EsuBft1075_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1075_2a-0001
Unique NameEsuBft1075_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_287contigScaffold_287:70620..75166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1075_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length153
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1075_2aEsuBft1075_2aEctocarpus subulatus male Bft15bgeneScaffold_287 70620..75166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1075_2a-0001EsuBft1075_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_287 70741..72197 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1075_2a-0001-exonEsuBft1075_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_287 70620..70767 +
EsuBft1075_2a-0001-exonagat-exon-7795Ectocarpus subulatus male Bft15bexonScaffold_287 71588..71773 +
EsuBft1075_2a-0001-exonagat-exon-7794Ectocarpus subulatus male Bft15bexonScaffold_287 72129..72409 +
EsuBft1075_2a-0001-exonagat-exon-7793Ectocarpus subulatus male Bft15bexonScaffold_287 74243..75166 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1075_2a-0001-exonagat-five_prime_utr-441Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_287 70620..70740 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1075_2a-0001-cdsEsuBft1075_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_287 70741..70767 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1075_2a-0001-exonagat-three_prime_utr-707Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_287 72198..72409 +
EsuBft1075_2a-0001-exonagat-three_prime_utr-708Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_287 74243..75166 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1075_2a-0001 ID=EsuBft1075_2a-0001|Name=EsuBft1075_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1539bp|location=Sequence derived from alignment at Scaffold_287:70620..75166+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATACCGCCATGAGTGGGCTTGGTACCGTCATGTTCTCGAAGGTTCTAGGG
CGAGCCAATCACGGCATTCCCGTGTCAGAGAACGAGGCCATGCAGAGCGT
GACCTTCGATCAGGTCCACCGATGCAAGCGCACCACCCCATAGCTCAGGT
GCTCGAGCAGTACGTCCTCACGGATATCAAGACGAAAATGGGCATTCCAG
CCTACACTTCGGCAACAAGAGCGACCCCGACCACGACGGTAGCCGTACCT
TCCCCGTGTGCGAGGCTTTTTCCGAAAAGTCGTTTGCTGCGAAGGGCGGC
GGCGGTGAAAAAACTTGGACGCCATCAGCGACATGTTCTAGGAGAGCTTC
ATACGATTCGGCTTGGAATACGTTGGGCCGATCCTCTCCACCGAGAGTAT
