EsuBft1073_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1073_9a-0001
Unique Name	EsuBft1073_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_61	contig	Scaffold_61:153099..156013 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1073_9
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	217
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1073_9a	EsuBft1073_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_61 153099..156013 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1073_9a-0001-exon	EsuBft1073_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_61 153099..153639 +
EsuBft1073_9a-0001-exon	agat-exon-4052	Ectocarpus subulatus male Bft15b	exon	Scaffold_61 154382..156013 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1073_9a-0001-exon	agat-five_prime_utr-433	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_61 153099..153201 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1073_9a-0001-cds	EsuBft1073_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_61 153202..153639 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1073_9a-0001-exon	agat-three_prime_utr-697	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_61 154616..156013 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1073_9a-0001	EsuBft1073_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_61 153202..154615 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_61:153099..156013+
coding sequence from alignment at Scaffold_61:153099..156013+

spliced messenger RNA

>EsuBft1073_9a-0001 ID=EsuBft1073_9a-0001|Name=EsuBft1073_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2173bp|location=Sequence derived from alignment at Scaffold_61:153099..156013+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCGTTTTCAGCCTGAAATCCACACGGCACCACCACCTGTGCCCCTGTCT
CTAACGAGAGACAGCAGCTCGGTACACATTGCCTGCCATACCCCGCGAGA
GTCATGTCTGACATCGACACGCCCACGGCCAAACGTGCTAAGACGAGTGA
AGAAGACAACGATCCCTGGCTCGTTGTGTCCGAGGGTGTCACCGATGTCG
CCGATGCTGCGGAAGGACAAGGAGCAGCTGCTGCTGCGGCATCAACACCT
AGCCTCGATGGCAATGGTTCGCAAGACGACGAGTTCGATGAGGAGCTGGC
CACCCTCCTGGCAGACGAGCCCCCGCGTGCTGTCAAGCAGACGCCTCTGT
CGAAGGCGCTGCTGCAGACAGCCGTGGGAAACTCGGGTGGAGTCCGGGCA
TTGCTGGAGGAGCAAGCGGTGACGGCCGCGAAAGGGTGCGGGTGCGAGAC
ACCCCAGCCGGGATGGGACAAAAGCGACCCCGATAGGATCACGACCTGTG
GGCGCCAGCAGGCCCATATCATCGCTGGGGTGTCTATCCAGCATGTGCTC
GACCGTCAGAAGGAGAGGGACAGCCAAGGCGATAATGTGTCGTACGTGCT
TGCGCGCACGGTGCGGAGAATCCTACAATACTTGGCGGCGCAAGAGATTG
GGGCAAGTGGGCAAGGGAACCAATGCCGGCGCGGGGATTGTTTTGCGCGC
GCTATGGGCATGTTTTTTGGCAAGGGTATGGAGGGCATTCCTCGTGATGT
CGTTCTAGCGTTGCTGAGGTACTAGTAGGCTCGCATCTACGTGTCTGTTC
GAACGCGACGCCTGGTCGAAGTCGACAGAGATGTTTTATTGTCGTTGTTA
TCAGGTTGTCCCGGCGTACATTGCGAAACTTCCGCTGGAAAATTACTGCT
CTCTAGCAAGTGCCAGGGTTGTACTTGGGAGACTACTCGGCGTACATGTG
TGGGCAGAGGGGGAGTAGAGGATCCGCGCTCGACGTTCTTTTTGTCTAGC
TCAGCTTGTTTTGTTTATCATTCCATACAGGGACACTTGGCAACGAGCAA
GAGGGACACAAAAAAATTGGCGAGAAACGCTGCGGAAGTGCCCCTGCGAT
ATGCGACTTCTAGTTGCGGCGTGAAGCCGAAAAAAATATATCCGCTGCCC
GTCACCGTCGCAAATGTGGAAGACAAGCCATGCGTAGGCCCCGCGACATT
CGATGCTTTTCCTCTTAGATGTATCCTAAGGAAACACGGCTGCCCATATC
AGCCACACAAAGACCCGGCTGTCCCTTCCTCGGATGCTGGCTTCGTCGCA
GGCCAAGCTCGACAGCTGCGAGTGTATATGTTTTTTTTTTCAAGCACTCT
TATGTTGTCGTCTCCGCTCCCCCGCAAACAAAAACTTAGCTCGACCTGTC
ACCAGCGTCCGAGGGTTGCGGTGAGTGCTGGCCATTTCTTCCGTAAACCA
TGCAAAAAATGTGCACGTAGACCCATGCGTAAAGAAAAAAAATAATGCAC
ACATAGACTCGTGTGGAACACACGCAAAAGGCGGTCTGTGTTCCTGTTCC
CCCGCTTGTGCGGACGTTTCCTTGCACCCCCCTCCGAACAGTTCCGAGAG
CAAATACAATTAAGTCGAGCGTCTATCGGGATACATTTTTCACGGCACCA
CCCCCCCCCCATGACGACACGTGCAAAGGTGCATAAAGAACAAGGGACAA
ATGAGTTCGCCAAACATCGAACCCTCCGGTGGTTTCCCTCTGCACTTTTC
CCGCGCCTCCCCCGAAATCGCCACCACCCCGCTTGGCAGTTCCAATAAAA
TCATCGTAAGACACCGATGACATAAAAACAAAGCGATTCGATGGCACCCA
GGACATGCAAACACGACACGTTGCGAACACCACACACAAGGACAATGTCA
CTCACCCTCCTACGTCAATTGTTGACAACGCCCACATCCAAGCAAATGCC
AGGCGGGCTTCCCGTCATGGCACACCCGGCAAATGCCGAACGTCGAGAGG
AACAGCAGTTCATGCTCGTAGACTTTCGGGCACATGGAGGCTGCAGCACG
GCGCGAAGATCATCCGCTGGTAGATCAAGGAGTCTTGACAACTCGAACAA
GTTCAAGAAGTACCCCCATGTTGGAGTGGACACCATCGCGTGCATCGCGT
CGCTCCGAACTCACGCCACCCTG

