EsuBft1076_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1076_8a-0001
Unique Name	EsuBft1076_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_211	contig	Scaffold_211:129392..132000 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1076_8
Protein domains	IPR001878
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	254
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0008270

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1076_8a	EsuBft1076_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_211 129392..132000 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1076_8a-0001-exon	agat-exon-57784	Ectocarpus subulatus male Bft15b	exon	Scaffold_211 129392..130961 -
EsuBft1076_8a-0001-exon	EsuBft1076_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_211 131023..132000 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1076_8a-0001-exon	agat-three_prime_utr-723	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_211 129392..130088 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1076_8a-0001-cds	EsuBft1076_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_211 130089..130961 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1076_8a-0001	EsuBft1076_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_211 130089..132000 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_211:129392..132000-
coding sequence from alignment at Scaffold_211:129392..132000-

spliced messenger RNA

>EsuBft1076_8a-0001 ID=EsuBft1076_8a-0001|Name=EsuBft1076_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2548bp|location=Sequence derived from alignment at Scaffold_211:129392..132000- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGCCGCAGAACCGGAGGGACCACTCCGGACGGCTCGCAGGCAGG
AGACACAAATAGCAGCGAGCAGATCGACAGCATGCGGTCTGAGTTCAGTT
CGCTGACACAGCAAATGGGCCAGCTGGTGCAGCTGATCGGAGGACTTGCT
GCACGTATAGAGGAGAAGTCCGGCGGTGCCACGGAGGGCGCCGCTGAAAG
CGGCGGCGCCGTGGAGAGCGTCGCCACAAGCACTGCAGGTCATTTTGGGA
CCGTGCAGTACGACGGGAGCGCGCAGGCAGCGGACCTGCGAAGAGAGTCT
GGTCCTTCGGGACGACACAGCGGCGAAGTAGGGGGTTCAGACCCCCAAGA
GGCGAGAGTAGCCGCTGCTCACAATCAAGCTTGTTTCAGCAGCGCCATGG
GAAGTGGTGCTGCTGTCTTCGGTAGTGCGAGCGTGGGATACCAAAGCGTG
AAGTACACAGCGCCCACGTTCAGCGGAGACGCCAAGAGCTTTTCTTCGTG
GCTAGAGGATTTTTTGATGGCAGCGAACACAGAAAACCTTCTTGAGCTTT
TCGAGGAGGGGGGGGCGGAGATCCCCGTAAACAGTGGGCAGAGCAAAGTC
CAACTGTCCAGGTTTTACCCGCACGACAAAGTAGAGCTCGCTTTCCACGC
GTGGAATTTCCTCCGTGGATCTCTCAAGGACGAGAAAGACAGGACAATAA
TGAAGCGAGCTGAGTCGCCCCTGGGGGCGCTCCGTGAGCTGAAGGGGTTG
TACGACCCAGAATCGTCCATGCAGCCTGCGGATGAGTTAAAATCCCTGAC
ATCCAAGAAGATCCCGATGGCAGAGAATCCGCAACATGCTCTCAACAGTA
TGCTCGCCACCGCAGCGTCCATTTCGAAACGGGGGCTTGATGTTAACGAA
ACGTTCGTTTTGCACCTCCTCTTGGATGCCCTCTCCAACGAGCGCTATGA
CCAAGCACGCCCTCAGACACAAGGAGAGGTGAAGGCGGGGAAAGGCAAGG
GCGGTCGCGGCGCCGAGCAGGCCTACCTCGCCGATGGAGGCGGCCGCCGT
GGGCGGTCGTCGTGGCGTGGGGGCGGCCGCCGAGGGCGGTCGTCCTGGCG
TGGTCGTGGCGGTGGCCGCAGCGGCGGCCGCGGGGGCGGCGACAGCAGCG
GAAAAGGCAGTGGCGGCGTCGAGGAGAGCAAGGGGAGTGGCTCTGGTGGG
GCAGATGGCGGCGGTACCGGGGACAAGAAGTTCCCGGGCCGGTGCTTCAC
GTGTGGCTGTTTCGGACACACGCAGCAGGACTGCACCACCAAGGAGAGCG
ACTACCTCCCGCAGTGCTCACACTGCGCAGGATGGGGTCACAGCAAGGAC
AAGTGCGCGACGGAGGAGGCCGTCCTGGCGCAGATCGTCGATGCCGACAG
CAACGCCGACTCCGTCGACAACCAGGCCTTCTGCGCGGCGCCGGGCCTGC
CAGGCGAGTGTGGTGCTGTTGCCCTAGGTCTAGTGGGGGTAGCGGAACTA
GGCCAGGATGTCATGGTGTGCGTGGCTGATACAGCAGCCACGTGCTCCAT
GTTCCGATGCGCAAACGCGTTCGTGAACTACCGCGAGTGTAGTGGTTGGG
TCAAGGGGATCGGAGGCAACAAGGCCCCCGTACCTCTCCTAGGGTACGGA
GACGTGACCGTAGTCTTTCTGACCGAAGGCGGTAGGGTACCAGTGCTAAT
CCTGAACGCCGCTCATGTGCCCGAGACCCCCCCACAACCTTCTCTCACTG
TCGGCGTTGGCCGAGGAAGGCCACACGTATTCCGGCCAGAAGGGGGGGCT
GACTCTCACTACGAGAGCCGGGGGGCAGGTGTGGTTCCCCCGGACGGGTA
AGCTGCTAACTCAAGAAGGCTATCAAATCGAGCCGAAGGTAGACATCGCC
TGTGCCGCAACAATTGTTCCTGGCGATGCGAAAGCAGCCACCCCCACTGA
CCTCAACTACTACCACAATTCGCACGGCCACACGCACGAGGAACTGCTCC
AGAAAACGGCGAAACAGCAAGGAGTGCAGCTGACGGGAGGACCGCTGCTA
CCATGCCTTGGCTGTTCGATGTCCAAGGGGCAGGTGAAGCCCAACTCAAA
GAGCACGGACACACGCGCAGATAAGAAATTATTCCGCCTCTTTTTCGATT
TGGGGGGGAGGATGCAGTTCAAAAGCATTGGTGGCAACTGGTACACCCTC
ATCATCCGAGATGATTGCACCCGCTGGACACGTGTTTTCTTTCTGAAGCA
CAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

