EsuBft107_20a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft107_20a-0001
Unique Name	EsuBft107_20a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_17	contig	Scaffold_17:262247..269205 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LMH2
ProteomeId	EsuBft107_20
Protein domains	IPR004910
Protein domains	PTHR13847
Owner	apollo_admin@sb-roscoff.fr
Note	protein yippee-like at4g27745 os:arabidopsis thaliana gn:at4g27745 pe:3 sv:2 [Automatic annotation]
Nb exon	6
Max annot lvl	2759\|Eukaryota
Length	1222
Hectar predicted targeting category	other localisation
Evalue	1.64e-83
EggNOG OGs	KOG3399@1\|root,KOG3399@2759\|Eukaryota
Ec32 ortholog description	Yippee/Mis18
Ec32 ortholog	Ec-05_002760.1
Date last modified	2016-06-13
Date creation	2016-06-13
Description	positive regulation of cellular senescence
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0005515
GO	0008152

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft107_20a	EsuBft107_20a	Ectocarpus subulatus male Bft15b	gene	Scaffold_17 262247..269205 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft107_20a-0001	EsuBft107_20	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_17 262333..268417 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft107_20a-0001-exon	agat-exon-36175	Ectocarpus subulatus male Bft15b	exon	Scaffold_17 262247..262371 +
EsuBft107_20a-0001-exon	EsuBft107_20a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_17 265869..265951 +
EsuBft107_20a-0001-exon	agat-exon-36176	Ectocarpus subulatus male Bft15b	exon	Scaffold_17 266818..266885 +
EsuBft107_20a-0001-exon	agat-exon-36177	Ectocarpus subulatus male Bft15b	exon	Scaffold_17 267466..267527 +
EsuBft107_20a-0001-exon	agat-exon-36173	Ectocarpus subulatus male Bft15b	exon	Scaffold_17 268029..268061 +
EsuBft107_20a-0001-exon	agat-exon-36174	Ectocarpus subulatus male Bft15b	exon	Scaffold_17 268355..269205 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft107_20a-0001-exon	agat-five_prime_utr-470	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_17 262247..262332 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft107_20a-0001-cds	EsuBft107_20a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_17 262333..262371 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft107_20a-0001-exon	agat-three_prime_utr-744	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_17 268418..269205 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_17:262247..269205+
