EsuBft107_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft107_18a-0001
Unique NameEsuBft107_18a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_17contigScaffold_17:240091..243328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft107_18
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Length76
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft107_18aEsuBft107_18aEctocarpus subulatus male Bft15bgeneScaffold_17 240091..243328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft107_18a-0001EsuBft107_18Ectocarpus subulatus male Bft15bpolypeptideScaffold_17 240162..243328 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft107_18a-0001-exonagat-exon-36159Ectocarpus subulatus male Bft15bexonScaffold_17 240091..240172 -
EsuBft107_18a-0001-exonagat-exon-36157Ectocarpus subulatus male Bft15bexonScaffold_17 240393..240555 -
EsuBft107_18a-0001-exonagat-exon-36156Ectocarpus subulatus male Bft15bexonScaffold_17 240805..240885 -
EsuBft107_18a-0001-exonEsuBft107_18a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_17 241193..241522 -
EsuBft107_18a-0001-exonagat-exon-36158Ectocarpus subulatus male Bft15bexonScaffold_17 243224..243328 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft107_18a-0001-exonagat-three_prime_utr-742Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_17 240091..240161 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft107_18a-0001-cdsEsuBft107_18a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_17 240162..240172 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft107_18a-0001 ID=EsuBft107_18a-0001|Name=EsuBft107_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=761bp|location=Sequence derived from alignment at Scaffold_17:240091..243328- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACCGGCAGCAGCAGGGACTGCAGCTGGTACGAGCACTTCCAGTCC
TGAGTCAACGCCGAACGGCGGAGCTGACGTCCTACGGGCGGCACAGGCAG
AGCATGAGATGCGCACCACCCCTGCGTACATCTTGTTGGGGATGCCAGCG
GACCACATGAAGACCAAGCAGCTCGAACAACTACGGCTCACTGAATTCGA
TAAATACCGCCGGTTCGCTCAAAGATGGTTGCAGCGTAGAAACGACAAGA
GACAGCAACAGCAGCCGCAACAGCAGCAGTCCCAGCCGCAACAGCCGCAG
CCGCAGCACAATTGGGGCCTGCTGCATCAGCAGCAGCTACTCCACGGAGC
GAACCTTGGACTTGAACCAAATCAACCGCGTCACCATCCACAGTTACCAT
TCGGAGTTCACGCACACAATGGTGGTTCCGTGCAGGGTGGCCACGCGCTC
CAGGGAGGGATGATGAAAATGGCTCAGCGCCAGGCGCAGGCATATGCATT
GGCGCAGGGCATGCAGCCACCTGCTCTGTCGCCTCTGTCGCCTCCGATTG
CCCCACACCTACCTCCTCCGGCTGCCAGCGCCGCCGGCGAGGCCATCGAT
TTGACGGACGACGCCGCAGCACCGGCGGCAGCCTGCTCGGGCCCGTCGTC
AGCCGCGGTTGCGGCCAATGCTCAGGCAGCTGAGTATTGATCAACAGCAA
AGCTGGCATGCGCACCAAGCGTTCACGCAAAGGCAGCAGCAGCAGCAGCA
CAGCGCACAGC
