EsuBft1076_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1076_10a-0001
Unique Name	EsuBft1076_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_211	contig	Scaffold_211:143200..152641 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1076_10
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	150
Hectar predicted targeting category	signal peptide
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1076_10a	EsuBft1076_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_211 143200..152641 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1076_10a-0001	EsuBft1076_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_211 145752..146486 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1076_10a-0001-exon	agat-exon-57795	Ectocarpus subulatus male Bft15b	exon	Scaffold_211 143200..143461 -
EsuBft1076_10a-0001-exon	EsuBft1076_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_211 144258..144908 -
EsuBft1076_10a-0001-exon	agat-exon-57793	Ectocarpus subulatus male Bft15b	exon	Scaffold_211 145581..145787 -
EsuBft1076_10a-0001-exon	agat-exon-57794	Ectocarpus subulatus male Bft15b	exon	Scaffold_211 146442..146540 -
EsuBft1076_10a-0001-exon	agat-exon-57792	Ectocarpus subulatus male Bft15b	exon	Scaffold_211 152361..152641 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1076_10a-0001-exon	agat-three_prime_utr-712	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_211 143200..143461 -
EsuBft1076_10a-0001-exon	agat-three_prime_utr-713	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_211 144258..144908 -
EsuBft1076_10a-0001-exon	agat-three_prime_utr-714	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_211 145581..145751 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1076_10a-0001-cds	EsuBft1076_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_211 145752..145787 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1076_10a-0001-exon	agat-five_prime_utr-445	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_211 146487..146540 -
EsuBft1076_10a-0001-exon	agat-five_prime_utr-446	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_211 152361..152641 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_211:143200..152641-
coding sequence from alignment at Scaffold_211:143200..152641-

spliced messenger RNA

>EsuBft1076_10a-0001 ID=EsuBft1076_10a-0001|Name=EsuBft1076_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1500bp|location=Sequence derived from alignment at Scaffold_211:143200..152641- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTTTTGTTTTGTTGTTGAGATGAGACACAAGCGCGCCTTCGCCCCTTGT
GCTCACTCTCATCTAGCACCCATCAAAGCCTGACCAGGGAGTCAGTTGAT
AAGAACATCTATCTGCATTTCTCTTTCCAAAGCTCGCTCGGGCCTACCGA
TTTCACAGCAGTGTAGACCAACCTCTGTGATAGAGCGGTGACAGCAGTGT
AACCTCTGTGGTAGACTACAAAGTCTACGAGCTACAGCGGCACCGCCACC
TCCGCTGCTGCAAGACGCCACATTCTGTGAGGTGTCAGCGGAGCTCGCAG
GGTCCGCCCACGCCCTGTGATTCTCCGACCGCAATATGGGCTTCTTCAAA
CTGTTTGGATCGGTGCTGCTTTCGATCGAGCCCAGAACACATGCAGCAAC
GGCCTCATTGGGGTAGAATGAGATGGAATCTGCTGCAACGTCGACTGCGG
CACGTGCGGTGGGAGCGACTGTCAAGACAGAGGAAACGGCCTCGAAGCCG
GCGACTGCTGCAGAAACTATATCACCAATCATGGAGCCCTGTGCTCGGAG
AAAGCTGCTGCACCTTGCATCATTGATGACTTGAACGTTGCCGCGATTTC
TCTCGGCCGCCACAGATGGGGTGGGTGAACCACTCAACACGCCTGTACCG
TCAAGACACATCGACCTCTGCTGGGTTTGAAGTTGACGTTGGGGTTGACT
ACATGAATGGTGGTGTAGATTACCTCACGTATTTATCCACGTGAAACAAC
CCTAGGTTTGCTGCTTCCTATTGAGGAAAGGTGTGAGCTTGTGAATCCTG
AACAATGCTCTATAAATGCGTGGGGGTGTATGGAGATGAAGCAAGCAACT
GGAACTGAAACAAATTCTGCCATTGTTGTCATTGTTGTGCCATCACAACT
CCCGCTTTGTTGAGACGTGGTCGTTTTAGTGAGTTACAGGACACTAGGTT
GTTAAATTTGAATATTGGAATTCACCACGACGATCATTTCGAAATAGCTG
ATGTGGTTTCGAGCAATATCCACCTCGTTATCATTGTCGCTGTCGAGGTA
CAGCATCCGTTTCGCCATTTTCTCTATGAAAAGAATATCAAATGTCACAA
CTACAAGTCATACTTCATCATCCTGGCCGAACGTTTCACTCAAGAAACAT
CGGAGGCTGACCACGACGACGCGAAGTGCAGCAACGGCTTTGTCGGGGTA
GAATCAGAGAACATCTGCTGCCATGCACACAGACTGCGGCTAACGTACCT
AGAAGAGGGATACCAAAATAAAATGGACCCCAAGGGTTAGCAGAGCGATA
AAATACAAGAAAACAAAAGAATCAGAAACAAATAATAACTCAATAGTGGA
ACGTGCGCACCACCAGCCTGGGGGGTAGCCTTCCGGAAGGACCCCAAGGG
TCAGCAGTACGTGCCAGTAAAAAAACAAAACAAAATAACACGAAATAAAC
CAAAGACAGACGAGGACATTAACAAACTCGCACAGAGACAGGGATATCCG

