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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 164328.Phyra85518 |
| ProteomeId | EsuBft1071_9 |
| Protein domains | IPR013103 |
| Protein domains | IPR001878 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 6 |
| Max annot lvl | 4776|Peronosporales |
| Length | 2349 |
| Hectar predicted targeting category | other localisation |
| Evalue | 8.78e-45 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,3QH4V@4776|Peronosporales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | GAG-pre-integrase domain |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0003676 |
| GO | 0003824 |
| GO | 0008270 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1071_9a-0001 ID=EsuBft1071_9a-0001|Name=EsuBft1071_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2349bp|location=Sequence derived from alignment at Scaffold_633:227290..231168- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAAGCAAATGTTCAACTTTACGATCCCCACACACAGCAGCACAAACCC CATCGAGCACCTATACTCGCTCGAGCTGCTGTATTCACGCCTGCTCGAAA AAGGGCTCAATGCTGAACAGCCCTTCGTTCTCGCCCACTTCGTTGGTTCC CTCCCACCCGAGTACCAACAAGCGAAGTTCCTGTTGGAGACAGCAACGGC GCTGGATAGGGCCGAGATCGTCAGGATCTGGAGCACGGTGCACGCGAGCC TTCCGGAGGGGAGGAAGGCCTCGAAGGGCCAGCGGAGGGCAGAGCACGCT CTCCTCGCGAGCGGCGGTAGCGGTGGGGGAATAGCGCCGGGCCACGGCAA CGGCGGCCGCCGCAAGGGTGGCGGCGGCGGCGGCGGTGGCAACCAGAAGG GGAGTGGCGCGAAGGCTGGTGGCGGCGGCGGAGGCGGCGACGACGATGCG GGTGGCATGCGCGGTCGCTGTTTCCGGTGCGGCAGGAAGGGCCACCAGGT GGCCGACTACACCGAGAGCAAGCCCGTGCGATGTGAGACATGCAAGGGCT ACGGGCACGACAAGAGTAAGTGCCCGACCGAGGAGGCGGTGCTCGTGGTG GAAGTGCCGGCGGGGGGGGCGTCTGCGGACGCCACAGCACTGGACGTGGC AGAAGAAGCGCTGGTGGTCGGTGACATCTCAGGCGAGTGTCACAAAGTCG TTGGTCGAGGGGGTGTAGAGCAGGCTAGGCGGGGTAGATGGGTGATGAGG GAAGAGTTTGAAGGGCACGTGGGCACGGGGACGTTTCCATTCGTAGACGG CGCGCCAGAGGGGCGCAGGCCTGTGAGCTCAAAGTGGTGTTTTAGTTGGA AGACCAACAAGGAAGGGAAGATAGAAAAGTTCAGAGCGCGTCTGGTGGCT AGGGGGTTGTCGCAAATCCCCAACGTCGACTATTTCCATTCGTCTTCCCC TTGCTCATCATCCGCATCCAATGAATTGATGCTTGCGGTAGCAAACGAGA AGGGCATAAACCTCAATCACTGGGACGTGAAGCAGGCGTACACACACGCC ACGCTAGACGAGGGTTTTTTTCTGAGGCTCCCCGCTGGGTGCGGGGACAA ATCGCATAAGATTGTTAAGGCTGAGCGTGCGATTTACGGTCTGAAGCAGA GCGACGAAGTCGTGGTGATGATTATCGTGATCTACGTGGATGACATTTTG GTGGCTGTGTCTGACGAGGACTTCGAGGAGTTGCTTGTTTCTCTCAACAA GAAATTTCCCACCAAAAGTCTTGGAGAATGCGAATGGTTTGACGGGTGCG CCATTGAGAGAGATGTGGAGGCTGGGACTCTTAGAATCCCCCAAACCGCG TACATTGATAGCATGGTGAAACGCATTGATGTACAATCGACCTCCCGCAT CCCTGCTACCCCTGGTGTCGACCTAGGACCGAAGCGAGATGACGAGAAGG