EsuBft1073_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1073_2a-0001
Unique NameEsuBft1073_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_61contigScaffold_61:116651..117727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1073_2
Protein domainsIPR018306
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length80
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSAP domain
Ec32 orthologEc-06_003600.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1073_2aEsuBft1073_2aEctocarpus subulatus male Bft15bgeneScaffold_61 116651..117727 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1073_2a-0001-exonEsuBft1073_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_61 116651..117412 -
EsuBft1073_2a-0001-exonagat-exon-4028Ectocarpus subulatus male Bft15bexonScaffold_61 117682..117727 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1073_2a-0001-exonagat-three_prime_utr-690Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_61 116651..116750 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1073_2a-0001-cdsEsuBft1073_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_61 116751..117412 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1073_2a-0001-exonagat-five_prime_utr-427Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_61 117689..117727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1073_2a-0001EsuBft1073_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_61 116751..117688 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1073_2a-0001 ID=EsuBft1073_2a-0001|Name=EsuBft1073_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=808bp|location=Sequence derived from alignment at Scaffold_61:116651..117727- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGCTTTAGTCATCTCAAGAAACAGGAGCTAATTCGAAGGATGGCAGACTA
CGAGTCATCGGACAACGGCAGCAAGGGAGTCAAGGCATCGGCGGCTGTAG
CCCAAGGAGGAAAAGCGACGCGAATAAGGTTCCTGGGGAGGGGAGGGAAA
GAGAAACAGCAGCAGCGCGTTCGAATGAAAGGTCCGCTGCGCTCGAGAGC
CCAGGAACGTTTCGACGCCGGTCCTTCTCCCCAAGATACGCCGGGCTTCC
TCTACATTTACTGCGAGTCCGGCGGCGGCGGCGGTGGCGGAGGCGATAAG
ACAAGAGAGTGGAAAATCGGCAAGACCACTCTAGACCCGCCAGAGAGACG
CATGAAGCAGTCCGCTCACAACAACAGGAAGACTTACACGCTCCGGGCGT
CCTGGCACGTTCCGTGGTGCGGGTACGTCGAGAAGATCGTGCACCTCGAT
CTCGACGACCTGAAGGTGGTCCCGGGCAAGGAGAAGAGCTGGGACGGTGG
CGGCAGAGAGGACGGGGGGACGGAGTGGTTTCGGGCCGATATTGAAGTCG
TCGAGGCCAGGGTGAAGCTCGCGATCCGGATGGTTGCCGCCCGCGAGGCA
GACGAGGCGGACTTGTTGGGAGTGCAACCGGCGTTCTGTGGCATGTTCCG
GTGCGGCCTTCCCATCCGGAGGCGGCGGCGACACGAGCCCAAACTTGGCA
CGAGCTGATTTCGAGTTGCACATATGCTTGTTTTCGTTTGAGGGGCTGAT
CTGAAGTTAAGAAAAAAAGAAAAAAGAAAAAAATGGAACGTATCGACAGC
GACGCGTC
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protein sequence of EsuBft1073_2a-0001

>EsuBft1073_2 ID=EsuBft1073_2|Name=EsuBft1073_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=222bp