protein sequence of EsuBft1076_10a-0001

>EsuBft1076_10 ID=EsuBft1076_10|Name=EsuBft1076_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=26bp
MGFFKLFGSVLLSIEPRTHAATASLG

mRNA from alignment at Scaffold_211:143200..152641-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1076_10a-0001 ID=EsuBft1076_10a-0001|Name=EsuBft1076_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=9442bp|location=Sequence derived from alignment at Scaffold_211:143200..152641- (Ectocarpus subulatus male Bft15b)
GTTTTTGTTTTGTTGTTGAGATGAGACACAAGCGCGCCTTCGCCCCTTGT
GCTCACTCTCATCTAGCACCCATCAAAGCCTGACCAGGGAGTCAGTTGAT
AAGAACATCTATCTGCATTTCTCTTTCCAAAGCTCGCTCGGGCCTACCGA
TTTCACAGCAGTGTAGACCAACCTCTGTGATAGAGCGGTGACAGCAGTGT
AACCTCTGTGGTAGACTACAAAGTCTACGAGCTACAGCGGCACCGCCACC
TCCGCTGCTGCAAGACGCCACATTCTGTGAGGTTATGAGCCTCGCTTTAC
GCGAACACTAGGAGCTGCGGACGTCACGACGGAGGTCAAGACATCCTACT
ACTGCTGTGGACTACAACATCCGTCTGTGGACTTCGAGCGGAAATCTGGA
TTCGGAGATTTGGGAGATCATCAACGGTCAGCGGAAACGAAAGTGAGCGC
ACTACTTGGTCATCTACACCAAGGGGCAGAGAGTTCATTATACACACACG
TTACCACTGCTGCAATAGCAGTAGTGGGTACCTCTGTGTTGAAAAAACAG
CAAAGTGTTGCGCGGGAAGCCTCGATTTCGACATCGAGCAAATACTTCTG
CGGCGGAGACAGGAGGGAAGACTGTATCAACAGCGAAAGTCGACCGGGAA
CCGTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNGGGCCATTACTCCGGAGACCCTCGGAACCTGCTG
TGTTTTTGCTGCTTGTTTTTTGTTTTTGTTTTGTTGTTGAGATGAGACAC
AAGCGCGCCTTCGCCCCTTGTGCTCACTCTCATCTAGCACCCATCAAAGC
CTGACCAGGGAGTCAGTTGATAAGAACATCTATCTGCATTTCTCTTTCCA
AAGCTCGCTCGGGCCTACCGATCTCACAGCAGTGTAGTCCAACCTCCGTG
ATAGAGCGGTGACAGCAGTGTAACCTCTGTGGTAGACTACAAAGTCTACG
AGCTACAGCGGCACTGCCACCTCCGCTGCTGCAAGACGCCACATTCTGTG
AGATGTTATACGTAATTTACCCCTATTCCTACCTTCGTCGTGTCTTCGGG
GGCACCAACCTCTGTCTTTTGCGAGGTTTCACTTCATTTCTCTTTGCTGA
GGTTTTCCCGAAGGACAACGAGCACCGCTATGCAGATAAGAGTGTAGACT
ATATAGTATGCCTCGACGGAGAGTTCGAAAGAACGCCCCAATTCGGGAGG
GTTGGGGAACTCACGCTTGGGGATCCCCCTGAACGTGTATCGGTGAAGAG
GTGCGGGGTATCCGACATGACCCATGTCTGAAATATTCGAACAATCGTGC
ACACCCACCGGCCAGCCCATGCCTCGACTTTTGCTCCTCTTCCTTCTGCA
