EsuBft1072_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1072_5a-0001
Unique Name	EsuBft1072_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_98	contig	Scaffold_98:353681..356249 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1072_5
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	236
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1072_5a	EsuBft1072_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_98 353681..356249 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1072_5a-0001	EsuBft1072_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_98 355601..355819 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1072_5a-0001-exon	agat-exon-57112	Ectocarpus subulatus male Bft15b	exon	Scaffold_98 353681..354848 -
EsuBft1072_5a-0001-exon	EsuBft1072_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_98 355058..356249 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1072_5a-0001-exon	agat-three_prime_utr-685	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_98 353681..354848 -
EsuBft1072_5a-0001-exon	agat-three_prime_utr-686	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_98 355058..355600 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1072_5a-0001-cds	EsuBft1072_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_98 355601..355819 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1072_5a-0001-exon	agat-five_prime_utr-422	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_98 355820..356249 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_98:353681..356249-
coding sequence from alignment at Scaffold_98:353681..356249-

spliced messenger RNA

>EsuBft1072_5a-0001 ID=EsuBft1072_5a-0001|Name=EsuBft1072_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2360bp|location=Sequence derived from alignment at Scaffold_98:353681..356249- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNCCCCCCCGACGGCGGGAGCGCCGCCCACGCTACATTCG
AGGTGTAGCACACGTGGTCGGTTCACTCCTTGAGCACCTTAACGGTGACG
TCGGCGTGGTTGTCCCCGGTGTTGAGGAAAAAACACGGCACGGTCCTGTC
GTCCATTTTCGTTGCCGGCCGCTCCCACATGAAACCGTACTGGAAGAACG
GGATCAAGCGAAAAGGGCCTCCCTTGCCGGTGTAAAGTTCCTGCGGCGAC
GCACCCCCGGGGTTGGAAGGAGATGCTGACTGGTTCAGTTTCTGCGCGGC
GTCTTTTGCGGACTCCGCCCAGAGCTCATCGCCACGAACACTCAGCCCGC
TGACACGAGAAAATCCTGCGGGGCCAAGCAGCTCCTGGGCGGCCCGGCGG
GATGTGTTGGCCACCTTGAGGCACCTCTGGATGGCGCTCTCGACGACGCC
GTCGTACTGCTGCACGCCGGGAGGGGAGTACTCGAGCGCGATCCCTATGC
TGGCACAGAACTCCTTGAAGTCGCTGCTGGTCCAGAGGGCATCGCAGTCG
CAGCGGATGCACTTGATCGCAGCACCAGCCTTGTGGGCGGCATCCGCGAC
CATGCGCTTGACGACCGCTCGCGCCCCCGACTTACGCCGCATGGCGTAGC
AGACCATCCATCCCGTGGCGGCGTCCACACCGAAGAGCATGTAGTGGTTG
CCACCGATCGTCGCCGTGTACGCGCCGCAGAGGTCGATGTGGAACACGTC
GTTCGGCGCCCTCTTGCCGCGGTACCCGCCCCCCTGCTTCGGCACCGGCG
CCCTCGTCCCTCGCGCCGGCAAGCACCATCGACAGCTGTCCATCGTGCCC
GTGAGGGTAATCCCGTGCTGCTTCGCGGACAGTCTCAAAATGGGTTCGGA
CAAGTGGCCGGCTCGGTTGTGGAACGTGTTAATGTCCATAACCTTTTGTG
CATTGCCAACATTGAAAGGTGTCTTCCCCGAACCCAACATAGCCATGGCG
CGTTCACACTCTTCACTCTCCCACACATCAATCATCTTCGCTGTGTATTC
CGCTACAGAATCCGTCACACGGGGGGGTTCTAGATCGGAATCCATCGCGA
CTGTAAGAGCCGATGCCACAAAGGAAAATGAACTCTCACGGGCACTCTCA
TTCGCAACGTCCATAGAAGGCAGGGATTTGTGGGGAAGGCGGGCGGGTTG
CAAAAAGGGAATCGCTAGAAACGCCACGAATAAAACGCAGTTTTCCGTGC
ATCATTTGCGTACCGTTGGGGTTGATACGGACCTCATGCTTGTGAGACAC
CTTCCATACCGAGAAAAGGTTGAAACCACACCCGGGTACAAACAAGACTT
CTGGCACAGTGACGTCCAAATCCTCCTGTTTCCCGTCGGCTCCGATTCGG
TGGTACCTAAGGTCCAAACTCCCTACGGCGGCAACCTTGATGAGAGCCGA
GTCTCCAATCTGAATAAATCGTTCATCCGGGCCCAAGTGGCGTACATTGT
ACATTGCATCCACTTTGTTAGTAATCATCGCACTGGCTCCAGAATCGGCC
TGCCATTGTTCACTACCAATCGGATTCGGCATGGAGGGTTGGCACAAGCA
AGCTTTTTCAACCGCGGGAGGGCGGGTGAGACGGGCCACGATAACCTTTC
CAGGCACACTTGGTGGAGCAGGGACAGATGCATCACACTCCGGAACGTCG
ACCACTTCATCAGGACTCTCAAGTGCAGCGGGCACGCGGGGTACATCATG
AGTAGACACACCAAACTTCAAGACACCGAACTCATCATCAGAACGTTCAT
GCACAGCAGGCACGCGGGGAACACCAGGCATTGACACATGAGACTCCGCA
CTCGTGAACACGTCAGACTTCGAAAAACCAACATCCTTCTCAAAATCAAT
CTCAGACTTTCCTCGAGGGCACACGCCACGTGCCACGAAGAGATGCAGAG
GGGAATCGCCGGCTGGAGGTAGAGCGTCGCCTGGAGCTGGACAGAGAGAG
GAGGAGGAAGAGGTCGCCTGGGGTGCACCGTAGTGCTGCTGCTGCTCATG
CTGCTGCGAGGTGTCGAAGGCCTCGTAGGCACGCGGTTGTTGGGCGTCCG
ATCCAGCAGCAGAAAGATAGTGTGCTACGTTGCTCACTTCTTGCTGCTGG
TGGAGCCCTCCGCCGTCGGGCAATTGGTGGAAACCGTATCCCCCGCCGGC
GGCGCTGCCGTAGGGACCTCCGCCATGGTCCACTCCGTGAGCCGCGAGCC
CGTACCCGCAGCCTGCCTCAGGAGGTGGTGGGGTCCAGCTGGGCGTAGAT
CCGGGCGCTGACGTGGCCTCCCATCCCGAGCTGATGCCGCCGCCTGATGG
TTCTCCACCT