coding sequence from alignment at Scaffold_17:262247..269205+

spliced messenger RNA

>EsuBft107_20a-0001 ID=EsuBft107_20a-0001|Name=EsuBft107_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1222bp|location=Sequence derived from alignment at Scaffold_17:262247..269205+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGTAGTCCAGTTCCTCTCAGTTCAGTGGAGAACAGCACCCACAACAAGCA
CCAACGAGAGCGAGAGCTTTCAATCTGGCAAACGACATGCCGCGGGTGTT
GACGCGCTTCATCGAGGAACCACAAGTGTTCGCCTGCGCGAATTGCAAGA
CGCACCTGTCTACCGAGGGAAATATTGAATCGAAGGACTTCACTACACAA
AACGGGAGGGGTTTTCTGATCAACAAATTGATCAACGTCACCAACGGTCC
TTCCGCTGACAGAAGCTTGAGAACAGGCATGCATGTCTGCCAGGATGTCT
ACTGTGTGACCTGCGACACCAACGTGGGATGGAAATATATCAAGGCCTTC
AACCAGACCGAGAGGTATAAGGTTGGGAACTTTGTGCTGGACGCTGTGAA
GGTTATAAACTACCATTGGGAATCCGTCGACTAAGGCGGCATACCTCTCC
GTATTGTCGATAACTCGAGGGGGATAGCGACCGTATCCGATGAGAAAATG
TGTTGGTGCTGCGGTAGCTGCGCAGGAGCGGTTTAGTTCTATTAGTGTAA
CCTATGGGAATTTGATGACCGATCCACGCGGAAACGGCACATGTGCATAA
TGTGAACAAGATTCGACAGCTGAGTAAATTACCGGTGGATTTGGGGGAGG
TTTACTTATGAATTATCAACGATGTGAGCGTCAAGCGCGTGTCGTTTGTT
CAAATTAGTGCGTTGTTTCTGGACCTTGACACCCACCTAGCGACGAGCTC
TACCTTCCTTCATTTGGCCGTGGAGAGCCATACATGCTGCTTAGAGTGGA
CATCTCTTGGCTTCCCCTGTAAATGCGAATGTTCGTCGAACGTGCCGAAA
GTCTGATTGACGCAACAGGTGCGTTCTTCGTATGCATACTTCCAAACAGA
TGAAAGTTTAAGTTTCAATGCCTTTTGCCGTCCGTGTAGCAGCTTGTTGA
AATCGAAAAATTGTGTTGCGATCGGTTGCTCCATTGGATTTGAAGCCATC
TGCCCTCGTACAGGTCATCATATGTTCGCGCCACGCTGAACAGGCGATAT
CGGGTTTGCGTTCAGATACATATGAGAGGGGCAGAGTGCAACGACGAAAG
TTGCGACGTTGAAAAAACAAGGCGGGTTCACTGCACGCCAATACGATGCT
ACCCTCAGCTGTTGAACAAGTACAGCGGTCCCGCGAAATGTGCGATGGCA
TGTTTCGCAGCATCAGTGACCA

protein sequence of EsuBft107_20a-0001

>EsuBft107_20 ID=EsuBft107_20|Name=EsuBft107_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=115bp
MPRVLTRFIEEPQVFACANCKTHLSTEGNIESKDFTTQNGRGFLINKLIN
VTNGPSADRSLRTGMHVCQDVYCVTCDTNVGWKYIKAFNQTERYKVGNFV
LDAVKVINYHWESVD

mRNA from alignment at Scaffold_17:262247..269205+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft107_20a-0001 ID=EsuBft107_20a-0001|Name=EsuBft107_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6959bp|location=Sequence derived from alignment at Scaffold_17:262247..269205+ (Ectocarpus subulatus male Bft15b)
GGTAGTCCAGTTCCTCTCAGTTCAGTGGAGAACAGCACCCACAACAAGCA
CCAACGAGAGCGAGAGCTTTCAATCTGGCAAACGACATGCCGCGGGTGTT
GACGCGCTTCATCGAGGAACCACAAGTGAGTCGAGCTGGTAATTGTATCT
CCGTTGCTGTGCATTGAAATGGTGAACTTTCAAGTTGATGTTGGAAGGCG
TACACGGCGGTACATTCATACCATTACCACCAGGTACGTTTTGTGGTATG
AATATGCAGTAGTCTAGGTGGCTGAGAACGAGTTCAGAGTTTCCATCCAT
GCATTGCCAAGACTCCAACACATCCCGTTCGACTGTGCTTATATCTCGAA
