EsuBft107_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft107_16a-0001
Unique Name	EsuBft107_16a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_17	contig	Scaffold_17:210586..211755 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft107_16
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	100
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft107_16a	EsuBft107_16a	Ectocarpus subulatus male Bft15b	gene	Scaffold_17 210586..211755 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft107_16a-0001-exon	agat-exon-36133	Ectocarpus subulatus male Bft15b	exon	Scaffold_17 210586..210879 -
EsuBft107_16a-0001-exon	EsuBft107_16a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_17 211050..211755 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft107_16a-0001-exon	agat-three_prime_utr-739	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_17 210586..210879 -
EsuBft107_16a-0001-exon	agat-three_prime_utr-740	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_17 211050..211119 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft107_16a-0001-cds	EsuBft107_16a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_17 211120..211755 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft107_16a-0001	EsuBft107_16	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_17 211120..211755 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_17:210586..211755-
coding sequence from alignment at Scaffold_17:210586..211755-

spliced messenger RNA

>EsuBft107_16a-0001 ID=EsuBft107_16a-0001|Name=EsuBft107_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1000bp|location=Sequence derived from alignment at Scaffold_17:210586..211755- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCGTCAAACGTGTCGACTTCAAAGACTCTGACCATCACCTCTCG
ANACAAGGGGAAGGAGAAGTACCGCCTCGACTCCATCCTCATGCGTCAGA
CGACCCGGCGTTTCGTGCGTAATGTCTCCGTCAAACGTGTCGACTTCAAA
GACTCTGACCATCACCTCTCGATTACGACTGTCCGCCTCCCCCCCCGTGT
CGCACCCAACCGACGAGTGCGGGGGTACAGCGGAAGCAGCCGGATCCTTA
TCGACCTCGAGCGGTTGAGGAAGGACAAACACCTACGGGTCGTCTTCCAA
GGCGGGGCCTTCAGCCACCCTCCGCCCACGATGCTCAGGCCGCCAACGGG
AGAGATCATCGCCGAGCTGACGGCTACGGTGATGTCGGCCGCTGCCGAGA
CCGCGCGGCTGGCGTGGTGCGCACGAGGACAGAGAGGCTGGTACACGACC
GAAGCGCAGCAAGAGATTTCCGAAGCGTCTAAGGAGATTAAGGCGGCCCA
GCAGCAACTGCGTGGGGCCTCAAAATACAGCGCCTTCGAGGCGATCCTGA
AGGCGATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTGGAGA
GCACTGGAAACGTTCTTCGAGTGCTATGTACGGTAGCTCGAGAAGGAGAG
CCGCGAGGGGGATCAGGTGGGTTTCTACAGGCACCTGAAGATGATCGACG
TTGAAGGTGGGTTTCTACAGGCACCTGAAGATGATCGACGTTGAAGGTAT
GAGGTCGTTCACCTCTCAGAACATCAAAGACGAGGATGGCAAGGTTCTTC
GGGACCCCACGTTTATTCGCCCACGGTGGCCGCGGTGGTTCCACAAGCTT
CTCAACACCAAGTCGCCGACCATCGATCTGCATGCGGCTGACAAGGTCAA
GCGGTGGCCCACGTGCGTGCCACTCGAGGGCATTCCATCATTACTCGAGG
TTGAGGAAGCGGTACGGGAAATGGCCAACAGAAAGGCCGTCGGGCCGGAC

protein sequence of EsuBft107_16a-0001

>EsuBft107_16 ID=EsuBft107_16|Name=EsuBft107_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=211bp
MSPSNVSTSKTLTITSRXKGKEKYRLDSILMRQTTRRFVRNVSVKRVDFK
DSDHHLSITTVRLPPRVAPNRRVRGYSGSSRILIDLERLRKDKHLRVVFQ
GGAFSHPPPTMLRPPTGEIIAELTATVMSAAAETARLAWCARGQRGWYTT
EAQQEISEASKEIKAAQQQLRGASKYSAFEAILKAMLKAARKKRSIARWR
ALETFFECYVR