GGTGTCAGCGGAGCTCGCAGGGTCCGCCCACGCCCTGTGATTCTCCGACC
GCAATATGGGCTTCTTCAAACTGTTTGGATCGGTGCTGCTTTCGATCGAG
GTACGCGTTGCGGTGAATCTATTCATGCGGATTTTGTCAACAACACGCGT
TATTGTTCCGACAATAAATTGACTCAACGCGCCCACCGGCATCTCCGTTG
TTGTTGGATTGTTTCGTCAGCCTCTTTGTCTCTCCCTTCGTCTCTCGCGC
AGTATTGTTTCTGTCTAGCCATACCCATGACTTGTTTAATGTCATCGGGT
GCAATAATCTTACTCATGCACGTCCGATTCGACGAATACCCCGTCGTCGA
GGGACTCATTGTTTCCGTGTGATGATGTAGTCAAGCGTAGTCTTATTCCG
CGAAATGTTCCTCGGAAAAACACCTGTCGTTGCCTCGCCAAAACCGGTTT
TTCCTCTCCCTTTATCCAGTCGTAGTAGAATTCGATAGTCCGCTTCGTTA
GGTGGTTGATGATGAAGCTGACCTAAAGAGTATGGAAGACAACCATAGAT
TGGTTGTGCATGGATCAACAAACCTGGGGTTGGACTGTGATGGTTCCCAT
AGATACGAAAAGTGCCACTTCTTCGCACTATTATTGTGCCGCGGTCGTTG
CCTCGATACGAACGCATGTGGGTGATGATTCGACGTAGTGTGTAATAAAC
AGAACGACACCCATCCCCTGCGATATGTACATTTCCTGGTGGACGAACGC
GTAGCCCAGAACACATGCAGCAACGGCCTCATTGGGGTAGAATGAGATGG
AATCTGCTGCAACGTCGACTGCGGCACGTGCGGTGGGAGCGACTGTCAAG
ACAGAGGAAACGGCCTCGAAGCCGGCGACTGCTGCAGAAACTATATCACC
AATCATGGAGCCCTGTGCTCGGAGAAAGCTGCTGCACCTTGCATCATTGA
TGACTTGAACGGTGAGTAGGGCCGGTGTAATGGCCTCAGCAGTACATATG
TCGAAGCGAAACGACACATAACAGGGGTGATTTCCGTTCGTGCTTGCTAC
TGTAGCCCAAATATCAATATTATATCACACATCCCAAGAGGACTACATGT
AGAAGGGACGACCCAACGACGACGTTCCCGGCGGAAGCAGTCTTTGCTCG
CTGTGACACACACAGCAGTTGGTAAATGCCACGTGTCATTCCCTACTCCA
AAATCCTGCCGTATGCATTCACAGCCTGCACCCTTCACGGTGTGCGCTGA
AGACGGGCTGAATCGTGATTATACTGTTAGTTTTTGTCTTTCGGCAGTCA
TAGCGTGAAGCCCCTGGTTTCATGTCCAGACGATCTTGGGCCCTTACTAA
AACACACGAAGGGTGCACCCGATTTGATAACTTTCCCTTAAAATAACCAC
TTGCTTGGTGGTGTACCAGCTCTCGCAAGACGCAGTATTCCTTAAGGTGA
CCTTCAGGATCAGACCAAGTGCTCTCCCGTCTGAGCTCTGTACATTAACC
TTAAGCATGTAGTGTGACCCCGTGCGTTTGTGGGGACGAATGACAAGCGC
CACTAGACCGCTCTGCTCTCAACGCCTTAAAACACATCTCCTCACGCCTG
GACACCGACGTTTCCCTGTTGTGTCTCTCGCAGTTGCCGCGATTTCTCTC
GGCCGCCACAGATGGGGTGGGTGAACCACTCAACACGCCTGTACCGTCAA
GACACATCGACCTCTGCTGGGTTTGAAGTTGACGTTGGGGTTGACTACAT
GAATGGTGGTGTAGATTACCTCACGTATTTATCCACGTGAAACAACCCTA
GGTTTGCTGCTTCCTATTGAGGAAAGGTGTGAGCTTGTGAATCCTGAACA
