EsuBft1077_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1077_7a-0001
Unique NameEsuBft1077_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:204381..208628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog80637.XP_007771274.1
ProteomeIdEsuBft1077_7
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSSF161084
Protein domainsTMhelix
Protein domainsIPR023352
Protein domainsTRANSMEMBRANE
Protein domainsIPR001129
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl4751|Fungi
Length157
Hectar predicted targeting categorysignal peptide
Evalue1.07e-10
EggNOG OGs2E07R@1|root,2S7P4@2759|Eukaryota,3A961@33154|Opisthokonta,3P6QZ@4751|Fungi,3V2D4@5204|Basidiomycota,22A3N@155619|Agaricomycetes
Date last modified2016-06-14
Date creation2016-06-14
DescriptionMAPEG family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_7aEsuBft1077_7aEctocarpus subulatus male Bft15bgeneScaffold_195 204381..208628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_7a-0001EsuBft1077_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 205282..208237 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_7a-0001-exonagat-exon-79854Ectocarpus subulatus male Bft15bexonScaffold_195 204381..205335 -
EsuBft1077_7a-0001-exonagat-exon-79853Ectocarpus subulatus male Bft15bexonScaffold_195 206109..206175 -
EsuBft1077_7a-0001-exonagat-exon-79855Ectocarpus subulatus male Bft15bexonScaffold_195 206777..206923 -
EsuBft1077_7a-0001-exonagat-exon-79852Ectocarpus subulatus male Bft15bexonScaffold_195 208071..208271 -
EsuBft1077_7a-0001-exonEsuBft1077_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 208429..208628 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_7a-0001-exonagat-three_prime_utr-728Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_195 204381..205281 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_7a-0001-cdsEsuBft1077_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 205282..205335 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_7a-0001-exonagat-five_prime_utr-458Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_195 208238..208271 -
EsuBft1077_7a-0001-exonagat-five_prime_utr-459Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_195 208429..208628 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1077_7a-0001 ID=EsuBft1077_7a-0001|Name=EsuBft1077_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1570bp|location=Sequence derived from alignment at Scaffold_195:204381..208628- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCGCTGTGGAGAGGAACCATTCCACCCTTGCAACTGGCTGTTGTTGTCTG