mRNA from alignment at Scaffold_17:210586..211755-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft107_16a-0001 ID=EsuBft107_16a-0001|Name=EsuBft107_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1170bp|location=Sequence derived from alignment at Scaffold_17:210586..211755- (Ectocarpus subulatus male Bft15b)
ATGTCTCCGTCAAACGTGTCGACTTCAAAGACTCTGACCATCACCTCTCG
ANACAAGGGGAAGGAGAAGTACCGCCTCGACTCCATCCTCATGCGTCAGA
CGACCCGGCGTTTCGTGCGTAATGTCTCCGTCAAACGTGTCGACTTCAAA
GACTCTGACCATCACCTCTCGATTACGACTGTCCGCCTCCCCCCCCGTGT
CGCACCCAACCGACGAGTGCGGGGGTACAGCGGAAGCAGCCGGATCCTTA
TCGACCTCGAGCGGTTGAGGAAGGACAAACACCTACGGGTCGTCTTCCAA
GGCGGGGCCTTCAGCCACCCTCCGCCCACGATGCTCAGGCCGCCAACGGG
AGAGATCATCGCCGAGCTGACGGCTACGGTGATGTCGGCCGCTGCCGAGA
CCGCGCGGCTGGCGTGGTGCGCACGAGGACAGAGAGGCTGGTACACGACC
GAAGCGCAGCAAGAGATTTCCGAAGCGTCTAAGGAGATTAAGGCGGCCCA
GCAGCAACTGCGTGGGGCCTCAAAATACAGCGCCTTCGAGGCGATCCTGA
AGGCGATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTGGAGA
GCACTGGAAACGTTCTTCGAGTGCTATGTACGGTAGCTCGAGAAGGAGAG
CCGCGAGGGGGATCAGGTGGGTTTCTACAGGCACCTGAAGATGATCGACG
TTGAAGGTATGAGGTCGTTCACCTCTCAGAACATCAAAGACGAGGATGGC
AAGGTTCTTCGGGACCCCACGTTTATTCGCCCACGGTGGCCGNGCATCGC
GAGGTGGAGAGCACTGGAAACGTTCTTCGAGTGCTATGTACGGTAGCTCG
AGAAGGAGAGCCGCGAGGGGGATCAGGTGGGTTTCTACAGGCACCTGAAG
ATGATCGACGTTGAAGGTATGAGGTCGTTCACCTCTCAGAACATCAAAGA
CGAGGATGGCAAGGTTCTTCGGGACCCCACGTTTATTCGCCCACGGTGGC
CGCGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCGACCATCGATCTG
CATGCGGCTGACAAGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGAGGG
CATTCCATCATTACTCGAGGTTGAGGAAGCGGTACGGGAAATGGCCAACA
GAAAGGCCGTCGGGCCGGAC

Coding sequence (CDS) from alignment at Scaffold_17:210586..211755-

>EsuBft107_16a-0001 ID=EsuBft107_16a-0001|Name=EsuBft107_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=636bp|location=Sequence derived from alignment at Scaffold_17:210586..211755- (Ectocarpus subulatus male Bft15b)
ATGTCTCCGTCAAACGTGTCGACTTCAAAGACTCTGACCATCACCTCTCG
ANACAAGGGGAAGGAGAAGTACCGCCTCGACTCCATCCTCATGCGTCAGA
CGACCCGGCGTTTCGTGCGTAATGTCTCCGTCAAACGTGTCGACTTCAAA
GACTCTGACCATCACCTCTCGATTACGACTGTCCGCCTCCCCCCCCGTGT
CGCACCCAACCGACGAGTGCGGGGGTACAGCGGAAGCAGCCGGATCCTTA
TCGACCTCGAGCGGTTGAGGAAGGACAAACACCTACGGGTCGTCTTCCAA
GGCGGGGCCTTCAGCCACCCTCCGCCCACGATGCTCAGGCCGCCAACGGG
AGAGATCATCGCCGAGCTGACGGCTACGGTGATGTCGGCCGCTGCCGAGA
CCGCGCGGCTGGCGTGGTGCGCACGAGGACAGAGAGGCTGGTACACGACC
GAAGCGCAGCAAGAGATTTCCGAAGCGTCTAAGGAGATTAAGGCGGCCCA
GCAGCAACTGCGTGGGGCCTCAAAATACAGCGCCTTCGAGGCGATCCTGA
AGGCGATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTGGAGA
GCACTGGAAACGTTCTTCGAGTGCTATGTACGGTAG