TGATCGTCAGGACGACGCTAAGCGCTACCTCAAGCCGTGCTTGTTTGCGG
ACGAGGGGGCAAGAGGTGGAGGAGGTGACCCAGGGGCGGATGGGAGTGAA
GGGTAAACTTAAGATGGAGACGGGGGTGTTCGTCGTCTCCGAGCGAGAGA
AGCGATGGTCCTGATGACCACGCTGGCTACAAAGCCTTGGCGGACACCTA
AACCGTGTTGACAAGGTCGAGTCGCCGGGACCTCCGCTGCAACATGTAAC
ATCGTCCAAAGCGTTTTCTCGGGTCCTCATGACATTCACAACGGGTCCAA
GCTTCGACGGGGGAAGCGGAGAAATATCCCGCTTGCCATGTAGAGTATTT
TATTTTTTCATATGGTGCATGATATCATTGTTGCTCTCGCTGGTGCATGA
GGGCGCCTGGTGCGGGATGAGAGCCAGGTATTTTCTTACTGTGTTGTGCG
TGGCAAGGCGTTTGGAATCTGTCGCTGCTGCCTCTTGGCTTCGTCCGCGC
CGTTTGTTGTCCGTGCGAATTGTGGCTTTTGGGGGAGGGGAGGAAGGGGT
TGTTTCGATGGTGTTGGGAACATAAAGAGGTCTATTTCTGCAGTCTGCAT
TGTTTTTGGAGGACACCGCTGTCGCAGCTGGCTCCGTCTCAGGCAGTGAG
GTTTTTCCTTGACTAGAGTTAGTTGTAGAATTTGGGACGGCCGGGGCGTG
GGGGGGGTTCTGTGTATCGTGTCGGGAGAGACGGTCGTTTCTACCTGTGC
GTTTGGACAACACTGCTGCCGCTACGTGTAGCTGTTGTCTCCGGCTGAGC
GGTGTTTCCTCACAACAAAGGTAGTCTGTTGCGGGGGTTGTGGGTCGTCT
CCATGATCGACGTCACTGACGGTCACGGGCGAGGGCATGCTGGTGTGGGG
GGACATTCAATGTACAGCACGACGTTCTGAAGGGTATGTATGTATTGTTT
CAATTTGAAGTACCTTTTATGGTTCTCGCTTACATGTAATCGTGCAACTT
GGGATGTTGACGACCTTGGGTAGAGATGATAAGCCGCGGGCGGAGATGAG
CTTAAGCTAGAGCTACTGGCATAGTGTATGATGCATGGGTACGGGATGTC
GTTGTTTCAGAGTTTTGCTCGGGAATGTACCGACGGTAA
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protein sequence of EsuBft1075_2a-0001

>EsuBft1075_2 ID=EsuBft1075_2|Name=EsuBft1075_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=93bp
MQAHHPIAQVLEQYVLTDIKTKMGIPAYTSATRATPTTTVAVPSPCARLF
PKSRLLRRAAAVKKLGRHQRHVLGELHTIRLGIRWADPLHREY
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mRNA from alignment at Scaffold_287:70620..75166+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1075_2a-0001 ID=EsuBft1075_2a-0001|Name=EsuBft1075_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4547bp|location=Sequence derived from alignment at Scaffold_287:70620..75166+ (Ectocarpus subulatus male Bft15b)
ATACCGCCATGAGTGGGCTTGGTACCGTCATGTTCTCGAAGGTTCTAGGG
CGAGCCAATCACGGCATTCCCGTGTCAGAGAACGAGGCCATGCAGAGCGT
GACCTTCGATCAGGTCCACCGATGCAAGCGCACCACCCCATAGCTCAGGT
ACGGTCGGGTTAAGTGAACTCTCGGCGGAAAATGCGAGATCTTTTTCAGA
AATGGTGCCCAGTGATTTGAAAAACAAAATATGATGGAAAGTTCATGTCC
CGACCCCCGACACCTCTGTCCACCGAGAACCGACGAACGTCTTCTACCGC
ACCTGCTGTCAGAGTCGTGCACAACATCGTCGATCACTCCGGCATAGCTC
CAGGCACGTTTGGAGTAAAGTCGCCCCTATTTGAATGTGAACGGAAGGAA
CGATGGAATACCTTCTTTCGAGGGCTGCTCATTCGTTCATTTATGAGACT