GACAACGCCGGGAACCGAAAACAAGAGTACTGCACGGGTGGGTCTACAGC
TTTGGCGCGCGTGTGCATCCAATTTGGCTGAGAGGAGTGAGATACAATCA
ATCTCTGATGTGATAACCCCGCCGTGCACACCAGTTGTTTTGAACGGCAA
GTCTAAAACGAACGCTGCCGCAGTTACCTCCGGGATGTCGCCTCCTCTGT
GGGCCCTCAGCCTCCCTGTAGGCACCGTCTTCGTCTTCGTTCCCCGCGCC
ATTTCGTTGGCGCTGCAAATCATGTCTGGAGCGCCCCTGAGGAACAGCAA
CCCTCGAGAGCACGCCGAGAGCAAGGATGTCGCCGCCAAGGACACCCATG
GGTACGTGCGTCGCGCGTACGCGGCTCACCAGAACAGCTGGGAGGCCATG
ATCCTGTGGTCTGCGGCGGTTCTCGTCGCAAAGTCGACGGGGGTGGATGT
GGACGTGATGAACAATACGGCAGCTGTGTGGTTGGCGGCTCGGTTCGTCT
ACACGCCGGCGTACATTCTGATCAGGAGCAACACGAAGGCGTTCTTCCGA
ACTTTCGTCTTCATGATCGGCACGTCCTGTTCCATGCGCCTCATGTGGCA
GGCCGCTTTGAAGGCTTGACGCAACTTCCTTGAGAGGGCGGTTGTCTTGA
TTCACCCATTGTCTCACCGCTTTGCGAGCAGTACGTCCCCAAAAATCCTG
GGCTCCTTTACCGCCTGGGATCATTCTCGGTGACGAGTAGATTGAGGAAG
TCATTGATTGAATCAGGACTCGTCGGGGTGCGTTTGGCAAGGTATTGGAT
TATTTGTGGCCCTCACTATACGGTTCAGGGACAGTTTTCAGGTATTGTTT
GCCGTGGATTCCGTGCCTGTGAAGGCACTTGTCGCACTGGTCGGGGTTAT
GAGAAGGTGCGTCTTCGTAAGACTTGGGTGTTGTTGAACCGCCTGGCACT
GATTGGCGATGTCGTACCTGCATGTTTGAGGTGCGACTCTTAGGGTAGGC
TAACTAGCGGAATTTTGAGGGCTAGTTGAGCGCTCCGACCGCTTTCGATA
TTCCTGTATGTAGGCAGGCCATCTGTGCCGTCTGTAGTGAAATCTTGAAC
GGGTTCATAGCTGGCCAACGCCCTTGCACTGCGCGCCTGGTGTGTAAAGT
ATGAGACAAAGTAGATTTTCCTTCATCTTCGCACATCGTTGTTTCGATGC
GGCGATCACGGATAGATAGCTCTCGCGATGGCAGATGCTTGTTTCCCCGG
CGTAACTGGCCCGTCCGTTGCGTACGGGGTACTCACCGAACACGCGTCGA
TTGCCACGGCGGCATGATCCGGGCGGCTTGGGGGTGGGGTCACCTTTTCA
ATGCTCTCAGTGCAGCACTACTTCATCATGTCTTCCTGCGACTCAGTTCT
CGCTGCCTGACCTTGTGGAAGGAGATCCTGAGATTCTTGAGACTCTCCCA
CGCGTTTCTCCCCGGTATGGTGAAGTTCGAGGGCCACAGACAGAAAGAAG
TGACGAGTTGTTTTCTTGTT
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protein sequence of EsuBft1077_7a-0001

>EsuBft1077_7 ID=EsuBft1077_7|Name=EsuBft1077_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=144bp
MSPPLWALSLPVGTVFVFVPRAISLALQIMSGAPLRNSNPREHAESKDVA
AKDTHGYVRRAYAAHQNSWEAMILWSAAVLVAKSTGVDVDVMNNTAAVWL
AARFVYTPAYILIRSNTKAFFRTFVFMIGTSCSMRLMWQAALKA
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mRNA from alignment at Scaffold_195:204381..208628-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1077_7a-0001 ID=EsuBft1077_7a-0001|Name=EsuBft1077_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4248bp|location=Sequence derived from alignment at Scaffold_195:204381..208628- (Ectocarpus subulatus male Bft15b)
TCGCTGTGGAGAGGAACCATTCCACCCTTGCAACTGGCTGTTGTTGTCTG
GACAACGCCGGGAACCGAAAACAAGAGTACTGCACGGGTGGGTCTACAGC
TTTGGCGCGCGTGTGCATCCAATTTGGCTGAGAGGAGTGAGATACAATCA
