EsuBft1077_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1077_6a-0001
Unique NameEsuBft1077_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:209446..211411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog314232.SKA53_01476
ProteomeIdEsuBft1077_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl28211|Alphaproteobacteria
Length97
Hectar predicted targeting categoryother localisation
Evalue2.27e-10
EggNOG OGsCOG1187@1|root,COG1187@2|Bacteria,1MUCE@1224|Proteobacteria,2TQP2@28211|Alphaproteobacteria,2P8B5@245186|Loktanella
Date last modified2016-06-14
Date creation2016-06-14
Preferred namerluB
KEGG koko:K06178
EC5.4.99.22
DescriptionS4 RNA-binding domain
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_6aEsuBft1077_6aEctocarpus subulatus male Bft15bgeneScaffold_195 209446..211411 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_6a-0001-exonagat-exon-79851Ectocarpus subulatus male Bft15bexonScaffold_195 209446..210271 -
EsuBft1077_6a-0001-exonEsuBft1077_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 211263..211411 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_6a-0001-exonagat-three_prime_utr-727Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_195 209446..209791 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_6a-0001-cdsEsuBft1077_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 209792..210271 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_6a-0001-exonagat-five_prime_utr-457Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_195 211389..211411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_6a-0001EsuBft1077_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 209792..211388 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1077_6a-0001 ID=EsuBft1077_6a-0001|Name=EsuBft1077_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=975bp|location=Sequence derived from alignment at Scaffold_195:209446..211411- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTACGGAAGAAAAGCTGAGGGCCATGCGCAGCGGCTGCACAATCGACGGG
GTTCGGTACAAGGGCATGTTCGTGAGAGTGGAAGGGGGCGGGGGCAAGGG
GAGAGAGGGCCGGAACGCCTGGCTCACCATTGAGTGCACCGAAGGAAAAA
TCTGCAAGTACTTGTGCCTGACCGTAAACCGGCTGGCCAGGACCGGCTAC
GGCCCCTTCAGCCTGGGAAAGGTACGGGCCGGCGGGGTCGCCGCCGTAGA
AATCCCGAAGGCGTTCATGCGCCGTCTCGAAGACGGCGGTGGCTCGCCGG
GCGGGGCAGGAGGCGGCGGCAGCGGTACCAGCGGGAGAAGACTGGGCCCG
GGGCCTGGGAACGGGATGCGGCGGGAATTGGAGGCTGGGAGGATGAGGGT
ATCGGAGGTGTCTTCGCCGGGGGGCGGGAACAGCAGCACTGTAGGCGGGG
GAAGGGACACCGACGATCGCGCTATTAGCTCTGGAGGGCGGCATTGGGGC
GATGGGTTTAGAGGAGCTGGTAGGTCGTGGGGAGGGAAAGGGGGCCCGCG
GATTCGGAAAGGGGTCGGGGCGCCGATGTCACGGGGGGATAATTCCGCCC
GTCCAACGGCGCAGCAGCGCGCACGGTAGGGGCAGGTTGTCGGGGGCGGG
GAAGCAGAGAGTCTGGGAGATATGTACAAATAGTGAAGTGCTTGCCGGGA
GACTTTTGAAGCCCAAGTCAAAGCATTGACTATTTACATTGTTGTCAGGG
CTGTGACTTTTTATCTGATTTGATTTCAGCATCTAAAGAACGACCGTGAC
ATGTAGTGAGAATGGAATGTATCCAAGGTGTGTGCATGGTCGCTCTGAAA
AAGACACACAAAGAGGGTGAACAATAGACGGAGCTCTTTTCCCGTCGAAG
TTCGAAGACTATGCCAGTTTGTACAACGCCGCCCCCCTACAGTGCGGCAA
ATATAAATACCTCAGGCAGGAACCG
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protein sequence of EsuBft1077_6a-0001

>EsuBft1077_6 ID=EsuBft1077_6|Name=EsuBft1077_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=201bp
MRSGCTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTEGKICKYLCLT
VNRLARTGYGPFSLGKVRAGGVAAVEIPKAFMRRLEDGGGSPGGAGGGGS
GTSGRRLGPGPGNGMRRELEAGRMRVSEVSSPGGGNSSTVGGGRDTDDRA
ISSGGRHWGDGFRGAGRSWGGKGGPRIRKGVGAPMSRGDNSARPTAQQRA
