EsuBft1078_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1078_2a-0001
Unique NameEsuBft1078_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_91contigScaffold_91:103230..105803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1078_2
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length137
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1078_2aEsuBft1078_2aEctocarpus subulatus male Bft15bgeneScaffold_91 103230..105803 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1078_2a-0001EsuBft1078_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_91 104047..105803 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1078_2a-0001-exonagat-exon-106963Ectocarpus subulatus male Bft15bexonScaffold_91 103230..104285 -
EsuBft1078_2a-0001-exonagat-exon-106962Ectocarpus subulatus male Bft15bexonScaffold_91 104485..104773 -
EsuBft1078_2a-0001-exonagat-exon-106964Ectocarpus subulatus male Bft15bexonScaffold_91 105090..105114 -
EsuBft1078_2a-0001-exonEsuBft1078_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_91 105796..105803 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1078_2a-0001-exonagat-three_prime_utr-730Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_91 103230..104046 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1078_2a-0001-cdsEsuBft1078_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_91 104047..104285 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1078_2a-0001 ID=EsuBft1078_2a-0001|Name=EsuBft1078_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1378bp|location=Sequence derived from alignment at Scaffold_91:103230..105803- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGCCTTGGGATCATCGGCCGACCACAGGACGTGGGCCGAGGACA
CGGGAAAACCGCCGGAGGGAAAGTACCCGAGCAGCAGATAAACCGGTTGT
GGCAGCAAGCGTACTCATCGTTGGAGGTGCTGAAAGAGGAGCGGGAGCGC
GATGTCAAGCAGCTGGAGCTCACGCGGAAGGCGAACGAGGTTTTGTCCGG
TTGCAAGCATGCAACGGATGCCGCCGTGAAGGAAACCGATGCCAAACGGT
TTGACCTGCTCAACGAGGCGTCGTTAGTTCGGCACGAGGCTTCGCTCCTG
CGGATCGCGGCAAAGGTAGCAGATAAGTACTTGACGATCGGTCGGGTGCG
GCGCTTTGCCCGGCGAACACGAGACTACTGCCGGGCTTACCGCGAGATTG
CGCTCAGCGGGGTAGTTATCAGGAGCAAGGAGTTCATCGAGAAGACGCGC
AAGTTCCAAAAGGCCCACGCAACATGTTGGACATGGAAACTAGTATTCTT
GGCGACCAGTAACAACGTCGGCCGGCCGATGGCGAGGGGGGGGGGGGCTC
GGTTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGCATGCTTTGTTTTATTCTG
TGAGATAAGCGGGTGTTGTGTGAGTTGCTCTGTATTGTCGTTGTAGATTG
TAGTCGGTGGCATATACATTGGATTTTTTTTTCTGCGAGAGAAACGGGTG
TGGTGGGTGTGTTTGTGATGTAAATTAGTCGGTTTCAAGCTGTAGTTTGC
ATTTTTTTTTCTGTGAGATTAACCGGTGCGAGAAGTTGTGTGTGTGCGTT
CATGAGTCTGTCAGTTTGAGTGTTTTTTTTAGATAAACGGGTGGTTTTTA
ACCGTTGTCAATCAACGAAGTGTTTTTTTTCCATGTACAAGGAGACGTCA
ACTTTTGTGCGATTTGTGTAAAGCATTTGTCATGCGTTTTTGGAGCGCTT
ACCTTCAGATTATAACCTCTTGCATGCATGTGTGTCACGTCATTACGATC
GATATGCACCCACACCTACCTGTCCAATCAAAGGGGTACAGTCAGCATCT
GTGCGCCTCTTGCCATCAGGCCGCTTTCGCGCCCCTTTTCACGGGCTGTG
AGGCCCTCATTTTCCTACACATTGTCCGCCCCTGCACCCAGGTATCGAGG
TCAATACGCAATTTGCTATTTCCGAGCCGGTTTTCACGAACTAGAAGCTG
AAATTTTGATATGTGATTGGGAGTGGTCTTACAAATGCCACCGAGTCAGG
TGCAGTTTTTTTTTTTTAAGTCACAAAA
back to top

