EsuBft1072_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1072_6a-0001
Unique NameEsuBft1072_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_98contigScaffold_98:344133..349475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1072_6
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsTMhelix
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon8
Length120
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_004720.2
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1072_6aEsuBft1072_6aEctocarpus subulatus male Bft15bgeneScaffold_98 344133..349475 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1072_6a-0001EsuBft1072_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_98 344133..349475 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1072_6a-0001-exonagat-exon-57116Ectocarpus subulatus male Bft15bexonScaffold_98 344133..344143 +
EsuBft1072_6a-0001-exonagat-exon-57119Ectocarpus subulatus male Bft15bexonScaffold_98 344249..344424 +
EsuBft1072_6a-0001-exonagat-exon-57115Ectocarpus subulatus male Bft15bexonScaffold_98 344955..345093 +
EsuBft1072_6a-0001-exonagat-exon-57117Ectocarpus subulatus male Bft15bexonScaffold_98 346462..346647 +
EsuBft1072_6a-0001-exonagat-exon-57118Ectocarpus subulatus male Bft15bexonScaffold_98 346924..346999 +
EsuBft1072_6a-0001-exonEsuBft1072_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_98 347717..347908 +
EsuBft1072_6a-0001-exonagat-exon-57113Ectocarpus subulatus male Bft15bexonScaffold_98 348278..348373 +
EsuBft1072_6a-0001-exonagat-exon-57114Ectocarpus subulatus male Bft15bexonScaffold_98 349146..349475 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1072_6a-0001-cdsEsuBft1072_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_98 344133..344143 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1072_6a-0001 ID=EsuBft1072_6a-0001|Name=EsuBft1072_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1206bp|location=Sequence derived from alignment at Scaffold_98:344133..349475+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACTACGGGCAATTTGGACGCTTCTTCTGCAAAAGGTGTCGGCCTG
GTGGCTATGGGGAGAAACGAGCATCCCGGACGAGGTTCCCCCTCTCAATT
TCAGTGTGCTTGTTGGGGAGGAGGCTGGCCGAGAGTGGCTGCAAGGGGCG
GAGGCTAGGTCGGGCGATAGCACTGCTGCGCTTGAAGGGGTTCAACAAGT
CGAAGGTCGACGATCGACCAACATTCCGCCACGGTGGGATTCCAGCACCT