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protein sequence of EsuBft107_18a-0001

>EsuBft107_18 ID=EsuBft107_18|Name=EsuBft107_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=229bp
MGPAAAGTAAGTSTSSPESTPNGGADVLRAAQAEHEMRTTPAYILLGMPA
DHMKTKQLEQLRLTEFDKYRRFAQRWLQRRNDKRQQQQPQQQQSQPQQPQ
PQHNWGLLHQQQLLHGANLGLEPNQPRHHPQLPFGVHAHNGGSVQGGHAL
QGGMMKMAQRQAQAYALAQGMQPPALSPLSPPIAPHLPPPAASAAGEAID
LTDDAAAPAAACSGPSSAAVAANAQAAEY
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mRNA from alignment at Scaffold_17:240091..243328-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft107_18a-0001 ID=EsuBft107_18a-0001|Name=EsuBft107_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3238bp|location=Sequence derived from alignment at Scaffold_17:240091..243328- (Ectocarpus subulatus male Bft15b)
ATGGGACCGGCAGCAGCAGGGACTGCAGCTGGTACGAGCACTTCCAGTCC
TGAGTCAACGCCGAACGGCGGAGCTGACGTCCTACGGGCGGCACAGGCAG
AGCATGTGAGATATGTAGTGCACTGAACGAGCTGATGTACTCGGTATCGT
TGCTATCTTGACCAGCCAGCTTGAGCGAGTGTCCTAAGCCGTTTAGTATC
GCGCACGGTAAGATTATCTGGAATACAGTATCGTGAAAAATTTCATGCGT
TACATATTCTCCCAGCCGATGATTTTTCCCCCCTCCCCCAACGTGGCCAA
TAAGGAAGAAAGCCGCCTAGAAGGCACCGCGGTTTCCAGCCAAGAAAATT
AGAGCACGATTCCTCCTTGGCATGCCTTGATTGTCTTGCTGCAACAACCG
GGCCGAAATTCATTTTATGCTCAGGTTGTCCAACATACCTTGCACATTTT
TTGCGACGAAGGGGTGAAAGAAAACAAGTATGCCGAATGGTACAGGTTTG
GGGCTCTCGGCAAGAGCGGTACCACTCGCGCCTCCAAATTCCCCGCAATA
ATTCGCTAGTTGGAGAATTTGGCGTTGACCTCAAAACCTGGCTGCACAGA
CCGTTACTGATGACAAAGACGACAAGGCTGACAGACCGCAGAAACGGGTG
CAAACTCGGTGCGTTGGCATGAGTTGCATTGGTGCTGGATGCCAGCAAAT
GACTTGAGCGGACATATGCATTGTGCGTGATGATCTGATGACGCTGAAAA
GGTAAGTTCAAAGCGCACGATCGTATATGAGTATCGGTGCCTCTCACCTT
GATGAATCTCATAAATCTGCAAAGGTAAAGGTGTTTTGTGAGTGGCTCTG
GATAGCACACGGGGATGGATATCTGCTTCCACTGGTCGGTGGCTGCGGGA
GATCGGCTGAACGGCATGCTGTCGCTCGCTGCTCGTAAGGTGTGGTTTTC
GCCGATTTTTTTCTCTCCTCCGCGGAAAAGTATCACAAGTACACAGGATG
TTGTCCGTTTTGAGGGGGCATGACTAATCAGCTCGACGGTATCAGACACG
AACCCGCTGTGATTCGGCGATCGAGGGGATATGAGCGCAGTTCAAATGTC
CGTTCTAAGGTCTTGAAGAGTTGTATCTGACGAAGGAGTGTTTGTTTCGT
AAACCTTTTTCTTGAGTGCGTATGTGTGGTGTCATCAATTCGGGGCACGT
TTTCCTTTTTTGTTGAGACCTTCCCTTCCCTCTTGTTTATCCCCGAGGTG
GTCGTTGTCGCAGAAACCTTTTTCTTTTCGGGTACGTACAGAGACACACC
GGGGGTTGTTTTTCCGGATATCCACCTGTATCCGACCCTCGTGTTGAGTC
TGTAACCCTTCCGGTACCCTACTCGATATTGCTGTGAGTTCTGGAAGACT
GCCAAACCCAACCTGGCACTTACGTGATCTTTATATACCACGTGGAACAT
GAACAAGGTGCCTGTAGAAATGCAATGAAAAATACCCCAAAAATAGGATA
AGTAATGACCGGGTATTCCCCTTGTTTTGCAAACTCCGAGGTGCGGGTTC
CCGCACGGTGTAGGTGTGTAAACATGCCCAAAATTTCGAAGGTGTGTATG
AAGTTCTGTACATCACATGCCCCAAGTCTTTGTGAGTTCTGTAACACGTC
CTTCCCAGACTTACAACCATGGCACAGAGGGCTCGGTAGTTGTATTTCAA
TACTTCAACAAGCCATGAAGTTCATCGTTGCTTCCGCGCTGTAATCGGGA
ACTGCACTCATTTCCGGTGCGCAATGCTATCCACCGAATGTGTTGCCTCG