protein sequence of EsuBft1076_8a-0001

>EsuBft1076_8 ID=EsuBft1076_8|Name=EsuBft1076_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=616bp
MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEFSSLTQQMGQLVQLIGGLA
ARIEEKSGGATEGAAESGGAVESVATSTAGHFGTVQYDGSAQAADLRRES
GPSGRHSGEVGGSDPQEARVAAAHNQACFSSAMGSGAAVFGSASVGYQSV
KYTAPTFSGDAKSFSSWLEDFLMAANTENLLELFEEGGAEIPVNSGQSKV
QLSRFYPHDKVELAFHAWNFLRGSLKDEKDRTIMKRAESPLGALRELKGL
YDPESSMQPADELKSLTSKKIPMAENPQHALNSMLATAASISKRGLDVNE
TFVLHLLLDALSNERYDQARPQTQGEVKAGKGKGGRGAEQAYLADGGGRR
GRSSWRGGGRRGRSSWRGRGGGRSGGRGGGDSSGKGSGGVEESKGSGSGG
ADGGGTGDKKFPGRCFTCGCFGHTQQDCTTKESDYLPQCSHCAGWGHSKD
KCATEEAVLAQIVDADSNADSVDNQAFCAAPGLPGECGAVALGLVGVAEL
GQDVMVCVADTAATCSMFRCANAFVNYRECSGWVKGIGGNKAPVPLLGYG
DVTVVFLTEGGRVPVLILNAAHVPETPPQPSLTVGVGRGRPHVFRPEGGA
DSHYESRGAGVVPPDG