ATCTCTGATGTGATAACCCCGCCGTGCACACCAGTTGTTTTGAACGGCAA
GTCAAGCACAAGTAGGGCAGTGTGTACGCTGTAGATAATCCCAGCTTTCT
CCTGGGCCGGAAACAGGACTTGAGAAATCCGCACGCTCGCTGCCTTCCAT
GAGGAGGGCGATCGGGACCTCCTGCTCATTAATAATCTCGCTGCAACCTC
TCAGCAGGTCTAAAACGAACGCTGCCGCAGTTACCTCCGGGATGTCGCCT
CCTCTGTGGGCCCTCAGCCTCCCTGTAGGCACCGTCTTCGTCTTCGTTCC
CCGCGCCATTTCGTTGGCGCTGCAAATCATGTCTGGAGCGCCCCTGAGGA
ACAGCAACCCTCGAGAGCACGCCGAGAGCAAGGATGTCGCCGCCAAGGAC
ACCCATGGGTGAGAAAGAATAAATACAGCAGCAATAGGCAACAGCAGCAG
CAAGCTGCCCGATGCGCTGCAAGATGCGCCGGCGGCCTGCTATCATGTGC
GAGTGTGTGTTTGATGCCGAGACGCGAGGGTATTCGCCAGCTGCTGCCTT
TTCACGTTCAACATTTGAATGTAGACTACTACTGTAGTGTCGCAAACATG
GAGAGGGGCGGGGTTGATATCTCCACCAGGCAGGAGTAGGTGCACAGAAC
TACTGTATATGACATAAGATAACACACCCCCTTGACCGATGTTCGACGCT
CGATTTCTCAACTGCAGGAACAGCAGTCACAGCGCCGAAAACGGCGGCGT
TGAAACAGTCTCATCGAGAGCTTTTCGAAAACGTATCATTTCGTTTAGGC
ATCCTCTTCGTCGTGGAGTCATCGAGCTTTGAGAATCGGTCCAGGGGGTG
TGTTATCTTGTGTCATAAACGGTATGCGAATCCCTGCTGAAAATTGACGC
TTTATTTTTTATGTGTCACTTGTCTGTGTCTTGAAGATGCATGCATATGC
TAAACACGTCGTTCCTCGTTCAAATTACTTCCACATATCGTCGGGATACC
GATACATATCACATGTACAGCAGTAGCTCTACGTTATTCACAGCTGAATA
TGCAGACAGATATCGATAGACTACCGTATACGACACAAGATAACACACCC
CCTGGACCGACTTTCAACGCTGGATTTCTCAACAGCAGGAAAAGTCATAT
CGCCGCGGCGGCGTTGAAGCCATCTCGTCGAGAGCTTTCTGAAAAGTATC
GTTTCGTTCATGCACCATCGTCGTGGCGTAATCGATCTTTGAAAATCGTT
GTAGGGGATGTGTTATCTTGAGTCGCATACGAAATAGCGCAAAGACCGAT
GTTCAACACGATATTGCCTTGTTCTTGGTCCTGCAGATGATATGCACGTT
TCTGTGCGCATGGCAGACACAAACTCACGGCAGCACCATCGTTGGTTGTC
ATGAATCGTGCGAAAAGGTGTTGCCATGATTCTGCTCCGCGCTTTTATTG
CGACGATGAAATTACACGCTACAGTACCACGGGTACCATGTGATTAGCAG
CGTTCATTACCAACGGATTGTGTGTTTGTTTCACATCAACACTTGTTGTT
TTCAGGTACGTGCGTCGCGCGTACGCGGCTCACCAGAACAGCTGGGAGGC
CATGATCCTGTGGTCTGCGGCGGTTCTCGTCGCAAAGTCGACGGGGGTGG
ATGTGGACGTGATGAACAATACGGCAGCTGTGTGGTTGGCGGCTCGGTTC
GTGTGAGTATAATATGCATCCAAAACCACCGTGGAAGACCATGGCAGACG
AGCGAGATGAGGGTCTTCTCCCACCTTTTGTGATTTGTTCTATTTGCACC
AGGACACATACCTGTACTTGCCACCCAAACTCACTCTCTCCGTCGAAACA
GTCACAGGGGGCTCCATGAATCCCTGTCAGGACGAAGCAACCCTTCTTTG
GGGGAGGGACAGCGTTGTTTCGACCGAGACCTCCTTGAGACTGCCCTTGA
TTGTGCTGTTCTTGTTTTTCCTAAGGCTCTCGAAAGATAAATTCATTGCC
TGTGGACTACGCGGAGTGCGACAGTATCCAACCTTACAGTTCGCCTGAGC
GGTGCATGCATAACGTTCCAGTCGAGGGTCAGTCGTGTTGTGCTGGAACG
AGTTTTTATGTTACAGTAGGAACATGTTTACAACAGCGTGATGACGGAGT
CGATGTGCTAGTACCTGTGCTCCACTACGTTGTACATGGGTGATAACCTA
ACTGATACTGTTCCGCACGTTTGAAAAGTGTCGCAAAACTTGACCCGTCG
CTTTTTTCTTAACTGTTTTACTTCCCACTCCCCCTCTTTCCGTGGCCGTT
CAGCTACACGCCGGCGTACATTCTGATCAGGAGCAACACGAAGGCGTTCT
TCCGAACTTTCGTCTTCATGGTGCGTGGAGAAGGGGATATGCTGCAGTCT
AGTCGAATTAATGTGTCCCCCGGACGTGCACCAGGATCACACACAAACAA
GTAGTATGCTACAGTTTTAGTCGTATGAATTCTTCCTCCGGACGTTTTCA