GCATGGAGAGTTGGGGGGTGCCGGAGCTTCAGACGGAGGTCGATCCTGGG
GGTTATCTGTTGTTCTCGGAGGGAAGGTACCATCGAATCCTAGATCTCTG
GGCGTTTCGAGCATTGCTGCGAGATCGCCTCCTGTCGGCGGAAGGTTTTC
TGACGGTCCTTTCGGCGGAGTGGGAGCAGACGCTGCTGCCCAGCCTCGTC
ACAGCGGGCAACATCACATCCTTTTTTGAGGAGTACGACCAGTGGCAGGC
GAGAGCGTGGCGGCGGGAACCCGTGGATCTTCTGAGGCCAAACCCCTTCT
ACCTGGGTTTAGTAGGAAAACTCATTGAGGCGCAGGAGGGTTGGAAGGAC
GGCGGGTTCTTGTCTGTGCAGTGGAGGACGGAGACGTCCACCGGAAACTT
GACGGAGTGCTACGGGGTCCACGTGCGGTCGGCGGTAGAAGAGCGGCGTC
TTTCATTGGGATTTAGTCGAAGCCAGGTGTTCTTCAATACCGATCTGGTG
GGGGAGACCTCGACAACCTACAATGCCACGGTGGTGTCCGCTTACAGCGG
CGTCGTGGATGCAATCCGCGGGGACTACCCTGTGGCGATGGATAACACCG
TCTACGACATCCTAAATGATGAACAGGACGCAGGCGTGAAGGCAATAGTA
TCCGGCTTGATCTCCGCCTCGGCGGACTTCCTGCTTACCTCGTCATTCAA
CGGCACCGGCAGCAACGAGTGTCAGAAGCCTCACTCCAAGTACATCGACC
TCGTCACGGACTGGCGGTTGGACGTGGTCGGGAAAGACCTCTCATCTATC
GGGCAGATGCTACCGCTATTGTCGCTTGAAGAGGGAGGCGAGGACGGCAC
GCCTCTGGCTCTGCTTGTGCTGTTGGCGGGACTTGTGGCTCTGGCGGCTG
TGTTGGTTTGGAACCAGCGTGTGATTGGACGGCCCCGATCGAAGAAGGTC
CCGTAG
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protein sequence of EsuBft1072_6a-0001

>EsuBft1072_6 ID=EsuBft1072_6|Name=EsuBft1072_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=401bp
MGLRAIWTLLLQKVSAWWLWGETSIPDEVPPLNFSVLVGEEAGREWLQGA
EARSGDSTAALEGVQQVEGRRSTNIPPRWDSSTCMESWGVPELQTEVDPG
GYLLFSEGRYHRILDLWAFRALLRDRLLSAEGFLTVLSAEWEQTLLPSLV
TAGNITSFFEEYDQWQARAWRREPVDLLRPNPFYLGLVGKLIEAQEGWKD
GGFLSVQWRTETSTGNLTECYGVHVRSAVEERRLSLGFSRSQVFFNTDLV
GETSTTYNATVVSAYSGVVDAIRGDYPVAMDNTVYDILNDEQDAGVKAIV
SGLISASADFLLTSSFNGTGSNECQKPHSKYIDLVTDWRLDVVGKDLSSI
GQMLPLLSLEEGGEDGTPLALLVLLAGLVALAAVLVWNQRVIGRPRSKKV
P
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mRNA from alignment at Scaffold_98:344133..349475+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1072_6a-0001 ID=EsuBft1072_6a-0001|Name=EsuBft1072_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5343bp|location=Sequence derived from alignment at Scaffold_98:344133..349475+ (Ectocarpus subulatus male Bft15b)
ATGGGACTACGGTAAAACTGCGGCCCGAGTGATTCTGTTTTTGTCTGCAA
GAGACAAGTCTTTGCACAGAGCAGTCACCGGCGCACGCACGCACACCTGG
TCCTTCGCGCGCACAGGGCAATTTGGACGCTTCTTCTGCAAAAGGTGTCG
GCCTGGTGGCTATGGGGAGAAACGAGCATCCCGGACGAGGTTCCCCCTCT
CAATTTCAGTGTGCTTGTTGGGGAGGAGGCTGGCCGAGAGTGGCTGCAAG
GGGCGGAGGCTAGGTCGGGCGATAGCACTGCTGCGCTTGAAGGTATGTCT