ATGCTCTATAAATGCGTGGGGGTGTATGGAGATGAAGCAAGCAACTGGAA
CTGAAACAAATTCTGCCATTGTTGTCATTGTTGTGCCATCACAACTCCCG
CTTTGTTGAGACGTGGTCGTTTTAGTGAGTTACAGGACACTAGGTTGTTA
AATTTGAATATTGGAATTCACCACGACGATCATTTCGAAATAGCTGATGT
GGTTTCGAGCAATATCCACCTCGTTATCATTGTCGCTGTCGAGGTACAGC
ATCCGTTTCGCCATTTTCTCTATGAAAAGAATATCAAATGTCACAACTAC
AAGTCATACTTCATCATCCTGGCCGAACGTTTCACTCAAGAAACATCGGA
GGCTGACCACGACGACGCGAAGTGCAGCAACGGCTTTGTCGGGGTAGAAT
CAGAGAACATCTGCTGCCATGCACACAGACTGCGGTACGTGTGGCGGGAG
CAAACATAGAAGGAAAGGAAACGGCCCCGGCGACTGCTGTATAAACTATA
TCAGCGAGAACGGAGCCCTGTGCTCGGGGAACGGTTCTTCTGCGCCTTAC
ATCATGGATGACGTGACCGGCGAGTCGAGCCGGCCGTATGCTGACGCTAA
GACTGACAGCAGGGCTGCCGACTATGTCGTTCGTGCTGTCTTAACGCCGG
AAGATTTCTCTCTTCGAATACGACTTTGACCGTGAACTACACGCGCGACG
GAGGCCTGGCGAGCTCCGGGCATGAATATTACTGTGCCGACGAGCCTCCT
GCGTGCTCGCCCTTGAAAAGGAAGCGCGAGAATACACTCCCAGCCGGAAG
AGAGAGAAATGCCGAAGCCCAACCAATGACATAATCTTGTCCAGGGATGC
AATATATATACATACACGGTCTACCTTCGGGACGGGGGTGTCAAATCTCC
CGCGGGTGACGCAAGACACACGCGCATTGCTCGCGGAGGGCTGTGTCTTG
TTGTTGATGAACGTCTTTTTCAATAATCGCCTTCCGTACAAACACCGCGC
ACGTATGTACATAATTTTTCGACGTTGGAGCCAACTCGAGCGGACAACAA
CTTGCCCGCGAAAATCAGTCTTCTTTAATGCATATGAATACTTGTGATGA
TGGCAGAATTACAATGTTGTTGTTGTCTTCACATTTAAAACCATCCCGGT
CTCTCTATCCAGTACCTCCTCCTGTCTCAATCTCTCCGTACTAATCCAGC
ACTTGACCCGGTCAATTTCCGTGGTCACAGGCTAACGTACCTAGAAGAGG
GATACCAAAATAAAATGGACCCCAAGGGTTAGCAGAGCGATAAAATACAA
GAAAACAAAAGAATCAGAAACAAATAATAACTCAATAGTGGAACGTGCGC
ACCACCAGCCTGGGGGGTAGCCTTCCGGAAGGACCCCAAGGGTCAGCAGT
ACGTGCCAGTAAAAAAACAAAACAAAATAACACGAAATAAACCAAAGACA
GACGAGGACATTAACAAACTCGCACAGAGACAGGGATATCCG

Coding sequence (CDS) from alignment at Scaffold_211:143200..152641-

>EsuBft1076_10a-0001 ID=EsuBft1076_10a-0001|Name=EsuBft1076_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=81bp|location=Sequence derived from alignment at Scaffold_211:143200..152641- (Ectocarpus subulatus male Bft15b)
ATGGGCTTCTTCAAACTGTTTGGATCGGTGCTGCTTTCGATCGAGCCCAG
AACACATGCAGCAACGGCCTCATTGGGGTAG