EsuBft1076_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1076_7a-0001
Unique NameEsuBft1076_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_211contigScaffold_211:115496..116177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
SymbolMEP24
StatusManually annotated
Seed ortholog2880.D8LC73
ProteomeIdEsuBft1076_7
Protein domainsIPR011050
Protein domainsPF13229
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length27
Hectar predicted targeting categoryother localisation
Evalue9.85e-17
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
Date last modified2016-08-11
Date creation2016-06-14
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
DescriptionMannuronan C5-Epimerase, fragment
Descriptionprotein xylosyltransferase activity
COG categoryU
BRITEko00000,ko00001
NoteMannuronan C-5-epimerases catalyse the epimerization of D-mannuronic residues into L-guluronic residues within the polymer chain of alginate, the major matrix component of brown algal cell walls.
NoteHerve C., annotator
Cross References
External references for this mRNA
DatabaseAccession
PMID27026155
EC5.1.3.37
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1076_7aEsuBft1076_7aEctocarpus subulatus male Bft15bgeneScaffold_211 115496..116177 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1076_7a-0001-exonEsuBft1076_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_211 115496..115636 -
EsuBft1076_7a-0001-exonagat-exon-57783Ectocarpus subulatus male Bft15bexonScaffold_211 116040..116177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1076_7a-0001-cdsEsuBft1076_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_211 115496..115636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1076_7a-0001EsuBft1076_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_211 115496..116177 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1076_7a-0001 ID=EsuBft1076_7a-0001|Name=EsuBft1076_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=279bp|location=Sequence derived from alignment at Scaffold_211:115496..116177- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGACACAGGCATGGCTCTGCTGGAATCGATAAACGCGGACATCTA
CAATAACGAGTTCTCCAGTGTTAAGTTCGGCATCCGCTTGAGCTTGGGCT
CATCCGATAACCACGTGCACGAGAACCTCTTCGAAGAGGGGTCCGACGAA
CCGACCGACGGGGTCAGCGACGGCCACCCCAGCGATAACTTGTTCGGGAA
CAAGAGGATCTTGAACGCAGCCAAAGGCGTTAAGATCAAGGAGGGGGACG
ACGCAGTGATCACCGGTGAGAATGAGTAG
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protein sequence of EsuBft1076_7a-0001

>EsuBft1076_7 ID=EsuBft1076_7|Name=EsuBft1076_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=92bp
MQDTGMALLESINADIYNNEFSSVKFGIRLSLGSSDNHVHENLFEEGSDE
PTDGVSDGHPSDNLFGNKRILNAAKGVKIKEGDDAVITGENE
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mRNA from alignment at Scaffold_211:115496..116177-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1076_7a-0001 ID=EsuBft1076_7a-0001|Name=EsuBft1076_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=682bp|location=Sequence derived from alignment at Scaffold_211:115496..116177- (Ectocarpus subulatus male Bft15b)
ATGCAGGACACAGGCATGGCTCTGCTGGAATCGATAAACGCGGACATCTA
CAATAACGAGTTCTCCAGTGTTAAGTTCGGCATCCGCTTGAGCTTGGGCT
CATCCGATAACCACGTGCACGAGAACCTCTTCGAAGAGGTATCGACACGT
GAGCGCAAATATCGCTTCGCCATTGTAGGGCTGATTGGCCCACCGCAAGG
TTTAGTTGGTCATTGACACGGTACAGGACAGATGTACAACAATGATCGAG
GAGCACCCGAAATCTCCATGCCCAAATTCCCTAGCGCAGCACCGATTACT
TTCGCTTGTTGAGCTATTTTTCTTGGAAGTTGAATGTCAAGTGCAGCAGC
AGATGGCATGTTTTGATATGCATGGGACTTAGGGCAAGTCCGAATTACCA
CTGCATGTTCGCATTTCTTTTCAATCCCTTCGACACACACCTCGGCCGAC
CTTGCCACGACCTTCTCGCGTTCATTCTTCTTGCTGTCTCGCTGCGTTGG
ATTGTGTCTTGCTTGAGTTAAAGCGCCAGAACACGTACCAGGGGTCCGAC
GAACCGACCGACGGGGTCAGCGACGGCCACCCCAGCGATAACTTGTTCGG
GAACAAGAGGATCTTGAACGCAGCCAAAGGCGTTAAGATCAAGGAGGGGG
ACGACGCAGTGATCACCGGTGAGAATGAGTAG
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Coding sequence (CDS) from alignment at Scaffold_211:115496..116177-

>EsuBft1076_7a-0001 ID=EsuBft1076_7a-0001|Name=EsuBft1076_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=279bp|location=Sequence derived from alignment at Scaffold_211:115496..116177- (Ectocarpus subulatus male Bft15b)
ATGCAGGACACAGGCATGGCTCTGCTGGAATCGATAAACGCGGACATCTA
CAATAACGAGTTCTCCAGTGTTAAGTTCGGCATCCGCTTGAGCTTGGGCT
CATCCGATAACCACGTGCACGAGAACCTCTTCGAAGAGGGGTCCGACGAA
CCGACCGACGGGGTCAGCGACGGCCACCCCAGCGATAACTTGTTCGGGAA
CAAGAGGATCTTGAACGCAGCCAAAGGCGTTAAGATCAAGGAGGGGGACG
ACGCAGTGATCACCGGTGAGAATGAGTAG
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