EsuBft107_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft107_10a-0001
Unique NameEsuBft107_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_17contigScaffold_17:142575..145702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog45157.CMB139CT
ProteomeIdEsuBft107_10
Protein domainsIPR019758
Protein domainsIPR028360
Protein domainsIPR019759
Protein domainsIPR019533
Protein domainsIPR000223
Protein domainsIPR015927
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsIPR019756
Protein domainsPTHR12383
Ownerapollo_admin@sb-roscoff.fr
Notesignal peptidase i os:phormidium laminosum gn:lepb pe:3 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length754
Hectar predicted targeting categoryother localisation
Evalue4.3e-32
EggNOG OGsCOG0681@1|root,KOG0171@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameTPP1
KEGG koko:K03100
KEGG Pathwayko02024,ko03060,map02024,map03060
GOsGO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006465,GO:0006508,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009657,GO:0009668,GO:0009987,GO:0010027,GO:0010467,GO:0016020,GO:0016043,GO:0016485,GO:0016787,GO:0019538,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034641,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0051604,GO:0055035,GO:0061024,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564
EC3.4.21.89
Descriptionserine-type peptidase activity
COG categoryU
BRITEko00000,ko00001,ko01000,ko01002
Cross References
External references for this mRNA
DatabaseAccession
GO0008236
GO0016021
GO0006508
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft107_10aEsuBft107_10aEctocarpus subulatus male Bft15bgeneScaffold_17 142575..145702 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft107_10a-0001EsuBft107_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_17 142603..145669 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft107_10a-0001-exonagat-exon-36118Ectocarpus subulatus male Bft15bexonScaffold_17 142575..142893 -
EsuBft107_10a-0001-exonEsuBft107_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_17 143168..143318 -
EsuBft107_10a-0001-exonagat-exon-36115Ectocarpus subulatus male Bft15bexonScaffold_17 143833..143927 -
EsuBft107_10a-0001-exonagat-exon-36117Ectocarpus subulatus male Bft15bexonScaffold_17 145138..145197 -
EsuBft107_10a-0001-exonagat-exon-36116Ectocarpus subulatus male Bft15bexonScaffold_17 145574..145702 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft107_10a-0001-exonagat-three_prime_utr-734Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_17 142575..142602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft107_10a-0001-cdsEsuBft107_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_17 142603..142893 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft107_10a-0001-exonagat-five_prime_utr-462Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_17 145670..145702 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft107_10a-0001 ID=EsuBft107_10a-0001|Name=EsuBft107_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=754bp|location=Sequence derived from alignment at Scaffold_17:142575..145702- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGGAGCGCTGATAAGGCGGATTAAAGCAATGTTAACTGCGTCATC