ACTCTACAACCTCCTCCTGCTTTCACGGAGTTTTTAGTTGGGAGCGGGGT
GGACATATTTGGGCCCCCTCAGTATCGCCGATCACCGCATGTCGGTGTTT
CAGCACGTGTGTAGCGCATGCCAAACTCGCTCAGTAGCAGTCGGGCATGA
CCCAGGCGACAAATCCCGATCAATGTGGTATGCACAGCAAAACCCGCAGC
ATACCGAAGCCCTCGAATCGGCGCACGGCGCGGCCACGAATGCCTAGTTC
TACTATTACAATAACGCCGTTTCCTGAATATTTGGACTGCTTCCAGCTTG
TGCGTTGCCAGGGCGTTACTATGTTATTACAGACACCGCATTCCCAATAC
AGTGATGTATATTGGGGGCGATACGATTCTCTCCCCATTCTCTGCATCTG
GCGCGTTACGCGAGGGGGGTCGGAGGGGGGGGAGAGGCAACCACACCTCC
AACAGGGTGGCCTTATTGTTCCTCAGACTTGTCACCCCAAATACAATCAC
GAAAACGACGAAACCTAAGCAGGGGTTCAACAAGTCGAAGGTCGACGATC
GACCAACATTCCGCCACGGTGGGATTCCAGCACCTGCATGGAGAGTTGGG
GGGTGCCGGAGCTTCAGACGGAGGTCGATCCTGGGGGTTATCTGTTGTTC
TCGGAGGGAAGGTGCGACTGTGCCTTATGGTTTATTCTTGTTGAATTTCC
TGTAGACAGCTGCCTCTTATGTCGGTTGAAAATGAAGCTTGGTACCTGAT
GCATCACAACAGATGTGGGAGATTTGTTTGTCGACCGAGTTTACGTGTTG
TTCCTGACGATGCACTACTGTCGATTGGTGAAGCGTAAAGTAGACCGCCT
GCTATTATACTTCCCTTTGGCGTTTCGTGAGGTCTACGCGGCCGCAAGCA
TCACAACTCAATCGATGATATACTGATTTGTGGATTCACCCCGACCTCCG
CCGCTCATAGAGCAGTGGCATGACCTGTCGGGCCAACGACCGTGCCAGTT
TTGCGAGACTTTGGTCGCGTGCCCCCCCAACCCTCTTCGTTCCGAAGCAT
TCCCGTTGTTAGGCTGGGTGGAGGGTGGTGCCTTGGTCGTGCTGAGTGGT
AAGCGTCCAGTACCTGCTGTCGTCGGCCCGTCCCACCTCTCGTCGCCAAC
CCAACTCATTCCATCCCATCCTATGCCACTTGAAGATACTGACGAAGACC
GCCCTAGCATTAGTCGCCCACCCATCCCATGCCGCGTTTTTTTATATTCA
CGTGGGGATCCTTGTGTTGGCGGTATTAACCCGTCGGTGAAACCACCACG
TCGTGAATCGCCATTCGTCCCAAGACACCGCCGCGTGTTTCGATTTTTCT
TCCCCCAACAGTTTCTTCGATGCTGCCACGGAAGCAGTCCCGTTTCGTCT
CAACATCGTGACCTATGATACCATGCCGACACATGCTTTCGTTTCAGGGA
ACAACTAGGCAACAACAGGTTTCTCTTGTCCGATGGTCTGGTCATTGCCA
GAGCTCTCAACCGCACCCTCGTCGAGTTTCCCATGCAGCATTCACGGATC
TCCACGCCTGACGCCGGCCTCGGTTCGTGTGACTACTTCGACTGCGAAAT
ATTGTGCTCGTGAGTTACTTTGTCTATGTGGTGTCCTGTTTCTGAAAAAA
TAAAACGGCTTTTGGTTGCCGCGTGTCAGCTGTGCAAGTCGGACACCGCC
TTGGGCCAGGACTTAATGGTCACAGATTTTGTAGATCGCCCTGGTCTCGA
GTGTAGAGATTTTCCTTTGGGCACATTGTGATTATTTTCCCGTGGCATAC
CCCTCCTTTGAGTGGCTCAGGGTAGATGTTTTTTGGTCTAAGTTTAGACA
TCGGCGAACAGTAGTACCGGTGATCGATCTTGAGGGAACCACACAGCCAC
ATTGACACTCAGATCAGCCTGTCAAGACTTACGACAAACAACCGACTAGC
AAGCTCGCCGTGATCAACGGTACCCCCTTCCTCCCCGTGCCTGTTCTCTG
GCGAGGGAACGCAACTGGTACTTGAACAGGTACCATCGAATCCTAGATCT
CTGGGCGTTTCGAGCATTGCTGCGAGATCGCCTCCTGTCGGCGGAAGGTT
TTCTGACGGTCCTTTCGGCGGAGTGGGAGCAGACGCTGCTGCCCAGCCTC
GTCACAGCGGGCAACATCACATCCTTTTTTGAGGAGTACGACCAGTGGCA