protein sequence of EsuBft1078_2a-0001

>EsuBft1078_2 ID=EsuBft1078_2|Name=EsuBft1078_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=187bp
MAGLGIIGRPQDVGRGHGKTAGGKVPEQQINRLWQQAYSSLEVLKEERER
DVKQLELTRKANEVLSGCKHATDAAVKETDAKRFDLLNEASLVRHEASLL
RIAAKVADKYLTIGRVRRFARRTRDYCRAYREIALSGVVIRSKEFIEKTR
KFQKAHATCWTWKLVFLATSNNVGRPMARGGGARLGX
back to top

mRNA from alignment at Scaffold_91:103230..105803-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1078_2a-0001 ID=EsuBft1078_2a-0001|Name=EsuBft1078_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2574bp|location=Sequence derived from alignment at Scaffold_91:103230..105803- (Ectocarpus subulatus male Bft15b)
ATGGCGGGGTATGTTGATTTGTACACGACCACATCTTTTGTGAGATGTGG
TCGTCAGCCGGGATTTTTGAATTTTCGACGGCATGCTTCGAACCCACAAC
TGTAATCGCCCAACGTGATATCCACGTCCACATGAGTTGCCTTCATCACT
CGTCTGTTGTCCTGGTACTAGAGGCGCCTACAGCAGTACGCACAACATTT
TTTGCTACAATATGGTACCTGTACACTCCGATGTGTTTGCTGCAACGATG
TGCTGCCCTATATGACACAAGATAACACACACCCCTGAACGGATTTTCTA
CAGCAGAACGAGTCGCAGCGCCGAAAACGGCAGTATTGAAGCCGTCTTGT
CGAGAGCTCTCCGGAACCTTATCGTGTTGTTCATGCATCCTCTTCGTCGT
GGAGTACTCGAGCTCGAGCGTGGAAATCGACCCAGGGGGTGCGTTATCAT
GTGTCGTACTTCGGTCTGAAAGTAAATCTCTGCATGAAAATGCGCCGATG
TCGTCACACATTCGCGCAAGGTTGACCGGTTGTTGCACCTCTGCACATCA
CGTACTACTTGGGTGATCTCCAACTCTAAAATACTTGCTGCAAGTACTGC
TGTAGTGCACAACAACGAATAACAATATGCCGCACTGCCTCGTGCTTCAA
ACTCCCAACCGCCGCTCAAGCAGGAAAATCGCTTAACAGCCTTGGGATCA
TCGGCCGACCACAGGTACGGCAGTTCAAGCGACAGCGGCGGGCTGGCTCC
GACGCGACCCGCGCGGAATTCGCAATGCAGCAGATGCTCACCAGCCGCGA
AAACGCTCGATAGAGCGGGGTTGGAGAAGGAGAGACAGAAAGCTTCGAAA
GGCCTTCGACAAACGTGGAGCCTACCTCGGCGGCCGGATCAAAGACTTGA
CGGCAAACGTTGCAGCCAACTAGCAACACATCAAGCGTCTCCAGGACGCC
CTCCGGACTAGCCACCTCCCCAGCCTTCTCCTCCCCCTCCCCCTCCCTTC
CGTGGAGGACGTTGAGAACGCGGGCGATAGGACGTGGGCCGAGGACACGG
GAAAACCGCCGGAGGGAAAGTACCCGAGCAGCAGATAAACCGGTTGTGGC
AGCAAGCGTACTCATCGTTGGAGGTGCTGAAAGAGGAGCGGGAGCGCGAT
GTCAAGCAGCTGGAGCTCACGCGGAAGGCGAACGAGGTTTTGTCCGGTTG
CAAGCATGCAACGGATGCCGCCGTGAAGGAAACCGATGCCAAACGGTTTG
ACCTGCTCAACGAGGCGTCGTTAGTTCGGCACGAGGCTTCGCTCCTGCGG
ATCGCGGCAAAGGTAGCAGGTCCTAGTCCGCAGGCTTATGCGCCATCGAC
GATCCTGAGGTGGCTCAGAGACTTTCGGAAGGAAGGTGGTTTAAGGCGGG
ATGCACGGGGTGCGCACGAGCCGAACTGGATCATTTCAGAGGAGGATCTG
AAGAGTGAATTGCTGGCGTGGATGATATTACAACCGCGTGTCACCATCAA
GGACGTCTGCAAGTACAGATAAGTACTTGACGATCGGTCGGGTGCGGCGC
TTTGCCCGGCGAACACGAGACTACTGCCGGGCTTACCGCGAGATTGCGCT
CAGCGGGGTAGTTATCAGGAGCAAGGAGTTCATCGAGAAGACGCGCAAGT
TCCAAAAGGCCCACGCAACATGTTGGACATGGAAACTAGTATTCTTGGCG
ACCAGTAACAACGTCGGCCGGCCGATGGCGAGGGGGGGGGGGGCTCGGTT
GGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTGTGCATGCTTTGTTTTATTCTGTGAG
ATAAGCGGGTGTTGTGTGAGTTGCTCTGTATTGTCGTTGTAGATTGTAGT
CGGTGGCATATACATTGGATTTTTTTTTCTGCGAGAGAAACGGGTGTGGT
GGGTGTGTTTGTGATGTAAATTAGTCGGTTTCAAGCTGTAGTTTGCATTT
TTTTTTCTGTGAGATTAACCGGTGCGAGAAGTTGTGTGTGTGCGTTCATG
AGTCTGTCAGTTTGAGTGTTTTTTTTAGATAAACGGGTGGTTTTTAACCG
TTGTCAATCAACGAAGTGTTTTTTTTCCATGTACAAGGAGACGTCAACTT
TTGTGCGATTTGTGTAAAGCATTTGTCATGCGTTTTTGGAGCGCTTACCT
TCAGATTATAACCTCTTGCATGCATGTGTGTCACGTCATTACGATCGATA
TGCACCCACACCTACCTGTCCAATCAAAGGGGTACAGTCAGCATCTGTGC
GCCTCTTGCCATCAGGCCGCTTTCGCGCCCCTTTTCACGGGCTGTGAGGC
CCTCATTTTCCTACACATTGTCCGCCCCTGCACCCAGGTATCGAGGTCAA
TACGCAATTTGCTATTTCCGAGCCGGTTTTCACGAACTAGAAGCTGAAAT
TTTGATATGTGATTGGGAGTGGTCTTACAAATGCCACCGAGTCAGGTGCA
GTTTTTTTTTTTTAAGTCACAAAA
back to top