ATACAGTGAAGCTAGATCTTTGACGGCTGCGCTGGTGTTGTGTGCAGCAA
CGAGAATGTGTGTGGTCGACCAGAGGACGGTTATGTCCTGCTCTATGCAG
CCCGCGTTGGCATTTGGTGATCGGGTGCTGGTGGACAAGGCATCTATAAT
TTTGGGGAAGCTACCTGGTCGACCACCGGGTTTGGGTCTACGCCGTGGCG
ATATCGTGATCTTCTCACCGCCAGAAGCCTCCAGAAATATGTACGCTGAG
CTCCTTCGATTAGCAAGTGGGGCAACGACCGCCACACCAAACCCAGTCGG
GGACAGAAGAAAAGGACACATTCTGTCGCTGACACGGTGCGAGCGTAGGC
GGAGCCCGCTAAACTCATCGTTGGACTTTACAAAGCGTGTGGTGGCCGTA
GCAGGAGACCATGTTGCTGTCAGAAGAGGCGTGCTCTACGTGAATGAGAG
TCCAGCGGACGAACGTCAACGCTCCGCGCGGGCCAGCTATTCTTTTGGGC
CAACCGTGGTGCCGAAGGACCACATCATTGTGCTTGGAGACAATCGAGAT
GCGAGTTTTGATTCTCACGTGTGGGGCCCACTCCCGGTTCGGAACGTGAT
AGGCTGCGCCAGGGCGCGTTATTGGCCAGTGAACCGAGCGGCTTGGCTCA
AGAGAGGTGCTTGCCTTGATCGATGATGGCTCTTCCTCAAGGACTGGTAC
ACAC
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protein sequence of EsuBft107_10a-0001

>EsuBft107_10 ID=EsuBft107_10|Name=EsuBft107_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=230bp
MLTASSYSEARSLTAALVLCAATRMCVVDQRTVMSCSMQPALAFGDRVLV
DKASIILGKLPGRPPGLGLRRGDIVIFSPPEASRNMYAELLRLASGATTA
TPNPVGDRRKGHILSLTRCERRRSPLNSSLDFTKRVVAVAGDHVAVRRGV
LYVNESPADERQRSARASYSFGPTVVPKDHIIVLGDNRDASFDSHVWGPL
PVRNVIGCARARYWPVNRAAWLKRGACLDR
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mRNA from alignment at Scaffold_17:142575..145702-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft107_10a-0001 ID=EsuBft107_10a-0001|Name=EsuBft107_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3128bp|location=Sequence derived from alignment at Scaffold_17:142575..145702- (Ectocarpus subulatus male Bft15b)
ATGGTGGGAGCGCTGATAAGGCGGATTAAAGCAATGTTAACTGCGTCATC
ATACAGTGAAGCTAGATCTTTGACGGCTGCGCTGGTGTTGTGTGCAGCAA
CGAGAATGTGTGTGGTCGACCAGAGGACGGTGAGCGGCAGCTGTTTCACT
GGAAAGAACAGACCTTCTGTTGTGTGTCCTAGATGGACGCACAAGGGTTC
AAATACTTGTAGAATACCAAGTATTGTGTTTGGTAAGCGCTTTTGTGCTT
GGCTCAATGATAATCGTGCTCGTGTAGTGCCAACGTCACTTCTTTGTGTG
AACTTTGTAGCAGTTCACACCAATCTCAGGTAGCCGTGGACTGCCTTGTA
CATTGCAAATTCCGGAATTTCCAGTTGCGAGGTTGGCACGAAGTGCCATT
GATCGCACGGCGAACGTACCGTTCGCTTAGCTCAACCGGATAGCTAGATT
GTTCGTCGACGTTCTCCAAACATCACACACCGTCCGTATTTTTTGTTTCC
GGCAGGTTATGTCCTGCTCTATGCAGCCCGCGTTGGCATTTGGTGATCGG
GTGCTGGTGGACAAGGTGCGCGCCCGCGTGTGAGAGTACGTGAGTAGCAT
GAGCAAAAACTGTATCATGCCTTGTTTCAACATGCGTGTTGAGTGCTTGT
TACTCGTCTTGTAGCTGTTCTGTCCAAGAGCATCACACAAGTGCAGTGAA
GCTGCGGAGGGTTGTACAAAACCTGCCTATCACGAGATAGAAAAACTCTG
CTTGCTGTTGCTGCCGTTCATGCTGCCGCCGCCCTTTTTTTTTGCTTCGC
TGTGCTCCATTCCACACAAAGGACTGATCTCCATTTGATACAAACTATGT
AACTGCTATCACCCTCCTACCTGCCAGACTATTATCCCACTCCCCTCGAA
TGCGTTTCACCTGTTCACACTCATCACATAAGGTGATCAATATCACATCA
TAGATTTCAAAATGAGCGGGAAACAGCAGCTCGAACCTGCAACTCCTCTG
TTATGTTATGTTAAAAAAATTAAGCTCCTATTTAGTCTGTGTAGATTCAA
ATAGGTTCAAAATAGTAAATAAATCAGCACGATGTCAAAAAACGACACTG
CGCCGTGTTCCCTGTGAAAACCACATTTTTCGCACACGACCATCCTCCCC
GATATTTCTGTCGTTGACCCAGTAGAGAACTACAGGGGATGTGTTACAGA
ATGTATCCACCTATACAGATGCTTTTTTCTTAGCACCGGCTGGCATCACT