TGGGCATGAGTGGAATCTTTCTGTGTTTGTATTTGTATTACCTGTTCAGA
ATGTAGACTAAATGCTGCATTTTGTAGGCTACCGTTTGGGTCTAGACTAC
TTGTACATCGATGATAGTAGTATTATAGTATGCATAGAGGAGTACATTTC
CACATATGCACCAATGGATGTCTCTCCACAGCGAGCGCCGGTAGGGACGT
ACATGACGAACACACCCGCAAGATTCAGTGCGAAACGACTAAAAAGGTCA
CTTGTGTAACTCGGTGTCATTAGCTTACGAGGGAGCACGTCACCGCCCAA
CCGGCACTAGTATTTCATGATGCCCCCCCGACTGCAAAGGCCGACTACTG
CTGTAGTCTACATGTACGAGGACTTTCTGTGGAAATGTTGTGGCTGCTGC
CTAAGGAATATTGTCCATAGGGGAGCTATCACTTCCGACGATCACCGCTG
TACAGTATTTGGTAGTCTTGCGCACTGCAGGTACTCTACAGGGTGGGTGG
CCGGTATTGAGAGGGTGTACTCTCTTGTCTCGTAAGTAGAAACAGTAGTC
TGATCAAGTTGTTGTAGCAGTATGCTCAGTAGGTTGGTGTGGTTTCATTC
ATGCATCCTCCGCGTACTTCGTCCCTCAACTAACAACAAAGCTGCTTTAG
CTCGGTGATTGGTGTATGTTGGGTGCATGGGCTTGTCATAATGACGGCAA
GTCACACAGCACTATGCCAGTTGTACAGTCTACGTGGTGCCCGCAGTTTT
TTTGGTGTGTACTCGTACTCACCAGCGTACGTAGTCGAGAGAAAAAAGAG
TCAAAATTGACCAATCATCATTATGATAGTCACCAGCGGTCTCCATGCCT
CAACAACATCATCCACGGCGGTGAGATTGAAATATTTTGATTTTTTCTAC
ATAGAACACAGCAGTAGCCGTGCATGACGTCATCGGTCGTCCAGGGATTT
TTGGGCAATCTGAAAAAAGCTCCTGTAAAAAAATTGGCCGATCAGACAAC
TGCGGGCAGCTTTCATCGCTCTCTATCTTGTAGGGGGCGGGAGAAATCGG
CCGGGCGCATACTCGATGCAGAGAGGGCCCGCTTGTCTATTTGATACAGG
GCAGCATGTGCACCTCTTGAGTTCGGTGCTGATTTGTCCTTCACCTGTAT
CCACGGATGGACGTGAATTTTATAAGATAAAACCGTACACAGATACCACC
GATATACCCTGAGTGACTCCACTAAAGCTCGCACACTTTGTACAACGATA
GGGAAACAAGTGCTGTGGTTATTTTTTTCTTCGGACAACAGCAATAGCTT
TGATATGTATCAGTAGGAGCTTTTGTATGTTCCCAGAAACAAACCAAGCT
CTTCGCTATCCATTGATACAGCAGTAGTCCGGGATGCTTTCGCGACGACT
CATTGAGTTGAACGACCTACCTTGCGTCTGCTGATCCTCAGGCAACACGT
GGTATCTTGTCCATCTCTTGTATCGGACTGACTGTGTTGGGGGGGTAAAG
GGTGAGCGGCGGATTGAATGCTTGGATAATGGTGTGGTGAGGACGCAGTG
CGTGCGAAAAACGTTGTTCCACATTATTTTACACCCTGAAATTTTCCAGA
CTTTCCCCCCACTCCTCCACGTTTTTCCGAGCTTCCATGTATCCTGATGG
CTTCGAAACATCTTGAAAGACGGCAATAAGTGTAGCGCAAGCGTTAGTAG
GCATGTAAAACTCCCCTGCACTTTGGGATACACGCAGATTTATCTCCCCG
TACACAAGTATACAGGAATCGCCGCCCACTACCCCAAGTGTTTTGTCCGG
AAAAAAGTACCTATACAAAAGTAAAGAGGAACCTGCACCTGGGATGGGAC
TCACAGAGGGATATTTGCATTCCATAAATGTTAACACGTTCTCCAGCAAC
GTGAAAACTATCATCACTACCGTTGAGACAGCAACACATTCCATCCTATT
ACCGAGGGGTGCAAGATATTGTATTGAAGTACTTGTATGCATACCTAATA
TTTTCGGTGTAGTATCCCGCAGTATACAACATTAGTGCGTTAACGTCTGC
CTCTGTAAGAGACACTAATGCCTCAACACGCTTTTGGAATTCCGTGATGA
CGATTTTCAGCCAAATAAGAGTTTTTTTAGGTAACGCTACGGTATCCCAA
GGTGTGGCAGGCAAACTGCCCAATAAACAATTTGAGGCGGCACTGGTTGA
CTGGAGTGCGTGAGGCATGGTACACGATAAGCCAGTGGGCCAGTTACGAG
GATTCGACTGACCTTGAACCTGATCAGGCATTCCCTGTTTTTTTTTGTGG
CTTAGCCCTCCTAGAACCCAGTCCCTCCGCAAAAAAATATGTCGCAATAT
ATTTGTCGAGGGGCTACAGTCCATCCAAAAATATGAGCTTGCCAGACAAA
