EsuBft1072_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1072_4a-0001
Unique Name	EsuBft1072_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_98	contig	Scaffold_98:356878..359047 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	40559.M7U181
ProteomeId	EsuBft1072_4
Protein domains	IPR013103
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	4751\|Fungi
Length	1332
Hectar predicted targeting category	other localisation
Evalue	6.04e-31
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3NUZ7@4751\|Fungi,3QNZW@4890\|Ascomycota,20YYK@147548\|Leotiomycetes
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1072_4a	EsuBft1072_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_98 356878..359047 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1072_4a-0001-exon	EsuBft1072_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_98 356878..357312 +
EsuBft1072_4a-0001-exon	agat-exon-57111	Ectocarpus subulatus male Bft15b	exon	Scaffold_98 357607..358145 +
EsuBft1072_4a-0001-exon	agat-exon-57110	Ectocarpus subulatus male Bft15b	exon	Scaffold_98 358690..359047 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1072_4a-0001-cds	EsuBft1072_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_98 356878..357312 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1072_4a-0001	EsuBft1072_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_98 356878..359047 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_98:356878..359047+
coding sequence from alignment at Scaffold_98:356878..359047+

spliced messenger RNA

>EsuBft1072_4a-0001 ID=EsuBft1072_4a-0001|Name=EsuBft1072_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1332bp|location=Sequence derived from alignment at Scaffold_98:356878..359047+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCTGCTGGCTCAAGCAAACGAAGACGTCCTCCTCTCCATGCTGGA
TGCTCTGCGAGTCATGAACGGCAAGACAATGCTCCGGCCAGGATTGGAGG
GGGGCGGCGAGAAGGGGGGCGGAGGCGGGCAGCTCGCGAGGAGTGAGGGC
GTGGTAGAGAGCACGGGAAAGCTGCTGGAGGTGGACACCGGCGAGAAGGG
ACGCATGGGGAATGGTTGGACGATCGGTCCGTCTGAGCAGGGCGTTCCGC
TCAGACTTGTGGCGCGTCTTGCGACGCGCGACGACCTCGACTCAGCTGTG
CGCGAGATGGAGCCGCCTCTTTTGCGACCCGACATGCCGCGCTGCCACAC
CAAGGACCTCCGAGTACCCCAGACTTTCAAAGAGGCAAAGGAGAGCGAGC
ACAGCGAGCAGTTCATGGATGCGGCCAAGCGTGAGGCGTTTGTGAGGGCC
CCTCTCAAGGAAGATATTTTCATGCGACTGCCGGAAGTATGTGGTGCGTT
GTCGGGGAAGATAGTGCAGTTGAACAAGAGCCTTTATGGCTTGAGGCAGG
CATCTAGAGAGTGGTACGCGTTACTGAAGAAGTGCCTTTTGGCTTTGGGG
TTCGAGCAGTGCATGGCTGATTCGTGTGTTTTTCGTTTAGTCGAAGGGGG
GGAAGTAGTGTTGCTTCTCGTAGTACACGTAGACGATATTTTTGCAGTGG
GGACGAAGGAGAGGTGTGATCAATTCGGCAAGGACCTGGGAGAGTACGTG
CCAGTAAAGTCTCTAGGGGAGTTGAAGTGGTACTCTGGTTGCTATTACGA
GAGGGACAGAGAGGCAGGCAGGCTGACAATTTCACAGCAGACATACACCG
AAGAGCTGGGAGAGAGATGTGGTGTCGAGTGGGGGGGAGGGCATTCCTTT
GCCCACCACCTGGAGACTTTGGGACTTCGACTTGGACNGAGCCTTTATGG
CTTGAGGCAGGCATCTAGAGAGTGGACTACTTCTGTGGGGATTTCTTTTC
AGAGGAGGACGGTTTCGGGATTCTCTTTGATTGCATTTGTCGACGCGGAC
TACGCTTCCCGTGCGGCAGACCGTAGGTCGGTTTCGGGAGTTGTAGTGAT
GTGTGTAGGAGGGGCGATTGCATGGTTCTCCAAGACTCAGAAGTGTGTGA
CTTTGTCTACCACGCAGGCAGAATACGTGGCGATGGCGGACATGGGGAAG
GAGATTTTGTTTTTGAGGCAGGTTTGGCGTTTCATGTTGCCTAAGGAGTT
GCGGCCTTGTATTCCACCGTATGAAGATAACGAAGGGGCTATCCAGATCG
CAAAACACCCTATCTCGAATTCCAACTCGTAG

