EsuBft1075_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1075_5a-0001
Unique NameEsuBft1075_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_287contigScaffold_287:45996..46302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1075_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length30
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1075_5aEsuBft1075_5aEctocarpus subulatus male Bft15bgeneScaffold_287 45996..46302 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1075_5a-0001-exonEsuBft1075_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_287 45996..46302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1075_5a-0001-cdsEsuBft1075_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_287 45996..46190 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1075_5a-0001-exonagat-three_prime_utr-710Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_287 46191..46302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1075_5a-0001EsuBft1075_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_287 45996..46190 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1075_5a-0001 ID=EsuBft1075_5a-0001|Name=EsuBft1075_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=307bp|location=Sequence derived from alignment at Scaffold_287:45996..46302+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGACTACAGCGTGGAAAGATTCGGCATGGGAGTCATGGCAAAAT
CGTGCAGATGATTACGGCGGCTCTGCCGTGTGCGGTGGCTGGAGAAGAGG
AGCTTTTCCTCGTCCTGGCGGTAGTGGCAATGCGGCAACTCCAATGCGTC
CCCAACTGTAACCACGCTCCCAACTCGAACCACGCCGCCGGGTGAACTGC
TCTAACCCTGACTTCCAACCACTTGACCGCTGGTGTGACTGATGACTCGC
TACCTCCCTCAAGGGGCGGGGATGAACACGAAGTCCGCCGTAGGAGAGGC
GGCTACC
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protein sequence of EsuBft1075_5a-0001

>EsuBft1075_5 ID=EsuBft1075_5|Name=EsuBft1075_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=64bp
MARLQRGKIRHGSHGKIVQMITAALPCAVAGEEELFLVLAVVAMRQLQCV
PNCNHAPNSNHAAG
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mRNA from alignment at Scaffold_287:45996..46302+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1075_5a-0001 ID=EsuBft1075_5a-0001|Name=EsuBft1075_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=307bp|location=Sequence derived from alignment at Scaffold_287:45996..46302+ (Ectocarpus subulatus male Bft15b)
ATGGCGCGACTACAGCGTGGAAAGATTCGGCATGGGAGTCATGGCAAAAT
CGTGCAGATGATTACGGCGGCTCTGCCGTGTGCGGTGGCTGGAGAAGAGG
AGCTTTTCCTCGTCCTGGCGGTAGTGGCAATGCGGCAACTCCAATGCGTC
CCCAACTGTAACCACGCTCCCAACTCGAACCACGCCGCCGGGTGAACTGC
TCTAACCCTGACTTCCAACCACTTGACCGCTGGTGTGACTGATGACTCGC
TACCTCCCTCAAGGGGCGGGGATGAACACGAAGTCCGCCGTAGGAGAGGC
GGCTACC
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Coding sequence (CDS) from alignment at Scaffold_287:45996..46302+

>EsuBft1075_5a-0001 ID=EsuBft1075_5a-0001|Name=EsuBft1075_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=195bp|location=Sequence derived from alignment at Scaffold_287:45996..46302+ (Ectocarpus subulatus male Bft15b)
ATGGCGCGACTACAGCGTGGAAAGATTCGGCATGGGAGTCATGGCAAAAT
CGTGCAGATGATTACGGCGGCTCTGCCGTGTGCGGTGGCTGGAGAAGAGG
AGCTTTTCCTCGTCCTGGCGGTAGTGGCAATGCGGCAACTCCAATGCGTC
CCCAACTGTAACCACGCTCCCAACTCGAACCACGCCGCCGGGTGA
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