAGATAAGAAAAGGCACGATCCCTATCCGTTCTTTCGATGTGTGA
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protein sequence of EsuBft107_9a-0001

>EsuBft107_9 ID=EsuBft107_9|Name=EsuBft107_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=238bp
MGNKIPGPPPPSGERVARCKELFMLTNENIEALWEVFKQFDLKREGLISR
QAFFEGIIQEERNEFGNAIFTLVDPEDEETLEFGEFVQAVCTFCCFCVTD
MLKFCFMVYDKDRSGLMEIEELHHFIKVLHSSNVTNNIQGAMSHLQLDEH
GRLPFDSFKIMNKNFPQVLYPVFRLQQSTQRAILGNKWWKNKVNELGFWR
ENREHMEEMERIKETKRKERQRNAQIRKGTIPIRSFDV
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mRNA from alignment at Scaffold_17:136534..140444-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft107_9a-0001 ID=EsuBft107_9a-0001|Name=EsuBft107_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3911bp|location=Sequence derived from alignment at Scaffold_17:136534..140444- (Ectocarpus subulatus male Bft15b)
ATATCAACTCTAATGCTCTAACGTAGTGCGAGAGATCCTGGAGGGCATTC
CGGCTGGATTTTAAGGATTCCCGCCCTCCTCACTAAGCAAGAGAGGCGCG
CACGCACGTACGCCGTTGTTGTGGAGGAGCTTTGTGGCGCAGGAGCAGTT
TGGGGCTCTATATGATGACCCACTACATACGACATGGGCAATAAAATCCC
CGGACCCCCACCACCTTCAGGAGAGAGAGTCGCACGGTGCAAGGAGCTCT
TCATGCGTGAGCCTTGTTCGATTTGCATGTGGTGACATATCTTAGTATTG
ATTACATGTAGCGTGACATAGAAAGTCGTATGCGTATGCATTTATTTGAA
TTGAGGAATGAAGCACGGCGGGCTTTGTTGACATGCAGCGCTGGTTCCTC
TCTCCCGCAGTCACGAACGAGAACATCGAAGCCTTGTGGGAGGTCTTCAA
GCAATTTGATCTCAAGTGAGTGTGGAAATTGTGGCTCTCTTGGTATCTAG
GCTATGTACAGTGCAAACATGCTCAGCCAGACAGCAGCCCCCTTCGCGGG
GTCGAGCACGGACAGACAGACCAGCAGGTAGGTGCTGCAGTGATCATCGC
GTGCTACACATTCCAAGCATGGACAACTTGATGGGGCCGCTGTGACTCAG
TAACCAGTCCATCTATTGTTGCTGTAGCGCGGGTTTGATACAGCTGTACA
CCGCGAGCAGGTCCATACAAAAGAGGTGCCCTCTATGTACATCAACCAGG
TCCACCGCGCATTGCAAATAGTTGACCAAGTGATTTCGACCCAAGGGCGC
CGTAGCCGATAAGGCTATTGATTTCGGGTATGCATTTCCTCCGAACCGCA
TTTCACCGCACGTAGGCTCGTACTGGGCAGAGACCAGAAAAGTTGTTTGT
GTGAAGACAACAACGACGACAAACACAGAAAACAAACGGCAGGCAGACGT
ACTGCTGTATTGCTGTTTGGAGGTAGCCATCCATGTGATGGTGTGTTACC
ATGGATATTTGACGTTTGTTGTCCGCCCATCATTGTCATGTGTTACGACG
TCATGGTGGGATGCAAGTCATTCTGAATCTTGTGCTCTTCTTTTTCAGTG