protein sequence of EsuBft1073_9a-0001

>EsuBft1073_9 ID=EsuBft1073_9|Name=EsuBft1073_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=223bp
MSDIDTPTAKRAKTSEEDNDPWLVVSEGVTDVADAAEGQGAAAAAASTPS
LDGNGSQDDEFDEELATLLADEPPRAVKQTPLSKALLQTAVGNSGGVRAL
LEEQAVTAAKGCGCETPQPGWDKSDPDRITTCGRQQAHIIAGVSIQHVLD
RQKERDSQGDNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCFARA
MGMFFGKGMEGIPRDVVLALLRY

mRNA from alignment at Scaffold_61:153099..156013+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1073_9a-0001 ID=EsuBft1073_9a-0001|Name=EsuBft1073_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2915bp|location=Sequence derived from alignment at Scaffold_61:153099..156013+ (Ectocarpus subulatus male Bft15b)
GTCGTTTTCAGCCTGAAATCCACACGGCACCACCACCTGTGCCCCTGTCT
CTAACGAGAGACAGCAGCTCGGTACACATTGCCTGCCATACCCCGCGAGA
GTCATGTCTGACATCGACACGCCCACGGCCAAACGTGCTAAGACGAGTGA
AGAAGACAACGATCCCTGGCTCGTTGTGTCCGAGGGTGTCACCGATGTCG
CCGATGCTGCGGAAGGACAAGGAGCAGCTGCTGCTGCGGCATCAACACCT
AGCCTCGATGGCAATGGTTCGCAAGACGACGAGTTCGATGAGGAGCTGGC
CACCCTCCTGGCAGACGAGCCCCCGCGTGCTGTCAAGCAGACGCCTCTGT
CGAAGGCGCTGCTGCAGACAGCCGTGGGAAACTCGGGTGGAGTCCGGGCA
TTGCTGGAGGAGCAAGCGGTGACGGCCGCGAAAGGGTGCGGGTGCGAGAC
ACCCCAGCCGGGATGGGACAAAAGCGACCCCGATAGGATCACGACCTGTG
GGCGCCAGCAGGCCCATATCATCGCTGGGGTGTCTATCCAGGTGTGTGTA
GTGGCTTGCTTCTTTCATCAAAGTTCTTCTCTCAGACGGTGGGCAGCCTC
CCGCGGAGCCGAAACGTGGATTGCAGCAACTAGTATGTACAGCACTGCTG
TAACCCACAAGCAATGATTCGTTTCTCTCAATACATACTGGCTCTATCCT
ATCCTACAGCAGCAGTCTATATTGAAGCTCAAAGACGAACGAAACGCGGA
AAGTCCTGTTGCACGCAGCAGCTACATGGATGCAGAGTTAGGAGTGACTT
AAATGCTTGGCCCGAACGTACATGCCCAAGACCAAAGCAAGTCTTCAAAA
TCACAGAAAAAATCCCAACAAGACGCACCTTTGGTGACGCAAGATATCAC
ATCCCCTGCACCAATGTGTGGCACACACACACCGCACCAAATTTGAGGGC
TTCACTACCGCACTGGGTCCCGAAGAGGTGTGTAGCCCCAACGACACGTT
AACGGGAAGTGGTCCACAAGAGCGTTACAACTCCGACGTTTTCTGCATCG
CAAACGTTCCTTTGGAAATTAGTATCATGGGGGGTGATATCTTGTGCACC