protein sequence of EsuBft1072_5a-0001

>EsuBft1072_5 ID=EsuBft1072_5|Name=EsuBft1072_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=72bp
MALSTTPSYCCTPGGEYSSAIPMLAQNSLKSLLVQRASQSQRMHLIAAPA
LWAASATMRLTTARAPDLRRMA

mRNA from alignment at Scaffold_98:353681..356249-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1072_5a-0001 ID=EsuBft1072_5a-0001|Name=EsuBft1072_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2569bp|location=Sequence derived from alignment at Scaffold_98:353681..356249- (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNCCCCCCCGACGGCGGGAGCGCCGCCCACGCTACATTCG
AGGTGTAGCACACGTGGTCGGTTCACTCCTTGAGCACCTTAACGGTGACG
TCGGCGTGGTTGTCCCCGGTGTTGAGGAAAAAACACGGCACGGTCCTGTC
GTCCATTTTCGTTGCCGGCCGCTCCCACATGAAACCGTACTGGAAGAACG
GGATCAAGCGAAAAGGGCCTCCCTTGCCGGTGTAAAGTTCCTGCGGCGAC
GCACCCCCGGGGTTGGAAGGAGATGCTGACTGGTTCAGTTTCTGCGCGGC
GTCTTTTGCGGACTCCGCCCAGAGCTCATCGCCACGAACACTCAGCCCGC
TGACACGAGAAAATCCTGCGGGGCCAAGCAGCTCCTGGGCGGCCCGGCGG
GATGTGTTGGCCACCTTGAGGCACCTCTGGATGGCGCTCTCGACGACGCC
GTCGTACTGCTGCACGCCGGGAGGGGAGTACTCGAGCGCGATCCCTATGC
TGGCACAGAACTCCTTGAAGTCGCTGCTGGTCCAGAGGGCATCGCAGTCG
CAGCGGATGCACTTGATCGCAGCACCAGCCTTGTGGGCGGCATCCGCGAC
CATGCGCTTGACGACCGCTCGCGCCCCCGACTTACGCCGCATGGCGTAGC
AGACCATCCATCCCGTGGCGGCGTCCACACCGAAGAGCATGTAGTGGTTG
CCACCGATCGTCGCCGTGTACGCGCCGCAGAGGTCGATGTGGAACACGTC
GTTCGGCGCCCTCTTGCCGCGGTACCCGCCCCCCTGCTTCGGCACCGGCG
CCCTCGTCCCTCGCGCCGGCAAGCACCATCGACAGCTGTCCATCGTGCCC
GTGAGGGTAATCCCGTGCTGCTTCGCGGACAGTCTCAAAATGGGTTCGGA
CAAGTGGCCGGCTCGGTTGTGGAACGTGTTAATGTCCATAACCTTTTGTG
CATTGCCAACATTGAAAGGTGTCTTCCCCGAACCCAACATAGCCATGGCG
CGTTCACACTCTTCACTCTCCCACACATCAATCATCTTCGCTGTGTATTC
CGCTACAGAATCCGTCACACGGGGGGGTTCTAGATCGGAATCCATCGCGA
CTGTAAGAGCCGATGCCACAAAGGAAAATGAACTCTCACGGGCACTCTCA
TTCGCAACGTCCATAGAAGGCAGGGATTTGTGGGGAAGGCGGGTTGCAAA
AAGGGAATCNGCGCGTTCACACTCTTCACTCTCCCACACATCAATCATCT