TGCCAGGAGATGCGCACCACCCCTGCGTACATCTTGTTGGGGATGCCAGC
GGACCACATGAAGACCAAGCAGCTCGAACAACTACGGCTCACTGAATTCG
ATAAATACCGCCGGTTCGCTCAAAGATGGTTGCAGCGTAGAAACGACAAG
AGACAGCAACAGCAGCCGCAACAGCAGCAGTCCCAGCCGCAACAGCCGCA
GCCGCAGCACAATTGGGGCCTGCTGCATCAGCAGCAGCTACTCCACGGAG
CGAACCTTGGACTTGAACCAAATCAACCGCGTCACCATCCACAGTTACCA
TTCGGAGTTCACGCACACAATGGTGGTTCCGTGCAGGTGAGAAGCGCAAT
ATTGATATTTGATTTAACCTCGGCAGTTGTCGGCTGTTGATTTACCTTTT
GGTGTTACTCACCTTTCACCTACAGTCCTGTCGCCTTATGAGGTAGGAGG
TAGGAGTGACCGGCGATGACTGTGCTCCTACTCCCCCAGGCATACTTTCC
CGCGTGCACTACCCGGGGCGGTGAGGCTACATGCGAGGCTGCTGTATCCA
TATACGCTCTAGGTAAGGCTTGCGGCATGAAGAACGAGCTGCATGTCTTT
GTTTACACTCCCCGTGTCCTGTACTTGAAACACATGTTGCCAGGGTGGCC
ACGCGCTCCAGGGAGGGATGATGAAAATGGCTCAGCGCCAGGCGCAGGCA
TATGCATTGGCGCAGGGCATGCAGGTGATGGATGCATCATCGCCGATGCC
AGATGGTGTGGAATCGCAGACTGGTATACGACCCAAGCTGGAGACCTGCT
AGTTTTGTGCCCACGATCGCATCGATTTTTCTTGCGAAATCTCAATACTG
CATCTCGTACGGTCGCGAAATGACCAAAGCCTGTAGCAAGTCTCATGCCT
GGTCTATGGGTCCTTGCTCAAGCCGCAACCATGCCGTGTGGTCTTGTACC
CCCCGCCCTCCCCCCTCCGGCAGCCACCTGCTCTGTCGCCTCTGTCGCCT
CCGATTGCCCCACACCTACCTCCTCCGGCTGCCAGCGCCGCCGGCGAGGC
CATCGATTTGACGGACGACGCCGCAGCACCGGCGGCAGCCTGCTCGGGCC
CGTCGTCAGCCGCGGTTGCGGCCAATGCTCAGGCAGGTCGTTCAGCTTCT
CGTTGACCTTGAGAATCCCGGTATGACGCCGTTTGGAACGCCATGCCTTG
GCAGTCGAACTTGCTCTCTTTTCGTGTCATGGGGTCGTGATTTCAATCGT
GTTGCCTGTGATTCACTCGATACCCGCTCGCATTTAAGCATGCAGCTCAC
GGTGGAACGTTTTTCCTGTCTAATTCGGTTATCGATCGCTCGTCACACCT
CTGCAGCTGAGTATTGATCAACAGCAAAGCTGGCATGCGCACCAAGCGTT
CACGCAAAGGCAGCAGCAGCAGCAGCACAGCGCACAGC
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Coding sequence (CDS) from alignment at Scaffold_17:240091..243328-

>EsuBft107_18a-0001 ID=EsuBft107_18a-0001|Name=EsuBft107_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=690bp|location=Sequence derived from alignment at Scaffold_17:240091..243328- (Ectocarpus subulatus male Bft15b)
ATGGGACCGGCAGCAGCAGGGACTGCAGCTGGTACGAGCACTTCCAGTCC
TGAGTCAACGCCGAACGGCGGAGCTGACGTCCTACGGGCGGCACAGGCAG
AGCATGAGATGCGCACCACCCCTGCGTACATCTTGTTGGGGATGCCAGCG
GACCACATGAAGACCAAGCAGCTCGAACAACTACGGCTCACTGAATTCGA
TAAATACCGCCGGTTCGCTCAAAGATGGTTGCAGCGTAGAAACGACAAGA
GACAGCAACAGCAGCCGCAACAGCAGCAGTCCCAGCCGCAACAGCCGCAG
CCGCAGCACAATTGGGGCCTGCTGCATCAGCAGCAGCTACTCCACGGAGC
GAACCTTGGACTTGAACCAAATCAACCGCGTCACCATCCACAGTTACCAT
TCGGAGTTCACGCACACAATGGTGGTTCCGTGCAGGGTGGCCACGCGCTC
CAGGGAGGGATGATGAAAATGGCTCAGCGCCAGGCGCAGGCATATGCATT
GGCGCAGGGCATGCAGCCACCTGCTCTGTCGCCTCTGTCGCCTCCGATTG
CCCCACACCTACCTCCTCCGGCTGCCAGCGCCGCCGGCGAGGCCATCGAT
TTGACGGACGACGCCGCAGCACCGGCGGCAGCCTGCTCGGGCCCGTCGTC
AGCCGCGGTTGCGGCCAATGCTCAGGCAGCTGAGTATTGA
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