CGATGATATCGTTGATTCACGTCAAGTGTACACCATGAAACGACGGTTTG
TACCGTAATTAGATTGATTAGGCGGTGCCAATTTATCCTGCCACCTACCC
CAGGGGTAACGGTTACTTGTTTTGGTTGATACTCACCATATTTCCTGCCC
CCCCCCCACCCCTCCCTCCCCGCCCCCTCGCAGCATGTGCTCGACCGTCA
GAAGGAGAGGGACAGCCAAGGCGATAATGTGTCGTACGTGCTTGCGCGCA
CGGTGCGGAGAATCCTACAATACTTGGCGGCGCAAGAGATTGGGGCAAGT
GGGCAAGGGAACCAATGCCGGCGCGGGGATTGTTTTGCGCGCGCTATGGG
CATGTTTTTTGGCAAGGGTATGGAGGGCATTCCTCGTGATGTCGTTCTAG
CGTTGCTGAGGTACTAGTAGGCTCGCATCTACGTGTCTGTTCGAACGCGA
CGCCTGGTCGAAGTCGACAGAGATGTTTTATTGTCGTTGTTATCAGGTTG
TCCCGGCGTACATTGCGAAACTTCCGCTGGAAAATTACTGCTCTCTAGCA
AGTGCCAGGGTTGTACTTGGGAGACTACTCGGCGTACATGTGTGGGCAGA
GGGGGAGTAGAGGATCCGCGCTCGACGTTCTTTTTGTCTAGCTCAGCTTG
TTTTGTTTATCATTCCATACAGGGACACTTGGCAACGAGCAAGAGGGACA
CAAAAAAATTGGCGAGAAACGCTGCGGAAGTGCCCCTGCGATATGCGACT
TCTAGTTGCGGCGTGAAGCCGAAAAAAATATATCCGCTGCCCGTCACCGT
CGCAAATGTGGAAGACAAGCCATGCGTAGGCCCCGCGACATTCGATGCTT
TTCCTCTTAGATGTATCCTAAGGAAACACGGCTGCCCATATCAGCCACAC
AAAGACCCGGCTGTCCCTTCCTCGGATGCTGGCTTCGTCGCAGGCCAAGC
TCGACAGCTGCGAGTGTATATGTTTTTTTTTTCAAGCACTCTTATGTTGT
CGTCTCCGCTCCCCCGCAAACAAAAACTTAGCTCGACCTGTCACCAGCGT
CCGAGGGTTGCGGTGAGTGCTGGCCATTTCTTCCGTAAACCATGCAAAAA
ATGTGCACGTAGACCCATGCGTAAAGAAAAAAAATAATGCACACATAGAC
TCGTGTGGAACACACGCAAAAGGCGGTCTGTGTTCCTGTTCCCCCGCTTG
TGCGGACGTTTCCTTGCACCCCCCTCCGAACAGTTCCGAGAGCAAATACA
ATTAAGTCGAGCGTCTATCGGGATACATTTTTCACGGCACCACCCCCCCC
CCATGACGACACGTGCAAAGGTGCATAAAGAACAAGGGACAAATGAGTTC
GCCAAACATCGAACCCTCCGGTGGTTTCCCTCTGCACTTTTCCCGCGCCT
CCCCCGAAATCGCCACCACCCCGCTTGGCAGTTCCAATAAAATCATCGTA
AGACACCGATGACATAAAAACAAAGCGATTCGATGGCACCCAGGACATGC
AAACACGACACGTTGCGAACACCACACACAAGGACAATGTCACTCACCCT
CCTACGTCAATTGTTGACAACGCCCACATCCAAGCAAATGCCAGGCGGGC
TTCCCGTCATGGCACACCCGGCAAATGCCGAACGTCGAGAGGAACAGCAG
TTCATGCTCGTAGACTTTCGGGCACATGGAGGCTGCAGCACGGCGCGAAG
ATCATCCGCTGGTAGATCAAGGAGTCTTGACAACTCGAACAAGTTCAAGA
AGTACCCCCATGTTGGAGTGGACACCATCGCGTGCATCGCGTCGCTCCGA
ACTCACGCCACCCTG