Coding sequence (CDS) from alignment at Scaffold_91:103230..105803-

>EsuBft1078_2a-0001 ID=EsuBft1078_2a-0001|Name=EsuBft1078_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=561bp|location=Sequence derived from alignment at Scaffold_91:103230..105803- (Ectocarpus subulatus male Bft15b)
ATGGCGGGCCTTGGGATCATCGGCCGACCACAGGACGTGGGCCGAGGACA
CGGGAAAACCGCCGGAGGGAAAGTACCCGAGCAGCAGATAAACCGGTTGT
GGCAGCAAGCGTACTCATCGTTGGAGGTGCTGAAAGAGGAGCGGGAGCGC
GATGTCAAGCAGCTGGAGCTCACGCGGAAGGCGAACGAGGTTTTGTCCGG
TTGCAAGCATGCAACGGATGCCGCCGTGAAGGAAACCGATGCCAAACGGT
TTGACCTGCTCAACGAGGCGTCGTTAGTTCGGCACGAGGCTTCGCTCCTG
CGGATCGCGGCAAAGGTAGCAGATAAGTACTTGACGATCGGTCGGGTGCG
GCGCTTTGCCCGGCGAACACGAGACTACTGCCGGGCTTACCGCGAGATTG
CGCTCAGCGGGGTAGTTATCAGGAGCAAGGAGTTCATCGAGAAGACGCGC
AAGTTCCAAAAGGCCCACGCAACATGTTGGACATGGAAACTAGTATTCTT
GGCGACCAGTAACAACGTCGGCCGGCCGATGGCGAGGGGGGGGGGGGCTC
GGTTGGGNNNN
back to top