GATTCCATTTAGTGTGTAGGCTTAAACAAACTCAAAATGAGCCAAGTTTC
AAAAGGGGGCCAGCAGACTGAACACGGCCACACGAGAGACCTCAAATAAA
CACCGCGACAAACTGTACTTGAGCAGACAAGCTGGTTGTTTCGGCAGGAT
AGCCTACACGTGAGTCAGCGCTGTCGTAGTACAAGCATATATGCAGATGA
CTATTCGGGCACTTAGCAAGGGGTGTTAAGGACAACGAACGAGAGTAGGT
CGCGAAACATGCCCCGAAAGACTCACCTAAGGGGTTTTGTCAATGACGAA
AGAAAATGGCAAATATAGTCTCTACCTTACGCTCACTCTACAGAACCTGT
AGACGTAACAGGCGACCAACCAGTCAGCCTGACTTTGAATCCCGGTGATC
ACGCAAGGCCGACAGATACATGGTACGATAATTAATTTTCGGAATCATGA
AATGTTGTCTAAACTTCGTCGATGCCTACTCCTCATTTCAGCCTGCTGCT
GTGCTATGCACATCGCATTTCGTAGGCATCTATAATTTTGGGGAAGCTAC
CTGGTCGACCACCGGGTTTGGGTCTACGCCGTGGCGATATCGTGATCTTC
TCACCGCCAGAAGCCTCCAGGTACCTGGACTTAACCAATACCGTATGCAT
GGGTTGCATAAGATACCACACCCCCTGGACCGATTTGTAAAGCTCGATTC
CTCCACGACTGAGAAGTCAAAATCAAATGATACATTTTCAGAAATTTCTC
GAAGGGCAGGCTTCGATGCCGCAATTTGGCACCGTCCCTGCTTCTGCTGT
AGAAGAGTTGAGCTCCGATTTTCGGTCCCGAGGGTGTGATATCTTATGCA
ATCTAGAGCAGTACGAACGTTGCCTTTCAACGTGGTGGTTTGTGCGTGGT
TTTTTTATTGGGAGCTAGGTGATCAATGTATTGCGTACATCCCTCGACTC
GACTCGGTTGTAAAGCATGCCAAGATCCCAAAAACGTCGTCGTGGGCGTA
GGAAGGGTTCGTTTCAATCACACGCTGGTGTGGACAACTTACCCCTTTCA
TCCAGTTCCGGCCTGAACTAACTACTTGCTGCTCCTGCTGGTTCTGCATA
CCACCAAATCGCGACCACGACCTGCATTGTTCAGAAATATGTACGCTGAG
CTCCTTCGATTAGCAAGTGGGGCAACGACCGCCACACCAAACCCAGTCGG
GGACAGAAGAAAAGGACACATTCTGTCGCTGACACGGTGCGAGCGTAGGC
GGAGCCCGCTAAACTCATCGTTGGACTTTACAAAGGTGATCATGACTGCG
TTCCATCTGCACGAATAGCGTTGTTTGAATATCGCATTTGTTTTGCAGCA
ATGGGACTTCATTCCCTGACGTGGAACTACAATATCACAACCGACCGTTA
CGTAGTGCTTCATGATATATTTGGTAGTTTTGGGATAAGATACACACACG
TGTTGTCTATGAACCCACACCCCGAAAAACCTCCAGCTTATGCTCAGAAG
CGAAGCTTCACCTGGACGTCTTTCACATGTCTGTTTTCCTACCCACTCCA
CTATGACAGCGTGTGGTGGCCGTAGCAGGAGACCATGTTGCTGTCAGAAG
AGGCGTGCTCTACGTGAATGAGAGTCCAGCGGACGAACGTCAACGCTCCG
CGCGGGCCAGCTATTCTTTTGGGCCAACCGTGGTGCCGAAGGACCACATC
ATTGTGCTTGGAGACAATCGAGATGCGAGTTTTGATTCTCACGTGTGGGG
CCCACTCCCGGTTCGGAACGTGATAGGCTGCGCCAGGGCGCGTTATTGGC
CAGTGAACCGAGCGGCTTGGCTCAAGAGAGGTGCTTGCCTTGATCGATGA
TGGCTCTTCCTCAAGGACTGGTACACAC
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Coding sequence (CDS) from alignment at Scaffold_17:142575..145702-

>EsuBft107_10a-0001 ID=EsuBft107_10a-0001|Name=EsuBft107_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=693bp|location=Sequence derived from alignment at Scaffold_17:142575..145702- (Ectocarpus subulatus male Bft15b)
ATGTTAACTGCGTCATCATACAGTGAAGCTAGATCTTTGACGGCTGCGCT
GGTGTTGTGTGCAGCAACGAGAATGTGTGTGGTCGACCAGAGGACGGTTA
TGTCCTGCTCTATGCAGCCCGCGTTGGCATTTGGTGATCGGGTGCTGGTG
GACAAGGCATCTATAATTTTGGGGAAGCTACCTGGTCGACCACCGGGTTT
GGGTCTACGCCGTGGCGATATCGTGATCTTCTCACCGCCAGAAGCCTCCA
GAAATATGTACGCTGAGCTCCTTCGATTAGCAAGTGGGGCAACGACCGCC
ACACCAAACCCAGTCGGGGACAGAAGAAAAGGACACATTCTGTCGCTGAC
ACGGTGCGAGCGTAGGCGGAGCCCGCTAAACTCATCGTTGGACTTTACAA
AGCGTGTGGTGGCCGTAGCAGGAGACCATGTTGCTGTCAGAAGAGGCGTG
CTCTACGTGAATGAGAGTCCAGCGGACGAACGTCAACGCTCCGCGCGGGC
CAGCTATTCTTTTGGGCCAACCGTGGTGCCGAAGGACCACATCATTGTGC
TTGGAGACAATCGAGATGCGAGTTTTGATTCTCACGTGTGGGGCCCACTC
CCGGTTCGGAACGTGATAGGCTGCGCCAGGGCGCGTTATTGGCCAGTGAA
CCGAGCGGCTTGGCTCAAGAGAGGTGCTTGCCTTGATCGATGA
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