TCGCTGTGTATTCCGCTACAGAATCCGTCACACGGGGGGGTTCTAGATCG
GAATCCATCGCGACTGTAAGAGCCGATGCCACAAAGGAAAATGAACTCTC
ACGGGCACTCTCATTCGCAACGTCCATAGAAGGCAAGGATTTGTGGGGAA
GGCGGGTTGCAAAAAGGGAATCGCTAGAAACGCCACGAATAAAACGCAGT
TTTCCGTGCATCATTTGCGTACCGTTGGGGTTGATACGGACCTCATGCTT
GTGAGACACCTTCCATACCGAGAAAAGGTTGAAACCACACCCGGGTACAA
ACAAGACTTCTGGCACAGTGACGTCCAAATCCTCCTGTTTCCCGTCGGCT
CCGATTCGGTGGTACCTAAGGTCCAAACTCCCTACGGCGGCAACCTTGAT
GAGAGCCGAGTCTCCAATCTGAATAAATCGTTCATCCGGGCCCAAGTGGC
GTACATTGTACATTGCATCCACTTTGTTAGTAATCATCGCACTGGCTCCA
GAATCGGCCTGCCATTGTTCACTACCAATCGGATTCGGCATGGAGGGTTG
GCACAAGCAAGCTTTTTCAACCGCGGGAGGGCGGGTGAGACGGGCCACGA
TAACCTTTCCAGGCACACTTGGTGGAGCAGGGACAGATGCATCACACTCC
GGAACGTCGACCACTTCATCAGGACTCTCAAGTGCAGCGGGCACGCGGGG
TACATCATGAGTAGACACACCAAACTTCAAGACACCGAACTCATCATCAG
AACGTTCATGCACAGCAGGCACGCGGGGAACACCAGGCATTGACACATGA
GACTCCGCACTCGTGAACACGTCAGACTTCGAAAAACCAACATCCTTCTC
AAAATCAATCTCAGACTTTCCTCGAGGGCACACGCCACGTGCCACGAAGA
GATGCAGAGGGGAATCGCCGGCTGGAGGTAGAGCGTCGCCTGGAGCTGGA
CAGAGAGAGGAGGAGGAAGAGGTCGCCTGGGGTGCACCGTAGTGCTGCTG
CTGCTCATGCTGCTGCGAGGTGTCGAAGGCCTCGTAGGCACGCGGTTGTT
GGGCGTCCGATCCAGCAGCAGAAAGATAGTGTGCTACGTTGCTCACTTCT
TGCTGCTGGTGGAGCCCTCCGCCGTCGGGCAATTGGTGGAAACCGTATCC
CCCGCCGGCGGCGCTGCCGTAGGGACCTCCGCCATGGTCCACTCCGTGAG
CCGCGAGCCCGTACCCGCAGCCTGCCTCAGGAGGTGGTGGGGTCCAGCTG
GGCGTAGATCCGGGCGCTGACGTGGCCTCCCATCCCGAGCTGATGCCGCC
GCCTGATGGTTCTCCACCT

Coding sequence (CDS) from alignment at Scaffold_98:353681..356249-

>EsuBft1072_5a-0001 ID=EsuBft1072_5a-0001|Name=EsuBft1072_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=219bp|location=Sequence derived from alignment at Scaffold_98:353681..356249- (Ectocarpus subulatus male Bft15b)
ATGGCGCTCTCGACGACGCCGTCGTACTGCTGCACGCCGGGAGGGGAGTA
CTCGAGCGCGATCCCTATGCTGGCACAGAACTCCTTGAAGTCGCTGCTGG
TCCAGAGGGCATCGCAGTCGCAGCGGATGCACTTGATCGCAGCACCAGCC
TTGTGGGCGGCATCCGCGACCATGCGCTTGACGACCGCTCGCGCCCCCGA
CTTACGCCGCATGGCGTAG