CGCGATTAGCTCTTTGCTGCAATTGAGCTGGTCTTGTGTGTGTTGGATCC
TGGACTCTATATGCAAGACGATCAGAGAGCTAAACAAGAGAGAGCACAGG
AAAGCAGCAAGGTTCCACCTAGCCCCGGAAAGAGATAATACAAGTGGAGA
AGATGAAATTTCCTTGTATTGCAGTCCACAGCTATGTAGGCTACAATCTC
TACACGTATGAAATCTATCTTCTGTTGTTTTCGTGGTGAATCAGACGCGA
AGGCTTAATAAGCAGACAAGCTTTTTTCGAGGGCATCATCCAGGAGGAAA
GGAACGAGTTTGGAAACGCGATATTTACGCTCGTCGACCCTGAAGACGAA
GAGACTTTAGAATTTGGGTAAGTCGGTGTGTGTGTTGACCGTCGTTTGTT
TCATGCTTCACTTCTTCCATGAAACGTATGATGTACTAGCATAGACCAGG
TATCTGGACTAGACTGCCCTTTTGAGAGATTATTGAAAGTTTCAAGTGCT
ACAAATACTGCTGCTGCTCAAGAATACCGAAAATCCGATCGCACGGAATA
ATGACGCGTACATAATGCAGCTACATCTTTTGGGGGCACGCACAGAACGT
CATTCTCAGGGCGCATATGTGTGTCCCTGGTGAAACAACGCTGAAGTACA
CAATTGGCCGGGTTGAAGCCCGCAGTTGTCCGATCAGCGCAGCATGTAGC
CTCCTCGACACACTCGAACAGAAACCCAACCTTCGGTGGTGGCAATATGT
TGCGGAAAGGGCGCAGTGACAAAAACACAAGACCAAACACAAAAAGCTCT
GGATAATATTTCCAAGAAGTTGCGAACCCCACAGTGGTCGTCCGATTTAT
TTTGGTAGCGGTTTCGCAGTGAAGCAATCGAGAGGTGGTTGTTTTTGAAA
CAAATAATGGTGGTTGTTTCAGCAAGCACAACGTTCTGGCCACGACTACC
ATTCGAACTGCCTTCCTTTCGTTCGTGACAGACTGCTGTGACTTGCTTAC
ACTTCACAACCGCTCTTGTGCCTTGATATTGTTCGCCTACCTTTCGGGTG
GGACATGACGCAGAGAGTTTGTGCAGGCAGTTTGCACGTTTTGCTGTTTT
TGCGTGACGGACATGCTCAAGTTTTGCTTCATGGTGTACGACAAGGACCG
ATCCGGACTCATGGAAATCGAAGAGCTTCATCATTTTATCAAGGTCAAGT
GTGAATGTACCCTAGTCAGTGACATGCTTGCACTTGCTAATGAGAAGACC
GCTTCTGCAACAGTCTGCCAGAATTTATGCATGAGCGTGTGGGAGGGGCT
TGCTCTATCGTCTTGCTCTATTGAGCAGCCTTGTGTAGGTGTCCAATCAC
TAATACTTGGTACCAGATAAAAACAAGATGAACACCGGCACAACGCATTT
GGGTGACATTACGGTATGCTCTACTGATTGTCATTTGCTCGCCAGGTGCT
TCACAGTTCCAACGTGACAAACAACATCCAGGGTGCCATGTCACACTTGC
AGCTGGACGAGCATGGCAGACTTCCATTCGATAGTTTTAAGGTGTGTCGT
TGGTGCGTCAATGTCAATCGTCAATGTCAATCAAAATGAGTTTCGAAACC
CAACACGTTTTTTCGTGTGCCCCATCCCCCCCCCGCCCCTCCCTTCAGTG
AGCCACACTTGCACCGTACTTTGCGCGAGTCTCCACCTGCAGTTTCATTC
GTTCATTTCCTCTTCTCCCTCACTCAGATCATGAACAAGAACTTTCCTCA
AGTTCTCTATCCCGTATTTCGGCTGCAGCAATCGACACAACGAGCTATCC
TGGGGAACAAATGGTGGAAGAACAAGGTGAGACTCGGGGCTGCCTGGCGT
TTTGGCATCAAAAATCCACGTAAGCAGTGCGAAGAAATTACATGTTACAG
AATTTTCACGCGACTCAGAGGGTGGTATGGGCGAGGTACTCATCGAGTCT
