EsuBft1076_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1076_5a-0001
Unique NameEsuBft1076_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_211contigScaffold_211:104402..106416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LRM6
ProteomeIdEsuBft1076_5
Protein domainsIPR001372
Protein domainsSSF54648
Ownerapollo_admin@sb-roscoff.fr
Notedynein light chain cytoplasmic os:caenorhabditis elegans gn:dlc-1 pe:1 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length431
Hectar predicted targeting categoryother localisation
Evalue9.75e-59
EggNOG OGsKOG3430@1|root,KOG3430@2759|Eukaryota
Ec32 ortholog descriptionDynein light chain, type 1/2
Ec32 orthologEc-12_000380.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Descriptionpositive regulation of ATP-dependent microtubule motor activity, plus-end-directed
COG categoryS
BRITEko00000,ko00001,ko04812
Cross References
External references for this mRNA
DatabaseAccession
GO0008092
GO0051017
GO0031323
GO0051959
GO0043086
GO0006809
GO0034454
GO0048477
GO1900740
GO0000132
GO0030235
GO0008407
GO0045505
GO0005868
GO0002119
GO0004857
GO0007476
GO0005829
GO0017111
GO0040011
GO0042133
GO0035046
GO0006260
GO0009792
GO0019899
GO0040035
GO0007291
GO0007290
GO0016459
GO0006914
GO0097193
GO0006898
EC3.6.1.15
GO0055085
GO0042803
GO0005515
GO0008039
GO0035071
GO0005814
GO0040020
GO0043652
GO0019886
GO0010171
GO0042127
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1076_5aEsuBft1076_5aEctocarpus subulatus male Bft15bgeneScaffold_211 104402..106416 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1076_5a-0001-exonagat-exon-57780Ectocarpus subulatus male Bft15bexonScaffold_211 104402..104677 -
EsuBft1076_5a-0001-exonEsuBft1076_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_211 105581..105684 -
EsuBft1076_5a-0001-exonagat-exon-57779Ectocarpus subulatus male Bft15bexonScaffold_211 106366..106416 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1076_5a-0001-exonagat-three_prime_utr-721Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_211 104402..104565 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1076_5a-0001-cdsEsuBft1076_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_211 104566..104677 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1076_5a-0001EsuBft1076_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_211 104566..106416 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1076_5a-0001 ID=EsuBft1076_5a-0001|Name=EsuBft1076_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=431bp|location=Sequence derived from alignment at Scaffold_211:104402..106416- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCCAGACCCGTTATCAAGACGAGCACAATGGCACCAGATATGCA
GGAGGCTGCGATCCAGGTCGCCCAGGACGCTATTCGCGACAATAATTTGG
AGAAGGACATTGCAAACGCGGTGAAGGCTGCATTTGAAGGCCTTTATCCC
TCGCTGTGGCACTGCTTTGTCGGCAGGAATTTTGGATGCTTCGTCACGCA
TGAGCACACAAAGTTTGTGTACTTGTACATCGGGCAAATCGGCGTATGCC
TTTTCTCCACCGCATGACCACGAGAGGTCGCCATATCCCCTCTAGCCGCA
TCTAGAGTTCTCGCGACGGGTCTTCTGCAGGAAGGTCTCGAGATTATCAG
CAATGGGCCAAGGCGAAAGCTTGGCAAGCGTTACCACGTGCTAGTCAAAG
GAGCACACGAAGGAAAAGAGAGGTCTAAGTC
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protein sequence of EsuBft1076_5a-0001

>EsuBft1076_5 ID=EsuBft1076_5|Name=EsuBft1076_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=88bp
MSARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYP
SLWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFSTA
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mRNA from alignment at Scaffold_211:104402..106416-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1076_5a-0001 ID=EsuBft1076_5a-0001|Name=EsuBft1076_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2015bp|location=Sequence derived from alignment at Scaffold_211:104402..106416- (Ectocarpus subulatus male Bft15b)
ATGTCTGCCAGACCCGTTATCAAGACGAGCACAATGGCACCAGATATGCA
GGTAACGACCAACTTACGCACAACGTACACGGCAGGACACAGCTGTATTC
AAGATAGGTTTTCTTCCGACGAGAAGTTGGGGTGGTGTTGACGAATGCCG
ATCGCAATGAGAGTGCAAAATAATCATTTCCACGTACACAGGTCGGTATC
AAGTAGTGGGTCAAATTGCTTATCATACCACTCCCTCGAACTAATCATGC
AACACATTCAAGCGGGATCAATGCCGACAAATCGCCGCTTCACACCACGG
GAATGGACCGCGTCGAGTGTTGTATCAGTACGGACATACCAAGGTACTGG
GTAGAGAGAGATCGGAACGGTTTTTAATGTGAAGAAAATAACAACCTCGG
CAATGGCGCAGCGGCCGGAGTATGATTGAACGTAGTGGAACACGTGCATA
GCTGCTCGTACTTGTCAAGGGTTGTTCTGCACCGATATGATTACTGCGAC
TGTGTACGATTTTTATGTAGACTATACTCTGCGCGTGTGCTGTCCCTTTT
TTTCAGCCATCGACGACATTCCCAACGGCAGATTGCTGCTGTCCGTTTAA
TTAAGTCCCTAAACGTGCATGTTTAACCTACAAGAAGCCACTCCCAGAGA
GGGTGCATGTTGTCGCTGGTTCCCTACTAGCGCGTATAATGGCATATCGC
TCGGCTAACCATACGAGTCCGCGGTGAAACAGGAGGCTGCGATCCAGGTC
GCCCAGGACGCTATTCGCGACAATAATTTGGAGAAGGACATTGCAAACGC
GGTGAAGGCTGCATTTGAAGGCCTTTATCCCTCGCTGTAAGTACGTGTAG
CACACAAGCCCGCACCTTTTTGCAACACGCAAGATCCTGAATACGGGTAT
CTTTGGAGGGGATGCCGCGGGGGAAAGAGGGAACAGCTTTGTTGAGTGCG
TGGCGTTTGCGAAATGAGAAAAGAAAAACAGGGGTCTGACACATCATGGT
CTCCTCAAGGTGTCTACCCCTGCAGTTAGGTGGTTGTACTGATCACATGT
AATCGGTACTGTCAAATCCCGTAGAAACTCGTGTGGGTGCGGGTTTACCA
TTATCGCGCGTCATCGAGCAGTACCGAATGCGCGTGAAGGTTGAACAACT
TTATTCTCGACGACAGAGTTCCGACCCCTCGATTAGAGGCTCCACAAGTG
ACGACTTTTTTGAGATCAGTATTGCAGGAGACTGAGCTCCTGCAAACTGA
AAACACGTTCAGTCCACAGGCGGAGCACATGCGCCGGAAAGTCATGTATA
CATGTAGGAATGAAACCCTTCAACATAGTCTATTGGGCTGTTTGAAATTC
TCCTCCTTGCCTGCAGTAGTCTCGCCTTCGAACCCGGTCGGATGGCCAAA
GTTTCGGGCTCATAGATCGACGTGGCGCTGGCTTGAATTTGGTGTTCGAA
AGGGTGGCAAACTCGGCTTCATGGCCCGCAAGTAGTGATGGAACAATTAC
TTCTCACGAGATTATTGGCCACATTGCGCGGAGGAATTCCTCTGTGACTT
GACGGCCCGTCGCTACTCAGTACTTCGAAGTAGTACCGAAGGAAGGATTA
CACCGCAAGCGACATACAGCACGGCCGAGATAGTTATAGACAGAATGGTA
AGACAAATGAAAAATGCCAACAGCGCACAAATGTTGCTTCGAGAATTGCC
TTTTCACACACACACATACCCCATATCCATGACCAACAGGTGGCACTGCT
TTGTCGGCAGGAATTTTGGATGCTTCGTCACGCATGAGCACACAAAGTTT
GTGTACTTGTACATCGGGCAAATCGGCGTATGCCTTTTCTCCACCGCATG
ACCACGAGAGGTCGCCATATCCCCTCTAGCCGCATCTAGAGTTCTCGCGA
CGGGTCTTCTGCAGGAAGGTCTCGAGATTATCAGCAATGGGCCAAGGCGA
AAGCTTGGCAAGCGTTACCACGTGCTAGTCAAAGGAGCACACGAAGGAAA
AGAGAGGTCTAAGTC
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Coding sequence (CDS) from alignment at Scaffold_211:104402..106416-

>EsuBft1076_5a-0001 ID=EsuBft1076_5a-0001|Name=EsuBft1076_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=267bp|location=Sequence derived from alignment at Scaffold_211:104402..106416- (Ectocarpus subulatus male Bft15b)
ATGTCTGCCAGACCCGTTATCAAGACGAGCACAATGGCACCAGATATGCA
GGAGGCTGCGATCCAGGTCGCCCAGGACGCTATTCGCGACAATAATTTGG
AGAAGGACATTGCAAACGCGGTGAAGGCTGCATTTGAAGGCCTTTATCCC
TCGCTGTGGCACTGCTTTGTCGGCAGGAATTTTGGATGCTTCGTCACGCA
TGAGCACACAAAGTTTGTGTACTTGTACATCGGGCAAATCGGCGTATGCC
TTTTCTCCACCGCATGA
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