CAATCAAAGCGTATGCTACAATAGAGGGAAGGAACGGGGGGACGTGCAGG
CAACTATTCCTCGCGATGAGTTGCTTGTGGAAGTAGTAGAGATTTTTGAC
GCACGCGCACCGGTACTGCTGTTGGTTTGAGGGTCTCGCATGTTGTAGCG
TTGCACTGAAAATGTAGTGCGAGGCAGAAGGACGGCGCAAGGTGCATTTA
GGCAACATCTCATGATGCCAAGCGCCGGGGACGAAGAGTCATTGTCCCTG
AAATGACGCCGCTTCCCTGTGGTAATGACGCTTGAGTTTTTTGATCCCCA
TGCACGACTTTACAGCGAGGATAGCTGCTGCTGGTGTCCTGATAGCCCTC
TTGCTTGCTGTTTCCGGTTCAAATTCCAGGCCATCTACTGTCACCCTTGC
TCTGGCGCATCCATCTGTCCAGCCCCTTGCCCGCTAAGCATCATCCCCCC
CTCCCCCCCCCGGTGATTGCCATCGGGGTTGGGTTTTCGTCGCTTGGCAA
CGACGTTATCGTTCGAAGGTGCTCGAGCAGTACGTCCTCACGGATATCAA
GACGAAAATGGGCATTCCAGCCTACACTTCGGCAACAAGAGCGACCCCGA
CCACGACGGTAGCCGTACCTTCCCCGTGTGCGAGGCTTTTTCCGAAAAGT
CGTTTGCTGCGAAGGGCGGCGGCGGTGAAAAAACTTGGACGCCATCAGCG
ACATGTACGTTGCTTTTGTTTCAATATGTGAACCAAGCTCTGTGGGGCTG
AGGGTTTTTGTCGTCTTTAGCGTATTCTTCAAACCCTGTCTCCCCTGGTG
TACTGTCGGCAATTTGTCAGGCCGAAAAGCTCTCATTGGACGTTCAAGCT
CAGGTGAACGTCCAACACTCTCGTTTGTTTTGTTCCTGACGCGTTTCCAG
CGTTATTTATCGTTCCCCATATTTTCAGCGTGCCTTGGCATTGCTCTTAG
GCAGTCGACGCGCTGGTGGTTTGTCGCAAGCTATGTATGTATGACCCCGT
GACGTCAAACAAACTGATATTCATATGGAACGCCCTTTGTTCTTTGTTTC
GTGTCTCAGGTTCTAGGAGAGCTTCATACGATTCGGCTTGGAATACGTTG
GGCCGATCCTCTCCACCGAGAGTATTGATCGTCAGGACGACGCTAAGCGC
TACCTCAAGCCGTGCTTGTTTGCGGACGAGGGGGCAAGAGGTGGAGGAGG
TGACCCAGGGGCGGATGGGAGTGAAGGGTAAACTTAAGATGGAGACGGGG
GTGTTCGTCGTCTCCGAGCGAGAGAAGCGATGGTCCTGATGACCACGCTG
GCTACAAAGCCTTGGCGGACACCTAAACCGTGTTGACAAGGTGTGTCATG
TGTCTTGTCCTTCCTAATAATCGTGCTGCCTCTTTCTCTCTGCCTGCGAT
GATGTTGAATGCTTGCGTGCTTCTTGTCGTGCATCAGTTATGCCCGCGGC
TCCCTATAATGTACACCCTTCCTCATCCCAGCGTATCCGTTGGCGACCCC
TGATGTTTGAATGTACCTCGCCTCCCTTCAGTTTTGTTCTGCGGGGGTGC
GTAGCTTATCGTCGTCCCTGACGTATTCTACGACCTGCGGTAACGCTGTC
GGTTCGTGCCCCTCATCCCCCCCCCCGGTGTTTGCCGTCGGGGTCGGGTT
TTCGTCGCTTGGCAACGACGTTGAAAAACAAGACGCCCCCCCCGGTGTTT
GCCATCGGGGTTGGGTTTTCATTGCTTGGCAACGACGTCGTACAACAAGC
CCCCCCCTCGGTGTGTCCCATGGGGATTGGGTTTTCGTCGCTTGGCAACG
ACGTTGTAAAATAAGCCAAGTCACGTCGTGAACTCGGCAACCAGGCTACC
GTTAATGTTTCACTCTGTTTTGTTTTTGGCGGTAACCATAATGGTGGTCG
AGTAGATCATGTTGTGCGGGGTGGAGAACCCTCACTCCGCGCAAGGGGGA
TGATCGCACCACGTTGTGTTAAAATGGTCAAGCACCCTCGAGGCAGTTAC
ACAGTGCCTACAACTGTCTCAGGAAGTGAAAGCACCAGAAAATATATTAA
GTCATATGCAGCTGTCATTCGTACGCAAGGGAGCAAGCACAAGATGCCGA
ACACCCTTAGCAGTATGCAGCGCACCCTTCATGCGACTCGCCGAATATCT
CACGGCGCTTCGCGCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCG
GCGTGCTCCGTTCCTGCCTTGTAGGGATGCGAGGTCAATGGTCTAACGAC
TACAGCATGCACGACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTGAA
CTCGGCAACCAGGGTACCGTTTTTTTTTTGCCTCTTTGTTTTGGCGGTAA
CCATAGTGGTGGTCGAGTGGATCATGTTGTGAGGGGTGGACAATCCTCAC
TCCGCTCAAGGGGGATGATCGCACCACGATGTGCAAAAATGGTCACGCAT
CCTCGAGGCAGTTACACAGTGCTTATAACTGTCAAAGGAAGAGAAAGCAC
CAGAAAACAAATTAGGTCATACGCAGCTGTCATCCGTACGCAAGGAAGTA
AGCACAAGATGCCGAACACCCTTAGTAGTATGCAGCGCACCCTTCATGCG
ACTCGCCGAAGACCTCACGGCCCTTCGCGCTTGGTGATGTGAGCCTGGTC
CGGTGAAAACCCGGCGTGCTCCGTCCCTGTGTTGTAGGGATGCGAGGTCA
ACGGTCTAACGACGACAGCATGCACGACTATGAGTACCCCCCCCCCCCCG
CCCGCCCGATGCCTGCTTGCTGCAAGTATTATTGTTGACAATGTACATCC
GTCAGCTGTACCAAGAACTACACTGCTGCAAAGGGGGAGAGAATGCCCTC
CATTCCTCGATGGAACACTATTACCCTCCTCTCACACTTCAATGCTATTT
CGCCGCTGATCGGTAACCTCCAGGTCGAGTCGCCGGGACCTCCGCTGCAA
CATGTAACATCGTCCAAAGCGTTTTCTCGGGTCCTCATGACATTCACAAC
GGGTCCAAGCTTCGACGGGGGAAGCGGAGAAATATCCCGCTTGCCATGTA
GAGTATTTTATTTTTTCATATGGTGCATGATATCATTGTTGCTCTCGCTG
GTGCATGAGGGCGCCTGGTGCGGGATGAGAGCCAGGTATTTTCTTACTGT
GTTGTGCGTGGCAAGGCGTTTGGAATCTGTCGCTGCTGCCTCTTGGCTTC
GTCCGCGCCGTTTGTTGTCCGTGCGAATTGTGGCTTTTGGGGGAGGGGAG
GAAGGGGTTGTTTCGATGGTGTTGGGAACATAAAGAGGTCTATTTCTGCA
GTCTGCATTGTTTTTGGAGGACACCGCTGTCGCAGCTGGCTCCGTCTCAG
GCAGTGAGGTTTTTCCTTGACTAGAGTTAGTTGTAGAATTTGGGACGGCC
GGGGCGTGGGGGGGGTTCTGTGTATCGTGTCGGGAGAGACGGTCGTTTCT
ACCTGTGCGTTTGGACAACACTGCTGCCGCTACGTGTAGCTGTTGTCTCC
GGCTGAGCGGTGTTTCCTCACAACAAAGGTAGTCTGTTGCGGGGGTTGTG
GGTCGTCTCCATGATCGACGTCACTGACGGTCACGGGCGAGGGCATGCTG
GTGTGGGGGGACATTCAATGTACAGCACGACGTTCTGAAGGGTATGTATG
TATTGTTTCAATTTGAAGTACCTTTTATGGTTCTCGCTTACATGTAATCG
TGCAACTTGGGATGTTGACGACCTTGGGTAGAGATGATAAGCCGCGGGCG
GAGATGAGCTTAAGCTAGAGCTACTGGCATAGTGTATGATGCATGGGTAC
GGGATGTCGTTGTTTCAGAGTTTTGCTCGGGAATGTACCGACGGTAA
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Coding sequence (CDS) from alignment at Scaffold_287:70620..75166+

>EsuBft1075_2a-0001 ID=EsuBft1075_2a-0001|Name=EsuBft1075_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=282bp|location=Sequence derived from alignment at Scaffold_287:70620..75166+ (Ectocarpus subulatus male Bft15b)
ATGCAAGCGCACCACCCCATAGCTCAGGTGCTCGAGCAGTACGTCCTCAC
GGATATCAAGACGAAAATGGGCATTCCAGCCTACACTTCGGCAACAAGAG
CGACCCCGACCACGACGGTAGCCGTACCTTCCCCGTGTGCGAGGCTTTTT
CCGAAAAGTCGTTTGCTGCGAAGGGCGGCGGCGGTGAAAAAACTTGGACG
CCATCAGCGACATGTTCTAGGAGAGCTTCATACGATTCGGCTTGGAATAC
GTTGGGCCGATCCTCTCCACCGAGAGTATTGA
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