protein sequence of EsuBft1072_4a-0001

>EsuBft1072_4 ID=EsuBft1072_4|Name=EsuBft1072_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=443bp
MGLLAQANEDVLLSMLDALRVMNGKTMLRPGLEGGGEKGGGGGQLARSEG
VVESTGKLLEVDTGEKGRMGNGWTIGPSEQGVPLRLVARLATRDDLDSAV
REMEPPLLRPDMPRCHTKDLRVPQTFKEAKESEHSEQFMDAAKREAFVRA
PLKEDIFMRLPEVCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALG
FEQCMADSCVFRLVEGGEVVLLLVVHVDDIFAVGTKERCDQFGKDLGEYV
PVKSLGELKWYSGCYYERDREAGRLTISQQTYTEELGERCGVEWGGGHSF
AHHLETLGLRLGXSLYGLRQASREWTTSVGISFQRRTVSGFSLIAFVDAD
YASRAADRRSVSGVVVMCVGGAIAWFSKTQKCVTLSTTQAEYVAMADMGK
EILFLRQVWRFMLPKELRPCIPPYEDNEGAIQIAKHPISNSNS

mRNA from alignment at Scaffold_98:356878..359047+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1072_4a-0001 ID=EsuBft1072_4a-0001|Name=EsuBft1072_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2170bp|location=Sequence derived from alignment at Scaffold_98:356878..359047+ (Ectocarpus subulatus male Bft15b)
ATGGGGCTGCTGGCTCAAGCAAACGAAGACGTCCTCCTCTCCATGCTGGA
TGCTCTGCGAGTCATGAACGGCAAGACAATGCTCCGGCCAGGATTGGAGG
GGGGCGGCGAGAAGGGGGGCGGAGGCGGGCAGCTCGCGAGGAGTGAGGGC
GTGGTAGAGAGCACGGGAAAGCTGCTGGAGGTGGACACCGGCGAGAAGGG
ACGCATGGGGAATGGTTGGACGATCGGTCCGTCTGAGCAGGGCGTTCCGC
TCAGACTTGTGGCGCGTCTTGCGACGCGCGACGACCTCGACTCAGCTGTG
CGCGAGATGGAGCCGCCTCTTTTGCGACCCGACATGCCGCGCTGCCACAC
CAAGGACCTCCGAGTACCCCAGACTTTCAAAGAGGCAAAGGAGAGCGAGC
ACAGCGAGCAGTTCATGGATGCGGCCAAGCGTGAGGTGTCTTGATTGCTA
GAAGCAGACGCGTTTATGATTGTTGGACCGTAGCAGCGAATAGACAATTG
CATCAAGTCGAAGTTGATTTCTGATTGGAAGGTAGATGCGTTCGGCTTTC
CTACGAAGGCCAAGGCTAGACTTGTTGCGAGAGGAGACATGCAGAAGGAG
AACATTNAGAAGGAGTACATTGACTTTGGTGATTTGTATGCACCTACTGT
AGCTTCATCTAGTGTTCGTATGTTGGCAGCTTTGGCGTGTGAGCTTGACT
TGGAGTTGTGACATTTCGATATCGACCAGGCGTTTGTGAGGGCCCCTCTC
AAGGAAGATATTTTCATGCGACTGCCGGAAGTATGTGGTGCGTTGTCGGG
GAAGATAGTGCAGTTGAACAAGAGCCTTTATGGCTTGAGGCAGGCATCTA
GAGAGTGGTACGCGTTACTGAAGAAGTGCCTTTTGGCTTTGGGGTTCGAG
CAGTGCATGGCTGATTCGTGTGTTTTTCGTTTAGTCGAAGGGGGGGAAGT
AGTGTTGCTTCTCGTAGTACACGTAGACGATATTTTTGCAGTGGGGACGA
AGGAGAGGTGTGATCAATTCGGCAAGGACCTGGGAGAGTACGTGCCAGTA
AAGTCTCTAGGGGAGTTGAAGTGGTACTCTGGTTGCTATTACGAGAGGGA
CAGAGAGGCAGGCAGGCTGACAATTTCACAGCAGACATACACCGAAGAGC
TGGGAGAGAGATGTGGTGTCGAGTGGGGGGGAGGGCATTCCTTTGCCCAC
CACCTGGAGACTTTGGGACTTCGACTTGGACNGAGCCTTTATGGCTTGAG
GCAGGCATCTAGAGAGTGGTACGCGTTACTGAAGAAGTGCCTTTTGGCTT
TGGGGTTCGAGCAGTGCATGGCTGATTCGTGTGTTTTTCGTTTAGTCGAA
AGGGGGGAAGTAGTGTTGCTTCTCGTAGTACAAGTAGACGGTATTTTTGC
AGTGGGGACGAAGGAGAGGTGTGATCAATTCGGCAAGGACCTGGGAGAGT
ACGTGCCAGTGAAGTCTCTAGGGGAGTTGAAGTGGTACTCCGGTTGCTAT
TACGAGAGGGACAGAGAGGCAGGCAGGCTGACAATTTCACAGCAGACATA
CACCGAAGAGCTGGGAGAGAGATGTGGTGTCGAGTGGGGGGGAGGGCATT
CCTTTGCCCACCACCTGGAGACTTTGGGACTTCGACTTGGACGAGCCGAG
CGTAGAGTACTCTTTTCGCGCACTGGTCGGTTCGCTGTTGTGGATTGCCT
TGTTGACTAGGCCGGATATCGCGAATTCGGTGAGAGCAGAGGCGAGGTAC
TGTAGTGCACCGAAGTTGATCCACTGGAAGGCTGCACTTAGCATTTAAGG
ATATGCAGTTAGGACTACTTCTGTGGGGATTTCTTTTCAGAGGAGGACGG
TTTCGGGATTCTCTTTGATTGCATTTGTCGACGCGGACTACGCTTCCCGT
GCGGCAGACCGTAGGTCGGTTTCGGGAGTTGTAGTGATGTGTGTAGGAGG
GGCGATTGCATGGTTCTCCAAGACTCAGAAGTGTGTGACTTTGTCTACCA
CGCAGGCAGAATACGTGGCGATGGCGGACATGGGGAAGGAGATTTTGTTT
TTGAGGCAGGTTTGGCGTTTCATGTTGCCTAAGGAGTTGCGGCCTTGTAT
TCCACCGTATGAAGATAACGAAGGGGCTATCCAGATCGCAAAACACCCTA
TCTCGAATTCCAACTCGTAG