Coding sequence (CDS) from alignment at Scaffold_61:153099..156013+

>EsuBft1073_9a-0001 ID=EsuBft1073_9a-0001|Name=EsuBft1073_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=672bp|location=Sequence derived from alignment at Scaffold_61:153099..156013+ (Ectocarpus subulatus male Bft15b)
ATGTCTGACATCGACACGCCCACGGCCAAACGTGCTAAGACGAGTGAAGA
AGACAACGATCCCTGGCTCGTTGTGTCCGAGGGTGTCACCGATGTCGCCG
ATGCTGCGGAAGGACAAGGAGCAGCTGCTGCTGCGGCATCAACACCTAGC
CTCGATGGCAATGGTTCGCAAGACGACGAGTTCGATGAGGAGCTGGCCAC
CCTCCTGGCAGACGAGCCCCCGCGTGCTGTCAAGCAGACGCCTCTGTCGA
AGGCGCTGCTGCAGACAGCCGTGGGAAACTCGGGTGGAGTCCGGGCATTG
CTGGAGGAGCAAGCGGTGACGGCCGCGAAAGGGTGCGGGTGCGAGACACC
CCAGCCGGGATGGGACAAAAGCGACCCCGATAGGATCACGACCTGTGGGC
GCCAGCAGGCCCATATCATCGCTGGGGTGTCTATCCAGCATGTGCTCGAC
CGTCAGAAGGAGAGGGACAGCCAAGGCGATAATGTGTCGTACGTGCTTGC
GCGCACGGTGCGGAGAATCCTACAATACTTGGCGGCGCAAGAGATTGGGG
CAAGTGGGCAAGGGAACCAATGCCGGCGCGGGGATTGTTTTGCGCGCGCT
ATGGGCATGTTTTTTGGCAAGGGTATGGAGGGCATTCCTCGTGATGTCGT
TCTAGCGTTGCTGAGGTACTAG