GGGTGACTTGGCTTCAGTATCAAAATTGTTCCCAAACAACGTGGGGACAC
TTTTCATGCTGGAGCCAAGTGAGCAAAGTTCCAGTACCAGGGGACGTAGA
GTTAGTACGACCTAGGGGAAAAGGGGCTTGGGCGATGGTGTACAGTAAGT
CAGAGGCCGGGAAGAGGTATCACACAGCATATCACACTGCGTACCACCTC
AGCCAAGCATGATAGACCAATGGTTTTCACGTGCGTCTCACACAGTGGAG
CCTAGGGTGGCTACGGTGCGGTAAATACGCATTTGAGTGCTGTGTCCCCA
AATTGTCCCATTTGGGCTTCCAGTAATAGAAGGGTTAAAGGGTGTGAAAG
TCCTACTCCCCCCTACCCCCCCGTCTCTCCCCTTTGACCCAGTCTCCAGT
CACTTTATTACGCTCAACTTCGACTTGACGTACTCGCTCCTCACCCGGCT
TCTGGATACTGCAAGACATACACATGCATGAGATTTGTTGATCCCATCAC
ATGTTGCGCCTGCAGTTGTCGCGTTCAAAGGTTGATCCACATGAAACATG
AAACACAGAATGCACCTGCTTCCATATAGCGTGTTGGGGTACCGTACAGG
TATTTCGTACTCCGGCGGTACAGCAGTACAGCTTCAACAACGAGCGGTAT
GCATAAAACCAAAGTGCAGGCGGGTGGCAAGGCGTTGTTTGACGTTTGAG
TGCTCGATAGACGTCCTGCTGGTAAGATGTATCTACTGCTGCAGTTATAT
CATCGCAACTTTTCAGGCAGACAAGGCAGCTAGATCCATGGCCCTCCTAT
TGTCGAGTCCACGGGAATGCTACCTTCACAAATTCTTATCACGCATGTAC
ATACGTTCTGTTAAACTGCAAGGTGTTCGCCTGCGCGAATTGCAAGACGC
ACCTGTCTACCGAGGGAAATATTGAATCGAAGGACTTCACTACACAAAAC
GGGAGGTGCGTTCATGGGTGTGCCAGCGTGGGTGTTCAGTCATTTCGCTT
GGGCACGCAGTTGCTGGGGTCACCGCACTGCTTCCCTGCAAGCGTTGTGG
AAGTATCATGTCAGTGACGTGATGTGTACGAGGTGTCAACCGCGACTATT
AGTGCCGTTGTATATCGTCTGAGTCATGGATGTTTCGTGTGAATATGGAA
ATGATGTCCACCAAAACATCACTTTTCGAGAGTTATGGTCTCGTCACTCA
ACAGCTTCAATAGGGCATACTGTTCGGTACGGTATGATAGAAACGGCGAG
TGGCAACACGTCCGTGTAGAGATTTCCAAGAGGCCGTGCTCGTTGTGTTT
CCGTCGGTTCTGGCCATGTTATGTAGAGGTCCCTGCAGATTGTCTAGGGA
CACCGTGACTTCTAGAGCTTCATGGAGGGTACAAGGTAGACTGCATTGCG
GCCCACGTCGGGCTGGTGTTGATAATTGTAACGGGTGCCGTCGAGGTTGC
GTACACCAATCCCGTCTTGGATGTTCTCAATGAATCACACCCATTTCGAT
TGGGGGAGCACTGGTTCACACACTTTTTTTTATGATTCGCTCAAGTTCTT
GGTTTTGGGAATGGTACATATCGGTTGACTGTTGCTTTTCGCGGCAGACG
AGCCGGTGTGAGTGGGTTCTGTACGTTGCCCTCCAGATATCTCGATGTGA
GACGCATGAGATACAAGAAACCGACCGGAGCCCGTGGATTCATGTATGAG
AGGTATTGAAACTTTGATCGACCGTTCCGTGGGTACAGCAGGGTATTTGA
CCTCGGTAGTCTGGCTCCTGTCCTGTCTCGTCCTGTCCTGTCCTGCCCTG
CTCGTTCGTCTCACCGAGCAGGGGTTTTCTGATCAACAAATTGATCAACG
TCACCAACGGTCCTTCCGCTGACAGAAGCTTGAGAACAGGTACACATAGT
GTTGCCCCAAATATCCTTTGCACACTTATCGGCCCTTTCTATGTTATGGC
GTTTTACTCTCTTTGTCTCAGACTCGACGGATTCCGTGTACCAAGCAAAG
GCTTGGCCAACTTCTTGCTGCTGTTTTTTTTTTTTGTAGGGACGAGTAAA
TTCCCCCAGTCAAACAGAACACGCATAAATGATGCCAACGTTCTCTACCG
TATGGTGGATCTTAATATTTTGGTTTTGATATTCCTGCACTTCTTGTAAG
CATATGCTGGTTTGTTGTTGACTCTAGTCGGAGGCATGCCTGCTGTGTCA
ATTCGTTCTTACTGTTGCATGTCTCTACGGTGAACCGCAAGTATCAAGTA
TTTAACAGATCTTGGACGGTTTTGGCGGGGAGGGGGAGAGGGATCCTTCT
GGTGCACTCTGATAGGCTGGTCGGAGTGTTGTTCTGTCGAGAATGAGAGA
CAGCCCTCGCGGAAGGTGTGGACTGAGAGGAACGAATAGACGGGATATTC