GGCGAGAGCGTGGCGGTCATCAACCTGCTACAGATTCTAGTGCAATTCTT
CCGAAAACCTTGATGTTGAAGGCCCTGCTTGTCAAACACGGCTGCTGCGA
ATCCGAGGCAGACGTTGCCTGCCGGAACTACGGTTCGCGTATGCTGCATC
AGCTGCAGCAGTCTTTATCGGGAAGGACTAGCAGATGGTCGTGACGAAAC
TTGCATCGAGATGAAGTGGGTGGATTGGCATGCTGTCGTGATGAAAACGA
CAGGTTATCGTGATGAAGATGGCGTGGAAAAGTGCTCTCAGGCGGGAACC
CGTGGATCTTCTGAGGCCAAACCCCTTCTACCTGGGTTTAGTAGGAAAAC
TCATTGAGGCGCAGGAGGTCAGTCAACCCCATTGTATGTATCTACTTAAA
GCCGTTGAAATGACGGAGAATATCTCCACCTTTTCTCTGCCGCAATATTC
AGGTGATTTTGAATACTTCAGGCTGAACACGACAACCTCTAGGAGCACCA
GAATATCGATGGAGTCTTAGATGTGGCTTGGACGGTCCTAAATACCTTCA
TCGCCGAGTAGGATGTTTGGTTGGGTATACAGACGTCGGACGAAAAGACA
AGACGCGAGCATCGCACATTCAGGGAGGATTCTTCGGTACTTCGTGTGTC
AACCACAAATATTGAGGAGGTGGGCATGGGATTCCCGCGAAGATCGGCTG
CTCCCGAGTGTGTCCATGGGATGAGGGGCATGTCGTTCGTGCATAGACAG
GATGCACGTGTCGTCATCCTCGCTCCTGCTTTCTTTGCCAACCAAGGGTG
TTCACAGTACATTCACAGACTCAAGGCAAGGACAAGGGCAACAAGTCGTT
CCCCTTAACCTGAATCACCAAAGTACGCGTGACACCACGCTACACGGCAA
AGGTCCTGGTACCGGAAAACACATCCCGCCACGCTCCGACTGCGCCTCTG
TACAACGGTGTGAAGCTGCTTCGTTCGACGCGCCCACCATCGCCTCGCCT
GCAACCGTTCCCTACACGCGTTTGACATGTGCACGCAACGCGACGATGAC
GACGACGACGACGACAACGCGCTCTCGAAACAAGGGTTGGAAGGACGGCG
GGTTCTTGTCTGTGCAGTGGAGGACGGAGACGTCCACCGGAAACTTGACG
GAGTGCTACGGGGTCCACGTGCGGTCGGCGGTAGAAGAGCGGCGTCTTTC
ATTGGGATTTAGTCGAAGCCAGGTGTTCTTCAATACCGATCTGGTGGGGG
AGACCTCGACAACCTACAATGCCACGGTGCGACACACATTTGGATACTGT
ACACTCAAATACACCTTGACGGCGTGTGGGGGACCTTGTGAAATACAGAG
CTTTTTGGAACCTTTTGCCTTTATTATCGCGTTTTTGGGATTCCCCCAGT
TCTGGCGCGGCTGAGGCTACGAGAAATCATGTCTCATGTCGTACTCACAC
AACAACGATTATCGCCCTTTGGAGATAATTGTGTGCTCCCTGTGCACGGC
GTGTGCCCCCAAAGCTGGTTGCGGTACCGTCTTTATCCACGACGATGCCG
TCGGACCGCCTGTTACTCCTGCTCCCAATCCGTGCCTGGCCTATCTGGTC
CCGTCGACTCGCGTGCGCCGGTTGTCTCTGCTGGCATATGAGCAGGTGGT
GTCCGCTTACAGCGGCGTCGTGGATGCAATCCGCGGGGACTACCCTGTGG
CGATGGATAACACCGTCTACGACATCCTAAATGATGAACAGGTGCGGCTT
TGGGGATCGAAGCAGCATTGATCGCGTCGACGATATCGTCGTCCACCAGC
GATGAGCTGAAAACCAAGCAAGTATGGCATACGTGCCTGAATAGTTTTGG
GGCGTTTGTGTCTCGTGGAGGTGTTGCAGGTGTTCACTGCAGGATTCTTG
ACTGGTTCAGCCAGAGTCCATTTGTATTTTTTGCGTATTCCCGATGCAAG
GCTTCACGCCGTGATGGTGCTATCGAAACACGAAGCAGCTCTCGACTTGT
GATACGTGCACGCTTCAAAGCAAGCAAGTCCCTTATCGCCGCCCGTACGA
CTGTCTATTCGCCCCCGGTGTGTCTGATAGAAGGAATAATCGAACATCAT
GCTCTCTCGCTCATGAGCGACGACGTCTGATTTTCGGAACAGCCCTGCTT
TCGACTGCAGTCGGGGGTCCCTCTAGACTAAAGGGCTGGTTAACCCGATA