Coding sequence (CDS) from alignment at Scaffold_98:356878..359047+

>EsuBft1072_4a-0001 ID=EsuBft1072_4a-0001|Name=EsuBft1072_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1332bp|location=Sequence derived from alignment at Scaffold_98:356878..359047+ (Ectocarpus subulatus male Bft15b)
ATGGGGCTGCTGGCTCAAGCAAACGAAGACGTCCTCCTCTCCATGCTGGA
TGCTCTGCGAGTCATGAACGGCAAGACAATGCTCCGGCCAGGATTGGAGG
GGGGCGGCGAGAAGGGGGGCGGAGGCGGGCAGCTCGCGAGGAGTGAGGGC
GTGGTAGAGAGCACGGGAAAGCTGCTGGAGGTGGACACCGGCGAGAAGGG
ACGCATGGGGAATGGTTGGACGATCGGTCCGTCTGAGCAGGGCGTTCCGC
TCAGACTTGTGGCGCGTCTTGCGACGCGCGACGACCTCGACTCAGCTGTG
CGCGAGATGGAGCCGCCTCTTTTGCGACCCGACATGCCGCGCTGCCACAC
CAAGGACCTCCGAGTACCCCAGACTTTCAAAGAGGCAAAGGAGAGCGAGC
ACAGCGAGCAGTTCATGGATGCGGCCAAGCGTGAGGCGTTTGTGAGGGCC
CCTCTCAAGGAAGATATTTTCATGCGACTGCCGGAAGTATGTGGTGCGTT
GTCGGGGAAGATAGTGCAGTTGAACAAGAGCCTTTATGGCTTGAGGCAGG
CATCTAGAGAGTGGTACGCGTTACTGAAGAAGTGCCTTTTGGCTTTGGGG
TTCGAGCAGTGCATGGCTGATTCGTGTGTTTTTCGTTTAGTCGAAGGGGG
GGAAGTAGTGTTGCTTCTCGTAGTACACGTAGACGATATTTTTGCAGTGG
GGACGAAGGAGAGGTGTGATCAATTCGGCAAGGACCTGGGAGAGTACGTG
CCAGTAAAGTCTCTAGGGGAGTTGAAGTGGTACTCTGGTTGCTATTACGA
GAGGGACAGAGAGGCAGGCAGGCTGACAATTTCACAGCAGACATACACCG
AAGAGCTGGGAGAGAGATGTGGTGTCGAGTGGGGGGGAGGGCATTCCTTT
GCCCACCACCTGGAGACTTTGGGACTTCGACTTGGACNGAGCCTTTATGG
CTTGAGGCAGGCATCTAGAGAGTGGACTACTTCTGTGGGGATTTCTTTTC
AGAGGAGGACGGTTTCGGGATTCTCTTTGATTGCATTTGTCGACGCGGAC
TACGCTTCCCGTGCGGCAGACCGTAGGTCGGTTTCGGGAGTTGTAGTGAT
GTGTGTAGGAGGGGCGATTGCATGGTTCTCCAAGACTCAGAAGTGTGTGA
CTTTGTCTACCACGCAGGCAGAATACGTGGCGATGGCGGACATGGGGAAG
GAGATTTTGTTTTTGAGGCAGGTTTGGCGTTTCATGTTGCCTAAGGAGTT
GCGGCCTTGTATTCCACCGTATGAAGATAACGAAGGGGCTATCCAGATCG
CAAAACACCCTATCTCGAATTCCAACTCGTAG