GAAATGCTTTAGCTTGATGTTGAACCCGTTTGATCATGCTGCTTGTGTGC
GTGTGTTTCTGAGCGTCAGGCATGCATGTCTGCCAGGATGTCTACTGTGT
GACCTGCGACACCAACGTGGGATGGAAATATGTGAGGGCAAAATGCAGAG
ATGAGCGACCACAAAGAGTGGTCTTTAGATGCTTCACGACTGCGTTTCCA
GCTGAACAGCCCCCGAAATCCGGGGCGTGAAGCATGGTTTTCGTTACTTG
ATCAACGGTTCAAGAGGGAAGACGGAGCGCGCATGACTCGCGCCGCTGCG
AAGCTTGTCTGGTCTGATTTCTTGTATGGTAATGCGGAACTGTAATTTGT
GTCAGTGCATTCGCTTAAGAACTCGGTTCATTCGAACTCGGTTCCAGGAC
CTGGGCACCGACAACGTTTTTGTTTGACGTAAACGTATTCACACGAATAC
AATCAAATTGTCCCTCGAAGAATGCCATGCTACCCCGAGTACCATTGAAA
TACCCTCTTGCGTTTGTCCGTGATTTCGTGTGTAAGAAACCACCATAGTC
GGCTCACCCCGGATGCTATTGTCCTACCTAAGCCTAATGCACCAACCAAT
CCTCTTCGTTTCCCTTTGCCTGCAATCAAAAGATCAAGGCCTTCAACCAG
ACCGAGAGGTATAAGGTAAGACGCCTGATGGCAATGCGCCCCGAAACAAC
GCCGGTGCTTGGGGTCTTGTGACCGATTTTCGTTGAATTTGCGTGCTTGG
TAGTCAATCATCGAAACTTGTTTACTCCTAACGGCTACAAGTTTGGCCGC
CGGCAGACACCATGATGCGGACCATGCCAAATGGATGCCCAGGGCCCGCA
CGAAACTACAGCAACCAGCACTTATCGTTTCTTCGCATGGGCATATGACC
GTCACTTTTAACCATTTCCCCCGGTGCCCCTTGTTTATGTATTTCGTCTC
TCGTGAAGGTTGGGAACTTTGTGCTGGACGCTGTGAAGGTTATAAACTAC
CATTGGGAATCCGTCGACTAAGGCGGCATACCTCTCCGTATTGTCGATAA
CTCGAGGGGGATAGCGACCGTATCCGATGAGAAAATGTGTTGGTGCTGCG
GTAGCTGCGCAGGAGCGGTTTAGTTCTATTAGTGTAACCTATGGGAATTT
GATGACCGATCCACGCGGAAACGGCACATGTGCATAATGTGAACAAGATT
CGACAGCTGAGTAAATTACCGGTGGATTTGGGGGAGGTTTACTTATGAAT
TATCAACGATGTGAGCGTCAAGCGCGTGTCGTTTGTTCAAATTAGTGCGT
TGTTTCTGGACCTTGACACCCACCTAGCGACGAGCTCTACCTTCCTTCAT
TTGGCCGTGGAGAGCCATACATGCTGCTTAGAGTGGACATCTCTTGGCTT
CCCCTGTAAATGCGAATGTTCGTCGAACGTGCCGAAAGTCTGATTGACGC
AACAGGTGCGTTCTTCGTATGCATACTTCCAAACAGATGAAAGTTTAAGT
TTCAATGCCTTTTGCCGTCCGTGTAGCAGCTTGTTGAAATCGAAAAATTG
TGTTGCGATCGGTTGCTCCATTGGATTTGAAGCCATCTGCCCTCGTACAG
GTCATCATATGTTCGCGCCACGCTGAACAGGCGATATCGGGTTTGCGTTC
AGATACATATGAGAGGGGCAGAGTGCAACGACGAAAGTTGCGACGTTGAA
AAAACAAGGCGGGTTCACTGCACGCCAATACGATGCTACCCTCAGCTGTT
GAACAAGTACAGCGGTCCCGCGAAATGTGCGATGGCATGTTTCGCAGCAT
CAGTGACCA

Coding sequence (CDS) from alignment at Scaffold_17:262247..269205+

>EsuBft107_20a-0001 ID=EsuBft107_20a-0001|Name=EsuBft107_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=348bp|location=Sequence derived from alignment at Scaffold_17:262247..269205+ (Ectocarpus subulatus male Bft15b)
ATGCCGCGGGTGTTGACGCGCTTCATCGAGGAACCACAAGTGTTCGCCTG
CGCGAATTGCAAGACGCACCTGTCTACCGAGGGAAATATTGAATCGAAGG
ACTTCACTACACAAAACGGGAGGGGTTTTCTGATCAACAAATTGATCAAC
GTCACCAACGGTCCTTCCGCTGACAGAAGCTTGAGAACAGGCATGCATGT
CTGCCAGGATGTCTACTGTGTGACCTGCGACACCAACGTGGGATGGAAAT
ATATCAAGGCCTTCAACCAGACCGAGAGGTATAAGGTTGGGAACTTTGTG
CTGGACGCTGTGAAGGTTATAAACTACCATTGGGAATCCGTCGACTAA