CGGGCGGATGGCACATACTGACTCTGATACAACAATCGAGTTGCATTATT
CTCCACAGCGTGGATACTGCGAGCGTGCCAGCTACTACCACACTACAGGG
CGGGTGAGTTGACCTGACACTTACCCACCCCACAGAGGGACCCTCTTCTA
CTCTAGCGTGATCAGAAGGGCATCCAGCAAGAACACACCTCTGGTTGACC
TAGATGCTGCTGTAGTAGAGAGATGGTGTTGAACGATGATATCTCGTTGA
AACTTTTGCGCGTGTTTGGGCTAACCCTCCCGGCTCATCCCCCCCCATCC
CCTAAAAAAAAAGGACGCAGGCGTGAAGGCAATAGTATCCGGCTTGATCT
CCGCCTCGGCGGACTTCCTGCTTACCTCGTCATTCAACGGCACCGGCAGC
AACGAGTGTCAGAAGCCTCACTCCAAGTACATCGACCTCGTCACGGACTG
GCGGTTGGACGTGGTCGGGAAAGACCTCTCATCTATCGGGCAGATGCTAC
CGCTATTGTCGCTTGAAGAGGGAGGCGAGGACGGCACGCCTCTGGCTCTG
CTTGTGCTGTTGGCGGGACTTGTGGCTCTGGCGGCTGTGTTGGTTTGGAA
CCAGCGTGTGATTGGACGGCCCCGATCGAAGAAGGTCCCGTAG
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Coding sequence (CDS) from alignment at Scaffold_98:344133..349475+

>EsuBft1072_6a-0001 ID=EsuBft1072_6a-0001|Name=EsuBft1072_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1206bp|location=Sequence derived from alignment at Scaffold_98:344133..349475+ (Ectocarpus subulatus male Bft15b)
ATGGGACTACGGGCAATTTGGACGCTTCTTCTGCAAAAGGTGTCGGCCTG
GTGGCTATGGGGAGAAACGAGCATCCCGGACGAGGTTCCCCCTCTCAATT
TCAGTGTGCTTGTTGGGGAGGAGGCTGGCCGAGAGTGGCTGCAAGGGGCG
GAGGCTAGGTCGGGCGATAGCACTGCTGCGCTTGAAGGGGTTCAACAAGT
CGAAGGTCGACGATCGACCAACATTCCGCCACGGTGGGATTCCAGCACCT
GCATGGAGAGTTGGGGGGTGCCGGAGCTTCAGACGGAGGTCGATCCTGGG
GGTTATCTGTTGTTCTCGGAGGGAAGGTACCATCGAATCCTAGATCTCTG
GGCGTTTCGAGCATTGCTGCGAGATCGCCTCCTGTCGGCGGAAGGTTTTC
TGACGGTCCTTTCGGCGGAGTGGGAGCAGACGCTGCTGCCCAGCCTCGTC
ACAGCGGGCAACATCACATCCTTTTTTGAGGAGTACGACCAGTGGCAGGC
GAGAGCGTGGCGGCGGGAACCCGTGGATCTTCTGAGGCCAAACCCCTTCT
ACCTGGGTTTAGTAGGAAAACTCATTGAGGCGCAGGAGGGTTGGAAGGAC
GGCGGGTTCTTGTCTGTGCAGTGGAGGACGGAGACGTCCACCGGAAACTT
GACGGAGTGCTACGGGGTCCACGTGCGGTCGGCGGTAGAAGAGCGGCGTC
TTTCATTGGGATTTAGTCGAAGCCAGGTGTTCTTCAATACCGATCTGGTG
GGGGAGACCTCGACAACCTACAATGCCACGGTGGTGTCCGCTTACAGCGG
CGTCGTGGATGCAATCCGCGGGGACTACCCTGTGGCGATGGATAACACCG
TCTACGACATCCTAAATGATGAACAGGACGCAGGCGTGAAGGCAATAGTA
TCCGGCTTGATCTCCGCCTCGGCGGACTTCCTGCTTACCTCGTCATTCAA
CGGCACCGGCAGCAACGAGTGTCAGAAGCCTCACTCCAAGTACATCGACC
TCGTCACGGACTGGCGGTTGGACGTGGTCGGGAAAGACCTCTCATCTATC
GGGCAGATGCTACCGCTATTGTCGCTTGAAGAGGGAGGCGAGGACGGCAC
GCCTCTGGCTCTGCTTGTGCTGTTGGCGGGACTTGTGGCTCTGGCGGCTG
TGTTGGTTTGGAACCAGCGTGTGATTGGACGGCCCCGATCGAAGAAGGTC
CCGTAG
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