MADYESSDNGSKGVKASAAVAQGGKATRIRFLGRGGKEKQQQRVRMKGPL
RSRAQERFDAGPSPQDTPGFLYIYCESGGGGGGGGDKTREWKIGKTTLDP
PERRMKQSAHNNRKTYTLRASWHVPWCGYVEKIVHLDLDDLKVVPGKEKS
WDGGGREDGGTEWFRADIEVVEARVKLAIRMVAAREADEADLLGVQPAFC
GMFRCGLPIRRRRRHEPKLGTS
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mRNA from alignment at Scaffold_61:116651..117727-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1073_2a-0001 ID=EsuBft1073_2a-0001|Name=EsuBft1073_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1077bp|location=Sequence derived from alignment at Scaffold_61:116651..117727- (Ectocarpus subulatus male Bft15b)
GGCTTTAGTCATCTCAAGAAACAGGAGCTAATTCGAAGGATGGCAGGTGA
GACAAAGGGCTAGATAGTGCAGATGCAGAAGGCCTGCCGCTTACACTCCG
GGCACGTTGGGATTGACTTTGCGGCCAAACCTTCCGACCGAGCAGACTGC
CAAGTCATTGCCCGCCCGTAGCATCAACCGAAGTGTTTCCCTTGTTCGCG
GCACATCGTCTCTGTCTCATGTCCTCGCGACACCTACTTGTCGTTACCTG
GAAACAACAACATTGAAATCTCTGGATCTTGACGGCTAATGACTTCGGAA
ATACAACGACGGCAGACTACGAGTCATCGGACAACGGCAGCAAGGGAGTC
AAGGCATCGGCGGCTGTAGCCCAAGGAGGAAAAGCGACGCGAATAAGGTT
CCTGGGGAGGGGAGGGAAAGAGAAACAGCAGCAGCGCGTTCGAATGAAAG
GTCCGCTGCGCTCGAGAGCCCAGGAACGTTTCGACGCCGGTCCTTCTCCC
CAAGATACGCCGGGCTTCCTCTACATTTACTGCGAGTCCGGCGGCGGCGG
CGGTGGCGGAGGCGATAAGACAAGAGAGTGGAAAATCGGCAAGACCACTC
TAGACCCGCCAGAGAGACGCATGAAGCAGTCCGCTCACAACAACAGGAAG
ACTTACACGCTCCGGGCGTCCTGGCACGTTCCGTGGTGCGGGTACGTCGA
GAAGATCGTGCACCTCGATCTCGACGACCTGAAGGTGGTCCCGGGCAAGG
AGAAGAGCTGGGACGGTGGCGGCAGAGAGGACGGGGGGACGGAGTGGTTT
CGGGCCGATATTGAAGTCGTCGAGGCCAGGGTGAAGCTCGCGATCCGGAT
GGTTGCCGCCCGCGAGGCAGACGAGGCGGACTTGTTGGGAGTGCAACCGG
CGTTCTGTGGCATGTTCCGGTGCGGCCTTCCCATCCGGAGGCGGCGGCGA
CACGAGCCCAAACTTGGCACGAGCTGATTTCGAGTTGCACATATGCTTGT
TTTCGTTTGAGGGGCTGATCTGAAGTTAAGAAAAAAAGAAAAAAGAAAAA
AATGGAACGTATCGACAGCGACGCGTC
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Coding sequence (CDS) from alignment at Scaffold_61:116651..117727-

>EsuBft1073_2a-0001 ID=EsuBft1073_2a-0001|Name=EsuBft1073_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=669bp|location=Sequence derived from alignment at Scaffold_61:116651..117727- (Ectocarpus subulatus male Bft15b)
ATGGCAGACTACGAGTCATCGGACAACGGCAGCAAGGGAGTCAAGGCATC
GGCGGCTGTAGCCCAAGGAGGAAAAGCGACGCGAATAAGGTTCCTGGGGA
GGGGAGGGAAAGAGAAACAGCAGCAGCGCGTTCGAATGAAAGGTCCGCTG
CGCTCGAGAGCCCAGGAACGTTTCGACGCCGGTCCTTCTCCCCAAGATAC
GCCGGGCTTCCTCTACATTTACTGCGAGTCCGGCGGCGGCGGCGGTGGCG
GAGGCGATAAGACAAGAGAGTGGAAAATCGGCAAGACCACTCTAGACCCG
CCAGAGAGACGCATGAAGCAGTCCGCTCACAACAACAGGAAGACTTACAC
GCTCCGGGCGTCCTGGCACGTTCCGTGGTGCGGGTACGTCGAGAAGATCG
TGCACCTCGATCTCGACGACCTGAAGGTGGTCCCGGGCAAGGAGAAGAGC
TGGGACGGTGGCGGCAGAGAGGACGGGGGGACGGAGTGGTTTCGGGCCGA
TATTGAAGTCGTCGAGGCCAGGGTGAAGCTCGCGATCCGGATGGTTGCCG
CCCGCGAGGCAGACGAGGCGGACTTGTTGGGAGTGCAACCGGCGTTCTGT
GGCATGTTCCGGTGCGGCCTTCCCATCCGGAGGCGGCGGCGACACGAGCC
CAAACTTGGCACGAGCTGA
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