GGTGTTTAACAAAATCCAATCCTCCACAACAGCAGTTGACACTTCCCACG
TGCGTGTGGTACAGATGCGCACCTAGAGCAGGAACAAGATATAAAGCGCC
CACACCGGCAGGTAGAAATGGGAATTTCTGCTTCGACGCCGAATCGGTGA
TATCTGGTAGTGTGGTAATCCTCAGGATGAAGTTCAGTTTCCACTCTCCT
CGGGATGATGTTTGTGTATGCTTTTCCCAGTAATCGTGTCCACCGTGGGT
TGTAAGGAGACGAAATGCTGCACATTATAGATCAGCTAGAAACTGTTTAT
GTCAACCGCAATGTTCCCAACACTGCTGTATGTCTGCGTCCAGAAGACTA
GAGAACTAGCAACCGTGCCCATCAACTATGAAACTACACAGGGGGCTTGG
TTTGCGCTCGGTGTTGTCTGAGTAGTCGACAACAATCCGGTGATTTCGTA
GAACTCGCGGTCTGATACTGGAATCGCCCCAACCTTCGTTTTCGCGACAT
GTAGGCTGTGCCCTTTGTCATGAGCGTTTCAAAGACGCCACGATCAACAA
GCCGACCAAACATAACAACTGTGAACGCCGACAGGTGAACGAGCTTGGCT
TTTGGCGAGAGAACAGGGAGCACATGGAGGAAATGGAAAGGATAAAGGAG
ACCAAAAGAAAGGAAAGACAGCGGAACGCACAGATAAGAAAAGGTAAGTT
TCATGCATCCTTCCCTGTCCCTGAGCCATCCACTGCATCCCCTCGCCCAC
CGCTTCTCAGCTACGATAGATGAAGCACACCTTTCAAAACACATTCTATT
GTAATGGTAATCAAAAACTTACATGACAGGCACGATCCCTATCCGTTCTT
TCGATGTGTGA
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Coding sequence (CDS) from alignment at Scaffold_17:136534..140444-

>EsuBft107_9a-0001 ID=EsuBft107_9a-0001|Name=EsuBft107_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=717bp|location=Sequence derived from alignment at Scaffold_17:136534..140444- (Ectocarpus subulatus male Bft15b)
ATGGGCAATAAAATCCCCGGACCCCCACCACCTTCAGGAGAGAGAGTCGC
ACGGTGCAAGGAGCTCTTCATGCTCACGAACGAGAACATCGAAGCCTTGT
GGGAGGTCTTCAAGCAATTTGATCTCAAACGCGAAGGCTTAATAAGCAGA
CAAGCTTTTTTCGAGGGCATCATCCAGGAGGAAAGGAACGAGTTTGGAAA
CGCGATATTTACGCTCGTCGACCCTGAAGACGAAGAGACTTTAGAATTTG
GAGAGTTTGTGCAGGCAGTTTGCACGTTTTGCTGTTTTTGCGTGACGGAC
ATGCTCAAGTTTTGCTTCATGGTGTACGACAAGGACCGATCCGGACTCAT
GGAAATCGAAGAGCTTCATCATTTTATCAAGGTGCTTCACAGTTCCAACG
TGACAAACAACATCCAGGGTGCCATGTCACACTTGCAGCTGGACGAGCAT
GGCAGACTTCCATTCGATAGTTTTAAGATCATGAACAAGAACTTTCCTCA
AGTTCTCTATCCCGTATTTCGGCTGCAGCAATCGACACAACGAGCTATCC
TGGGGAACAAATGGTGGAAGAACAAGGTGAACGAGCTTGGCTTTTGGCGA
GAGAACAGGGAGCACATGGAGGAAATGGAAAGGATAAAGGAGACCAAAAG
AAAGGAAAGACAGCGGAACGCACAGATAAGAAAAGGCACGATCCCTATCC
GTTCTTTCGATGTGTGA
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