mRNA from alignment at Scaffold_211:129392..132000-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1076_8a-0001 ID=EsuBft1076_8a-0001|Name=EsuBft1076_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2609bp|location=Sequence derived from alignment at Scaffold_211:129392..132000- (Ectocarpus subulatus male Bft15b)
ATGGCGGGCCGCAGAACCGGAGGGACCACTCCGGACGGCTCGCAGGCAGG
AGACACAAATAGCAGCGAGCAGATCGACAGCATGCGGTCTGAGTTCAGTT
CGCTGACACAGCAAATGGGCCAGCTGGTGCAGCTGATCGGAGGACTTGCT
GCACGTATAGAGGAGAAGTCCGGCGGTGCCACGGAGGGCGCCGCTGAAAG
CGGCGGCGCCGTGGAGAGCGTCGCCACAAGCACTGCAGGTCATTTTGGGA
CCGTGCAGTACGACGGGAGCGCGCAGGCAGCGGACCTGCGAAGAGAGTCT
GGTCCTTCGGGACGACACAGCGGCGAAGTAGGGGGTTCAGACCCCCAAGA
GGCGAGAGTAGCCGCTGCTCACAATCAAGCTTGTTTCAGCAGCGCCATGG
GAAGTGGTGCTGCTGTCTTCGGTAGTGCGAGCGTGGGATACCAAAGCGTG
AAGTACACAGCGCCCACGTTCAGCGGAGACGCCAAGAGCTTTTCTTCGTG
GCTAGAGGATTTTTTGATGGCAGCGAACACAGAAAACCTTCTTGAGCTTT
TCGAGGAGGGGGGGGCGGAGATCCCCGTAAACAGTGGGCAGAGCAAAGTC
CAACTGTCCAGGTTTTACCCGCACGACAAAGTAGAGCTCGCTTTCCACGC
GTGGAATTTCCTCCGTGGATCTCTCAAGGACGAGAAAGACAGGACAATAA
TGAAGCGAGCTGAGTCGCCCCTGGGGGCGCTCCGTGAGCTGAAGGGGTTG
TACGACCCAGAATCGTCCATGCAGCCTGCGGATGAGTTAAAATCCCTGAC
ATCCAAGAAGATCCCGATGGCAGAGAATCCGCAACATGCTCTCAACAGTA
TGCTCGCCACCGCAGCGTCCATTTCGAAACGGGGGCTTGATGTTAACGAA
ACGTTCGTTTTGCACCTCCTCTTGGATGCCCTCTCCAACGAGCGCTATGA
CCAAGCACGCCCTCAGACACAAGGAGAGGTTGACAAGGAGTGACGTCCTG
AAGGAGGTCACCATCGAATATCGATCGATCATGGAGAAGGTGAAGGCGGG
GAAAGGCAAGGGCGGTCGCGGCGCCGAGCAGGCCTACCTCGCCGATGGAG
GCGGCCGCCGTGGGCGGTCGTCGTGGCGTGGGGGCGGCCGCCGAGGGCGG
TCGTCCTGGCGTGGTCGTGGCGGTGGCCGCAGCGGCGGCCGCGGGGGCGG
CGACAGCAGCGGAAAAGGCAGTGGCGGCGTCGAGGAGAGCAAGGGGAGTG
GCTCTGGTGGGGCAGATGGCGGCGGTACCGGGGACAAGAAGTTCCCGGGC
CGGTGCTTCACGTGTGGCTGTTTCGGACACACGCAGCAGGACTGCACCAC
CAAGGAGAGCGACTACCTCCCGCAGTGCTCACACTGCGCAGGATGGGGTC
ACAGCAAGGACAAGTGCGCGACGGAGGAGGCCGTCCTGGCGCAGATCGTC
GATGCCGACAGCAACGCCGACTCCGTCGACAACCAGGCCTTCTGCGCGGC
GCCGGGCCTGCCAGGCGAGTGTGGTGCTGTTGCCCTAGGTCTAGTGGGGG
TAGCGGAACTAGGCCAGGATGTCATGGTGTGCGTGGCTGATACAGCAGCC
ACGTGCTCCATGTTCCGATGCGCAAACGCGTTCGTGAACTACCGCGAGTG
TAGTGGTTGGGTCAAGGGGATCGGAGGCAACAAGGCCCCCGTACCTCTCC
TAGGGTACGGAGACGTGACCGTAGTCTTTCTGACCGAAGGCGGTAGGGTA
CCAGTGCTAATCCTGAACGCCGCTCATGTGCCCGAGACCCCCCCACAACC
TTCTCTCACTGTCGGCGTTGGCCGAGGAAGGCCACACGTATTCCGGCCAG
AAGGGGGGGCTGACTCTCACTACGAGAGCCGGGGGGCAGGTGTGGTTCCC
CCGGACGGGTAAGCTGCTAACTCAAGAAGGCTATCAAATCGAGCCGAAGG
TAGACATCGCCTGTGCCGCAACAATTGTTCCTGGCGATGCGAAAGCAGCC
ACCCCCACTGACCTCAACTACTACCACAATTCGCACGGCCACACGCACGA
GGAACTGCTCCAGAAAACGGCGAAACAGCAAGGAGTGCAGCTGACGGGAG
GACCGCTGCTACCATGCCTTGGCTGTTCGATGTCCAAGGGGCAGGTGAAG
CCCAACTCAAAGAGCACGGACACACGCGCAGATAAGAAATTATTCCGCCT
CTTTTTCGATTTGGGGGGGAGGATGCAGTTCAAAAGCATTGGTGGCAACT
GGTACACCCTCATCATCCGAGATGATTGCACCCGCTGGACACGTGTTTTC
TTTCTGAAGCACAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNN

