EsuBft1075_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1075_4a-0001
Unique Name	EsuBft1075_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_287	contig	Scaffold_287:49030..51547 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1075_4
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	71
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1075_4a	EsuBft1075_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_287 49030..51547 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1075_4a-0001-exon	agat-exon-7817	Ectocarpus subulatus male Bft15b	exon	Scaffold_287 49030..49153 -
EsuBft1075_4a-0001-exon	EsuBft1075_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_287 50859..50907 -
EsuBft1075_4a-0001-exon	agat-exon-7816	Ectocarpus subulatus male Bft15b	exon	Scaffold_287 51002..51547 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1075_4a-0001-cds	EsuBft1075_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_287 49030..49153 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1075_4a-0001-exon	agat-five_prime_utr-442	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_287 51381..51547 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1075_4a-0001	EsuBft1075_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_287 49030..51380 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_287:49030..51547-
coding sequence from alignment at Scaffold_287:49030..51547-

spliced messenger RNA

>EsuBft1075_4a-0001 ID=EsuBft1075_4a-0001|Name=EsuBft1075_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=719bp|location=Sequence derived from alignment at Scaffold_287:49030..51547- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCGGCCTGCTCCCCGGCCGGGGCCGAAATCGACCTAGTGAGTCCCTCGCA
GGCGAACCAGGCCACCACAGATAGTAGGCGAGTGGTGTCCCAAGGTGCAA
CTCACCGCCACGCTGGCTCAGCGTGGCGGTGAGGATGCACAGACGGTGGT
AGTGGCGAGAGGTGTGTATGGACACTGTTCACGCGGCAGTGATGCAAAGC
GGCAAACTGCACGTGGCAACCACCGTCGCGGAAAGCGTGGCCCACGAAGC
TGGAGGAGTAGAGAGATTCGTAAACACCACGTCAGTAAGCACCGCTCGCG
GGAGAAGGGAGACGACCGCGGGCACCGCGGGGAGGGAGTGCTGCACCCTC
CTCGTCAAAACACCACAGGCAAGAACCGAGCTCTGCAGAGATGGATTGAG
GCGAGGAAACTCGCCTCTCGGAAATACGGAAGAAAGCACACCCGCAACGC
GAGGTGGACCGAGAGAGACACGAGACCGCAGCGGCCGTCAAGGCAACTGC
GAAGAAGAAGGCACGAGAGGGCGACCTATCGTTCGGCACGTTCAACGACT
TCAGGAGACCCGACGGGAGGGGCAAGGTTCAATTGCACACGACGGGCAGG
AGGCGGAAGCGTCCGCAAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAA
AGTACGGCCATCTCAGGACCGAAGAGAAAGAGAGCCGGGGAAGCGGCGGT
GGGAGGGAAGAAACGGNNN

protein sequence of EsuBft1075_4a-0001

>EsuBft1075_4 ID=EsuBft1075_4|Name=EsuBft1075_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=184bp
MDTVHAAVMQSGKLHVATTVAESVAHEAGGVERFVNTTSVSTARGRRETT
AGTAGRECCTLLVKTPQARTELCRDGLRRGNSPLGNTEESTPATRGGPRE
TRDRSGRQGNCEEEGTRGRPIVRHVQRLQETRREGQGSIAHDGQEAEASA
KRQRAREAEAESTAISGPKRKRAGEAAVGGKKRX

mRNA from alignment at Scaffold_287:49030..51547-

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1075_4a-0001 ID=EsuBft1075_4a-0001|Name=EsuBft1075_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2518bp|location=Sequence derived from alignment at Scaffold_287:49030..51547- (Ectocarpus subulatus male Bft15b)
TCGGCCTGCTCCCCGGCCGGGGCCGAAATCGACCTAGTGAGTCCCTCGCA
GGCGAACCAGGCCACCACAGATAGTAGGCGAGTGGTGTCCCAAGGTGCAA
CTCACCGCCACGCTGGCTCAGCGTGGCGGTGAGGATGCACAGACGGTGGT
AGTGGCGAGAGGTGTGTATGGACACTGTTCACGCGGCAGTGATGCAAAGC
GGCAAACTGCACGTGGCAACCACCGTCGCGGAAAGCGTGGCCCACGAAGC
TGGAGGAGTAGAGAGATTCGTAAACACCACGTCAGTAAGCACCGCTCGCG
GGAGAAGGGAGACGACCGCGGGCACCGCGGGGAGGGAGTGCTGCACCCTC
CTCGTCAAAACACCACAGGCAAGAACCGAGCTCTGCAGAGATGGATTGAG
GCGAGGAAACTCGCCTCTCGGAAATACGGAAGAAAGCACACCCGCAACGC
GAGGTGGACCGAGAGAGACACGAGACCGCAGCGGCCGTCAAGGCAACTGC
GAAGAAGAAGGCACGAGAGGGCGACCTATCGTTCGGCACGTTCAACGTAC
GCACGCTCGCCTACAGTTGTAGGAACCCCATCGGTCACAACGTGATGACG
GTCATGCAGATTTGTTCGGCGACCGGCTGTGATGTGATAGGACTTCAGGA
GACCCGACGGGAGGGGCAAGGTTCAATTGCACACGACGGGTACGTGATCA
TCTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAGAGGGGCGTACANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGTAAATGGAAAGAGAGCGCCAAGGACCC
GGAGGTGTGGTAAAACAAGCATAGCTCATGAGGAAATGGCACAGGCAGGA
GGCGGAAGCGTCCGCAAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAAA
GTACGGCCATCTCAGGACCGAAGAGAAAGAGAGCCGGGGAAGCGGCGGTG
GGAGGGAAGAAACGGNNN

Coding sequence (CDS) from alignment at Scaffold_287:49030..51547-

>EsuBft1075_4a-0001 ID=EsuBft1075_4a-0001|Name=EsuBft1075_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=552bp|location=Sequence derived from alignment at Scaffold_287:49030..51547- (Ectocarpus subulatus male Bft15b)
ATGGACACTGTTCACGCGGCAGTGATGCAAAGCGGCAAACTGCACGTGGC
AACCACCGTCGCGGAAAGCGTGGCCCACGAAGCTGGAGGAGTAGAGAGAT
TCGTAAACACCACGTCAGTAAGCACCGCTCGCGGGAGAAGGGAGACGACC
GCGGGCACCGCGGGGAGGGAGTGCTGCACCCTCCTCGTCAAAACACCACA
GGCAAGAACCGAGCTCTGCAGAGATGGATTGAGGCGAGGAAACTCGCCTC
TCGGAAATACGGAAGAAAGCACACCCGCAACGCGAGGTGGACCGAGAGAG
ACACGAGACCGCAGCGGCCGTCAAGGCAACTGCGAAGAAGAAGGCACGAG
AGGGCGACCTATCGTTCGGCACGTTCAACGACTTCAGGAGACCCGACGGG
AGGGGCAAGGTTCAATTGCACACGACGGGCAGGAGGCGGAAGCGTCCGCA
AAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAAAGTACGGCCATCTCAGG
ACCGAAGAGAAAGAGAGCCGGGGAAGCGGCGGTGGGAGGGAAGAAACGGN
NN