GATTCACATACAGACAAGTACGTTGTGGCTTTTGTTATCTTGGTTATTGA
ACCATCACTATTAGAGGCAGACACGATACGGAAGCTCATTCCTAGTACTG
CTTAGAGAACGGAATGGCGTGGTGTACGTGTGCCACGTATTATCTGTCCT
CCCGGCCCGTGTGGTAGGGTTCTCCTCCTGTCAATAGCAGCGGTAGTGCA
ACACAAGTGCCGGCAAAATGAGTGGTTGTGGTAGAAGACGTAGCGAAAGC
ACTCATGGTAGTACCAGTGGTGGGATGAGGACTGGACTGAGTGTCCGACG
GGCTTGGCACAACTCAGTCAAAGTTTTAGAATCGCTAGCCTTGGCGTAGA
AAGCAGCACCCGTGCCCCCTCCCCGGCCCGAAGGGCTGACCATGTCACCT
CATGTCTGAGGTTATCGCGTTGCTGTTGCGGTTTTGCGTTAAGCTTGTCC
ACGCAATATCGTGCTTAGTGGCCGGCAGTTTGTCGCAGAAGGTAGCCTAT
GTCGGTGCAGGTGTTGACCGTCTGGTGTATGTGCAAGAAGCAGTTTTATC
AACGAGCTCGATTCGTCACATGAAACAAACGTCACGTCTCAATGCCCCCC
TCCCTCTGTTTTGCCGTTGCATCACGTCTTTTATCATTTACAGATCGGCA
CGTCCTGTTCCATGCGCCTCATGTGGCAGGCCGCTTTGAAGGCTTGACGC
AACTTCCTTGAGAGGGCGGTTGTCTTGATTCACCCATTGTCTCACCGCTT
TGCGAGCAGTACGTCCCCAAAAATCCTGGGCTCCTTTACCGCCTGGGATC
ATTCTCGGTGACGAGTAGATTGAGGAAGTCATTGATTGAATCAGGACTCG
TCGGGGTGCGTTTGGCAAGGTATTGGATTATTTGTGGCCCTCACTATACG
GTTCAGGGACAGTTTTCAGGTATTGTTTGCCGTGGATTCCGTGCCTGTGA
AGGCACTTGTCGCACTGGTCGGGGTTATGAGAAGGTGCGTCTTCGTAAGA
CTTGGGTGTTGTTGAACCGCCTGGCACTGATTGGCGATGTCGTACCTGCA
TGTTTGAGGTGCGACTCTTAGGGTAGGCTAACTAGCGGAATTTTGAGGGC
TAGTTGAGCGCTCCGACCGCTTTCGATATTCCTGTATGTAGGCAGGCCAT
CTGTGCCGTCTGTAGTGAAATCTTGAACGGGTTCATAGCTGGCCAACGCC
CTTGCACTGCGCGCCTGGTGTGTAAAGTATGAGACAAAGTAGATTTTCCT
TCATCTTCGCACATCGTTGTTTCGATGCGGCGATCACGGATAGATAGCTC
TCGCGATGGCAGATGCTTGTTTCCCCGGCGTAACTGGCCCGTCCGTTGCG
TACGGGGTACTCACCGAACACGCGTCGATTGCCACGGCGGCATGATCCGG
GCGGCTTGGGGGTGGGGTCACCTTTTCAATGCTCTCAGTGCAGCACTACT
TCATCATGTCTTCCTGCGACTCAGTTCTCGCTGCCTGACCTTGTGGAAGG
AGATCCTGAGATTCTTGAGACTCTCCCACGCGTTTCTCCCCGGTATGGTG
AAGTTCGAGGGCCACAGACAGAAAGAAGTGACGAGTTGTTTTCTTGTT
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Coding sequence (CDS) from alignment at Scaffold_195:204381..208628-

>EsuBft1077_7a-0001 ID=EsuBft1077_7a-0001|Name=EsuBft1077_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=435bp|location=Sequence derived from alignment at Scaffold_195:204381..208628- (Ectocarpus subulatus male Bft15b)
ATGTCGCCTCCTCTGTGGGCCCTCAGCCTCCCTGTAGGCACCGTCTTCGT
CTTCGTTCCCCGCGCCATTTCGTTGGCGCTGCAAATCATGTCTGGAGCGC
CCCTGAGGAACAGCAACCCTCGAGAGCACGCCGAGAGCAAGGATGTCGCC
GCCAAGGACACCCATGGGTACGTGCGTCGCGCGTACGCGGCTCACCAGAA
CAGCTGGGAGGCCATGATCCTGTGGTCTGCGGCGGTTCTCGTCGCAAAGT
CGACGGGGGTGGATGTGGACGTGATGAACAATACGGCAGCTGTGTGGTTG
GCGGCTCGGTTCGTCTACACGCCGGCGTACATTCTGATCAGGAGCAACAC
GAAGGCGTTCTTCCGAACTTTCGTCTTCATGATCGGCACGTCCTGTTCCA
TGCGCCTCATGTGGCAGGCCGCTTTGAAGGCTTGA
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