Coding sequence (CDS) from alignment at Scaffold_211:129392..132000-

>EsuBft1076_8a-0001 ID=EsuBft1076_8a-0001|Name=EsuBft1076_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1851bp|location=Sequence derived from alignment at Scaffold_211:129392..132000- (Ectocarpus subulatus male Bft15b)
ATGGCGGGCCGCAGAACCGGAGGGACCACTCCGGACGGCTCGCAGGCAGG
AGACACAAATAGCAGCGAGCAGATCGACAGCATGCGGTCTGAGTTCAGTT
CGCTGACACAGCAAATGGGCCAGCTGGTGCAGCTGATCGGAGGACTTGCT
GCACGTATAGAGGAGAAGTCCGGCGGTGCCACGGAGGGCGCCGCTGAAAG
CGGCGGCGCCGTGGAGAGCGTCGCCACAAGCACTGCAGGTCATTTTGGGA
CCGTGCAGTACGACGGGAGCGCGCAGGCAGCGGACCTGCGAAGAGAGTCT
GGTCCTTCGGGACGACACAGCGGCGAAGTAGGGGGTTCAGACCCCCAAGA
GGCGAGAGTAGCCGCTGCTCACAATCAAGCTTGTTTCAGCAGCGCCATGG
GAAGTGGTGCTGCTGTCTTCGGTAGTGCGAGCGTGGGATACCAAAGCGTG
AAGTACACAGCGCCCACGTTCAGCGGAGACGCCAAGAGCTTTTCTTCGTG
GCTAGAGGATTTTTTGATGGCAGCGAACACAGAAAACCTTCTTGAGCTTT
TCGAGGAGGGGGGGGCGGAGATCCCCGTAAACAGTGGGCAGAGCAAAGTC
CAACTGTCCAGGTTTTACCCGCACGACAAAGTAGAGCTCGCTTTCCACGC
GTGGAATTTCCTCCGTGGATCTCTCAAGGACGAGAAAGACAGGACAATAA
TGAAGCGAGCTGAGTCGCCCCTGGGGGCGCTCCGTGAGCTGAAGGGGTTG
TACGACCCAGAATCGTCCATGCAGCCTGCGGATGAGTTAAAATCCCTGAC
ATCCAAGAAGATCCCGATGGCAGAGAATCCGCAACATGCTCTCAACAGTA
TGCTCGCCACCGCAGCGTCCATTTCGAAACGGGGGCTTGATGTTAACGAA
ACGTTCGTTTTGCACCTCCTCTTGGATGCCCTCTCCAACGAGCGCTATGA
CCAAGCACGCCCTCAGACACAAGGAGAGGTGAAGGCGGGGAAAGGCAAGG
GCGGTCGCGGCGCCGAGCAGGCCTACCTCGCCGATGGAGGCGGCCGCCGT
GGGCGGTCGTCGTGGCGTGGGGGCGGCCGCCGAGGGCGGTCGTCCTGGCG
TGGTCGTGGCGGTGGCCGCAGCGGCGGCCGCGGGGGCGGCGACAGCAGCG
GAAAAGGCAGTGGCGGCGTCGAGGAGAGCAAGGGGAGTGGCTCTGGTGGG
GCAGATGGCGGCGGTACCGGGGACAAGAAGTTCCCGGGCCGGTGCTTCAC
GTGTGGCTGTTTCGGACACACGCAGCAGGACTGCACCACCAAGGAGAGCG
ACTACCTCCCGCAGTGCTCACACTGCGCAGGATGGGGTCACAGCAAGGAC
AAGTGCGCGACGGAGGAGGCCGTCCTGGCGCAGATCGTCGATGCCGACAG
CAACGCCGACTCCGTCGACAACCAGGCCTTCTGCGCGGCGCCGGGCCTGC
CAGGCGAGTGTGGTGCTGTTGCCCTAGGTCTAGTGGGGGTAGCGGAACTA
GGCCAGGATGTCATGGTGTGCGTGGCTGATACAGCAGCCACGTGCTCCAT
GTTCCGATGCGCAAACGCGTTCGTGAACTACCGCGAGTGTAGTGGTTGGG
TCAAGGGGATCGGAGGCAACAAGGCCCCCGTACCTCTCCTAGGGTACGGA
GACGTGACCGTAGTCTTTCTGACCGAAGGCGGTAGGGTACCAGTGCTAAT
CCTGAACGCCGCTCATGTGCCCGAGACCCCCCCACAACCTTCTCTCACTG
TCGGCGTTGGCCGAGGAAGGCCACACGTATTCCGGCCAGAAGGGGGGGCT
GACTCTCACTACGAGAGCCGGGGGGCAGGTGTGGTTCCCCCGGACGGGTA
A