R
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mRNA from alignment at Scaffold_195:209446..211411-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1077_6a-0001 ID=EsuBft1077_6a-0001|Name=EsuBft1077_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1966bp|location=Sequence derived from alignment at Scaffold_195:209446..211411- (Ectocarpus subulatus male Bft15b)
TTACGGAAGAAAAGCTGAGGGCCATGCGCAGCGGCTGCACAATCGACGGG
GTTCGGTACAAGGGCATGTTCGTGAGAGTGGAAGGGGGCGGGGGCAAGGG
GAGAGAGGGCCGGAACGCCTGGCTCACCATTGAGTGCACCGAAGGAAAAG
TAAGCGAGGCGATGTTTTGCTGCGTTTGTAGTTGCTATCCGACAACATGC
AGAGCTAGTCTAAGCGCCGTAATTGTAAGCCAGTTTCTGCCTTTTTTTTC
TGCTTCTCGGGAGAATTGTGTCGTGGTGGCCGTACTACCATTAGCTTGTT
GTCGCAGGAATCGCCGCGAGAATCGGGTATCATCGAAGTCGATTACTTGG
GAAAATGTGCCCTGTAAATGTCGACAATGCCGCCAAGAACATCTGTCGAC
GTCAAGTCTTGAGCACGTAGTTTTTCCGTCGCTTGTCGTGAGACTCTTGC
GCTCTGTTGGTTGTGGCAAGCTCAGCGCGGTGCCAGGCCTCACCAACGTC
CTCCCTTCATGCCGTGTGGGGGTAAAATAGTTGTGAGGCCATGCGCGTAA
AGAAGACAGACCAAGCATGCCGAGCACCGTGGTACGCAGCACATTGACGA
ACGATATATATTTTCTCTCTGCCGTTTGTCAATGGAATGTAAGGGTTTCC
CCTTCAAACGCCCCCTTTTTTGAAGGCCCCACAGTTGATCTCCCGACTGG
CCGGACGGACAAGATAGATGCCTCGCATGCAACATCCTAGCATGACCACG
TTTACACACGTAAAAATGAGACTCCCGCGGACCACTCATAGCTCCTTCTC
TAACCCCCGCTTCCCCCCCGACAAGCATCACGCAACCGTACACATCACAG
ATATATACCCCCCGCCCTGTGATATTGATAGGATAGATAGGCTACGGAAG
CCAGGTTTGGGCCACCTTTGGCAAAGCAGGAAGGAACGATTGGCCATTGG
TGATAAGTCCTGTGGGAACAATGCTCCGTCCTCTCGAGGACGCCTGGTCA
GTGGTCTAACCGCAAGAGCATGCAATACATAAGAGTACGCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCNGAACCGGCAAATCCGCAAGATCTGCAAGT
ACTTGTGCCTGACCGTAAACCGGCTGGCCAGGACCGGCTACGGCCCCTTC
AGCCTGGGAAAGGTACGGGCCGGCGGGGTCGCCGCCGTAGAAATCCCGAA
GGCGTTCATGCGCCGTCTCGAAGACGGCGGTGGCTCGCCGGGCGGGGCAG
GAGGCGGCGGCAGCGGTACCAGCGGGAGAAGACTGGGCCCGGGGCCTGGG
AACGGGATGCGGCGGGAATTGGAGGCTGGGAGGATGAGGGTATCGGAGGT
GTCTTCGCCGGGGGGCGGGAACAGCAGCACTGTAGGCGGGGGAAGGGACA
CCGACGATCGCGCTATTAGCTCTGGAGGGCGGCATTGGGGCGATGGGTTT
AGAGGAGCTGGTAGGTCGTGGGGAGGGAAAGGGGGCCCGCGGATTCGGAA
AGGGGTCGGGGCGCCGATGTCACGGGGGGATAATTCCGCCCGTCCAACGG
CGCAGCAGCGCGCACGGTAGGGGCAGGTTGTCGGGGGCGGGGAAGCAGAG
AGTCTGGGAGATATGTACAAATAGTGAAGTGCTTGCCGGGAGACTTTTGA
AGCCCAAGTCAAAGCATTGACTATTTACATTGTTGTCAGGGCTGTGACTT
TTTATCTGATTTGATTTCAGCATCTAAAGAACGACCGTGACATGTAGTGA
GAATGGAATGTATCCAAGGTGTGTGCATGGTCGCTCTGAAAAAGACACAC
AAAGAGGGTGAACAATAGACGGAGCTCTTTTCCCGTCGAAGTTCGAAGAC
TATGCCAGTTTGTACAACGCCGCCCCCCTACAGTGCGGCAAATATAAATA
CCTCAGGCAGGAACCG
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Coding sequence (CDS) from alignment at Scaffold_195:209446..211411-

>EsuBft1077_6a-0001 ID=EsuBft1077_6a-0001|Name=EsuBft1077_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=606bp|location=Sequence derived from alignment at Scaffold_195:209446..211411- (Ectocarpus subulatus male Bft15b)
ATGCGCAGCGGCTGCACAATCGACGGGGTTCGGTACAAGGGCATGTTCGT
GAGAGTGGAAGGGGGCGGGGGCAAGGGGAGAGAGGGCCGGAACGCCTGGC
TCACCATTGAGTGCACCGAAGGAAAAATCTGCAAGTACTTGTGCCTGACC
GTAAACCGGCTGGCCAGGACCGGCTACGGCCCCTTCAGCCTGGGAAAGGT
ACGGGCCGGCGGGGTCGCCGCCGTAGAAATCCCGAAGGCGTTCATGCGCC
GTCTCGAAGACGGCGGTGGCTCGCCGGGCGGGGCAGGAGGCGGCGGCAGC
GGTACCAGCGGGAGAAGACTGGGCCCGGGGCCTGGGAACGGGATGCGGCG
GGAATTGGAGGCTGGGAGGATGAGGGTATCGGAGGTGTCTTCGCCGGGGG
GCGGGAACAGCAGCACTGTAGGCGGGGGAAGGGACACCGACGATCGCGCT
ATTAGCTCTGGAGGGCGGCATTGGGGCGATGGGTTTAGAGGAGCTGGTAG
GTCGTGGGGAGGGAAAGGGGGCCCGCGGATTCGGAAAGGGGTCGGGGCGC
CGATGTCACGGGGGGATAATTCCGCCCGTCCAACGGCGCAGCAGCGCGCA
CGGTAG
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