EsuBft1073_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1073_3a-0001
Unique NameEsuBft1073_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_61contigScaffold_61:117729..118829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1073_3
Protein domainsIPR003034
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length45
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1073_3aEsuBft1073_3aEctocarpus subulatus male Bft15bgeneScaffold_61 117729..118829 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1073_3a-0001EsuBft1073_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_61 117765..118727 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1073_3a-0001-exonEsuBft1073_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_61 117729..117834 -
EsuBft1073_3a-0001-exonagat-exon-4030Ectocarpus subulatus male Bft15bexonScaffold_61 118062..118188 -
EsuBft1073_3a-0001-exonagat-exon-4029Ectocarpus subulatus male Bft15bexonScaffold_61 118610..118829 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1073_3a-0001-exonagat-three_prime_utr-691Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_61 117729..117764 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1073_3a-0001-cdsEsuBft1073_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_61 117765..117834 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1073_3a-0001-exonagat-five_prime_utr-428Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_61 118728..118829 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1073_3a-0001 ID=EsuBft1073_3a-0001|Name=EsuBft1073_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=453bp|location=Sequence derived from alignment at Scaffold_61:117729..118829- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGGTGCACATGGAGCAAGCGAGCGAAGAGTAGCAACTGCAAACAAAGTTA
AGCACCGCTAGATACCACCCTTCCCTCGTACATTTGTGGGTGGTGAGACG
CAATGGGGGCTGTGGACAAGACGTGGACAAAGAAGGAGCTTCAGGCGGAG
TGCAAACGTCGCGGAATTGCAGGGTACTCGCGCTTGAACAAGGCCTCGCT
CCTTCGAGCTCTTCAGACAGGGAACATACAAAGCAAGGGGCCCGCTGATC
TTAATGTGGCAGAACTACGGAAAGAATGTCGACGGCGGGGGCTGCAGGAC
GTCTCCAAGCTTAAAAAAGATGAATTGATCCGGTTGTTGAAAGGCGAAAA
ACAAAAAAACTTCTTCCGGCAGCGGCACTACGCCGGGGGAGGCGAAGCCT
CGAGAGGCTACGCTTGAGGAGTTGCGCGCGGAGTGCCGGAAACGCGGAAT
GAC
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protein sequence of EsuBft1073_3a-0001

>EsuBft1073_3 ID=EsuBft1073_3|Name=EsuBft1073_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=104bp
MGAVDKTWTKKELQAECKRRGIAGYSRLNKASLLRALQTGNIQSKGPADL
NVAELRKECRRRGLQDVSKLKKDELIRLLKGEKQKNFFRQRHYAGGGEAS
RGYA
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mRNA from alignment at Scaffold_61:117729..118829-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1073_3a-0001 ID=EsuBft1073_3a-0001|Name=EsuBft1073_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1101bp|location=Sequence derived from alignment at Scaffold_61:117729..118829- (Ectocarpus subulatus male Bft15b)
TGGTGCACATGGAGCAAGCGAGCGAAGAGTAGCAACTGCAAACAAAGTTA
AGCACCGCTAGATACCACCCTTCCCTCGTACATTTGTGGGTGGTGAGACG
CAATGGGGGCTGTGGACAAGACGTGGACAAAGAAGGAGCTTCAGGCGGAG
TGCAAACGTCGCGGAATTGCAGGGTACTCGCGCTTGAACAAGGCCTCGCT
CCTTCGAGCTCTTCAGACAGGTGGGTGCCAGCAATGTAGCCACAGCTTTA
CCTGGCGTTGCTTTGATGCGTTGCTTCTGATAATCCTCCTGCGATGCTAT
TGGCCGTCGACTTCCTAGATTGCAGAATATATACGTAAAACTGCTGTAGT
AGTAGATGCTCGAGAAGCTGCAGCAGATTTACGGGGCATTGGGGGTCCTG
TGTCCTGCCTGTTTTGCGAATTCGTACTACTGGATATTGTATATTGCAGA
TATATCATCTCCATGTTTTACCCTCGCCCATGTTGCGCGCTATTGCTGTG
TTCGTCCATGCAAAAAATAGAAAGATGCAAGCGATAGCGCTGGTGCTCTT
GTGACTGCTTGCGTTTCGCTCACCCGCGTCTACTGCTGTTCATACTGCTG
GCTAACGCCAAGCCGTGTTGTCGCGTACGTTGTCAAGGCAGGGAACATAC
AAAGCAAGGGGCCCGCTGATCTTAATGTGGCAGAACTACGGAAAGAATGT
CGACGGCGGGGGCTGCAGGACGTCTCCAAGCTTAAAAAAGATGAATTGAT
CCGGTTGTTGAAAGGCGAGTGCCCGAAAAGGGATTCTTTCAGAAGGTTGA
AGTAGTACAACCGTGTACGGAAGACATCTGTATTTCGCATGCCTACAGAA
AAAGGATGATGCCCAGGTTAGAGCAACCACCTTGGCGTGGGTTGTGTTTC
AAGGGGCTGATGACCAAAGCTACGCGTCTTCCTCGCTGAATCCGTCGGCT
TGCCCCCGTCCCCCCCTCATGGCGCACTTCTGCCACATTCTGCAGAAAAC
AAAAAAACTTCTTCCGGCAGCGGCACTACGCCGGGGGAGGCGAAGCCTCG
AGAGGCTACGCTTGAGGAGTTGCGCGCGGAGTGCCGGAAACGCGGAATGA
C
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Coding sequence (CDS) from alignment at Scaffold_61:117729..118829-

>EsuBft1073_3a-0001 ID=EsuBft1073_3a-0001|Name=EsuBft1073_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=315bp|location=Sequence derived from alignment at Scaffold_61:117729..118829- (Ectocarpus subulatus male Bft15b)
ATGGGGGCTGTGGACAAGACGTGGACAAAGAAGGAGCTTCAGGCGGAGTG
CAAACGTCGCGGAATTGCAGGGTACTCGCGCTTGAACAAGGCCTCGCTCC
TTCGAGCTCTTCAGACAGGGAACATACAAAGCAAGGGGCCCGCTGATCTT
AATGTGGCAGAACTACGGAAAGAATGTCGACGGCGGGGGCTGCAGGACGT
CTCCAAGCTTAAAAAAGATGAATTGATCCGGTTGTTGAAAGGCGAAAAAC
AAAAAAACTTCTTCCGGCAGCGGCACTACGCCGGGGGAGGCGAAGCCTCG
AGAGGCTACGCTTGA
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