EsuBft107_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft107_13a-0001
Unique NameEsuBft107_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_17contigScaffold_17:178421..178881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog67593.Physo138264
ProteomeIdEsuBft107_13
Protein domainsIPR001584
Protein domainsIPR012337
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl4776|Peronosporales
Length46
Hectar predicted targeting categoryother localisation
Evalue6.93e-17
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QEWS@4776|Peronosporales
Date last modified2016-06-13
Date creation2016-06-13
Descriptiontransposition, RNA-mediated
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0015074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft107_13aEsuBft107_13aEctocarpus subulatus male Bft15bgeneScaffold_17 178421..178881 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft107_13a-0001-exonEsuBft107_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_17 178421..178881 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft107_13a-0001-exonagat-three_prime_utr-737Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_17 178421..178533 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft107_13a-0001-cdsEsuBft107_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_17 178534..178881 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft107_13a-0001EsuBft107_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_17 178534..178881 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft107_13a-0001 ID=EsuBft107_13a-0001|Name=EsuBft107_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=461bp|location=Sequence derived from alignment at Scaffold_17:178421..178881- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGAACACGTCACCGACTTCGTCAAGCACTGCCTCAACTGTATGGA
CTCCAAGGCGGGGGAAAAGGTGCCTCAACCGCTTGGGGAGACCGCCCATG
GCACGCGTCCCGGCGAAGTTGTTCTTTTTGACTACCTCTACGTGGGAGCG
AGTGGTCTGCTGGGAAAAGATAGCTTGGACGAGGAGGACGGGTTCAAATA
CATTTTGGTCATGATGGACGACATGTCCAACTGGGTTTGGCTGGAGCCCA
CGGGGGCATGCACCGCCCGCCTGACTTCGCAGCATCTCCTCACGTGGTGC
AAGACTTTGGGTGTTCCGGAGGTCTGGGTGAGTGATACCGCTTCCTAAAT
CAAAAAACACTTGATGGCTGCCCTTGAGATTGCAATCGGTGTCGATCGAA
AATTTTCCGTCGCCAACTCTCCCTGGTCTAACGGTACGTGAGAGCGAATG
ATGCGCGAGGT
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protein sequence of EsuBft107_13a-0001

>EsuBft107_13 ID=EsuBft107_13|Name=EsuBft107_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=115bp
MEEHVTDFVKHCLNCMDSKAGEKVPQPLGETAHGTRPGEVVLFDYLYVGA
SGLLGKDSLDEEDGFKYILVMMDDMSNWVWLEPTGACTARLTSQHLLTWC
KTLGVPEVWVSDTAS
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mRNA from alignment at Scaffold_17:178421..178881-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft107_13a-0001 ID=EsuBft107_13a-0001|Name=EsuBft107_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=461bp|location=Sequence derived from alignment at Scaffold_17:178421..178881- (Ectocarpus subulatus male Bft15b)
ATGGAAGAACACGTCACCGACTTCGTCAAGCACTGCCTCAACTGTATGGA
CTCCAAGGCGGGGGAAAAGGTGCCTCAACCGCTTGGGGAGACCGCCCATG
GCACGCGTCCCGGCGAAGTTGTTCTTTTTGACTACCTCTACGTGGGAGCG
AGTGGTCTGCTGGGAAAAGATAGCTTGGACGAGGAGGACGGGTTCAAATA
CATTTTGGTCATGATGGACGACATGTCCAACTGGGTTTGGCTGGAGCCCA
CGGGGGCATGCACCGCCCGCCTGACTTCGCAGCATCTCCTCACGTGGTGC
AAGACTTTGGGTGTTCCGGAGGTCTGGGTGAGTGATACCGCTTCCTAAAT
CAAAAAACACTTGATGGCTGCCCTTGAGATTGCAATCGGTGTCGATCGAA
AATTTTCCGTCGCCAACTCTCCCTGGTCTAACGGTACGTGAGAGCGAATG
ATGCGCGAGGT
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Coding sequence (CDS) from alignment at Scaffold_17:178421..178881-

>EsuBft107_13a-0001 ID=EsuBft107_13a-0001|Name=EsuBft107_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=348bp|location=Sequence derived from alignment at Scaffold_17:178421..178881- (Ectocarpus subulatus male Bft15b)
ATGGAAGAACACGTCACCGACTTCGTCAAGCACTGCCTCAACTGTATGGA
CTCCAAGGCGGGGGAAAAGGTGCCTCAACCGCTTGGGGAGACCGCCCATG
GCACGCGTCCCGGCGAAGTTGTTCTTTTTGACTACCTCTACGTGGGAGCG
AGTGGTCTGCTGGGAAAAGATAGCTTGGACGAGGAGGACGGGTTCAAATA
CATTTTGGTCATGATGGACGACATGTCCAACTGGGTTTGGCTGGAGCCCA
CGGGGGCATGCACCGCCCGCCTGACTTCGCAGCATCTCCTCACGTGGTGC
AAGACTTTGGGTGTTCCGGAGGTCTGGGTGAGTGATACCGCTTCCTAA
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