GAGGGGAGTGGCCGGTGAGGGAGGCAATCGGCAGCATGATGTGGCGTTCG GTGCAAGGGTTGGCGACGACGGTTGGAAGTACCGTAGTCAGCCATGGTAG TAAGACACAAAGCATCGTGTCTTTGTCTTCGACGGAATCCGAATACATTG CTGCCGGGGAGGGCCTCAAGGACGCGTTGTTTGTGCGTGCTGTGCTTTCG TTTGTTGCCCCAGAGACCAGTGGTAGCAGTATCCAGGCCCTTGAGGACAA CCAGGGGGCCATAGCGTTGGTGCAGAACCCCCTCAGCTCAGGTCGCACGA AACACATCGACGTGAGATTTCATTTCATCCGCGGATTGTTTATGTCGGGG GATATTTCGGTCAAGTTTATTCCGACTACGGAGCAACACGCGGACCTCCT AACCAAGGCCCTTAACAGGGCTAGTCTGCAGTACCACCGGCGCAAGTCAC CCCAGACGGACCACCCAAGTCCCCTCGGCAAAGCCCCACGGGCAACGAAG CCAATACCTCCGCCATGTCCGCGCCTCCCGTCGAAGACCCACCTGAGCCG ACCCGATAGCAATGGTGATTCGGCGTTGACCAACACTGGCGCTGCTCTGG ACTCTGCCGATGGCAAGCGGCAGTTCAACGGCGGGGGTAGTCAGATGGCT TTCAAAGCGAACGCGGATGCATGCATGGAATCGAAGGGTGACGCTGATTC GACACGAGGCGGTGGTCTCGACGGCAAGACCATGGACAGAAGGGAGTCCG GGATACTGGCACAGGATGGTCACGACAACAGGAAGCGGTCCCGTGACGAA TCAACGGAGGACGCCTCGGCCGAAACGCATGGTAGCGGGGAAAGAGACCT AAGACAGGCAGCGACTCGGAGGGTGCATCAGTTTCCGAAGGTGATTTGA back to topprotein sequence of EsuBft1071_9a-0001 >EsuBft1071_9 ID=EsuBft1071_9|Name=EsuBft1071_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=782bp
MKQMFNFTIPTHSSTNPIEHLYSLELLYSRLLEKGLNAEQPFVLAHFVGS LPPEYQQAKFLLETATALDRAEIVRIWSTVHASLPEGRKASKGQRRAEHA LLASGGSGGGIAPGHGNGGRRKGGGGGGGGNQKGSGAKAGGGGGGGDDDA GGMRGRCFRCGRKGHQVADYTESKPVRCETCKGYGHDKSKCPTEEAVLVV EVPAGGASADATALDVAEEALVVGDISGECHKVVGRGGVEQARRGRWVMR EEFEGHVGTGTFPFVDGAPEGRRPVSSKWCFSWKTNKEGKIEKFRARLVA RGLSQIPNVDYFHSSSPCSSSASNELMLAVANEKGINLNHWDVKQAYTHA TLDEGFFLRLPAGCGDKSHKIVKAERAIYGLKQSDEVVVMIIVIYVDDIL VAVSDEDFEELLVSLNKKFPTKSLGECEWFDGCAIERDVEAGTLRIPQTA YIDSMVKRIDVQSTSRIPATPGVDLGPKRDDEKGGEWPVREAIGSMMWRS VQGLATTVGSTVVSHGSKTQSIVSLSSTESEYIAAGEGLKDALFVRAVLS FVAPETSGSSIQALEDNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFMSG DISVKFIPTTEQHADLLTKALNRASLQYHRRKSPQTDHPSPLGKAPRATK PIPPPCPRLPSKTHLSRPDSNGDSALTNTGAALDSADGKRQFNGGGSQMA FKANADACMESKGDADSTRGGGLDGKTMDRRESGILAQDGHDNRKRSRDE STEDASAETHGSGERDLRQAATRRVHQFPKVI back to topmRNA from alignment at Scaffold_633:227290..231168- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1071_9a-0001 ID=EsuBft1071_9a-0001|Name=EsuBft1071_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3879bp|location=Sequence derived from alignment at Scaffold_633:227290..231168- (Ectocarpus subulatus male Bft15b) ATGAAGCAAATGTTCAACTTTACGATCCCCACACACAGCAGCACAAACCC
CATCGAGCACCTATACTCGCTCGAGCTGCTGTATTCACGCCTGCTCGAAA
AAGGGCTCAATGCTGAACAGCCCTTCGTTCTCGCCCACTTCGTTGGTTCC
CTCCCACCCGAGTACCAACAAGCGAAGTTCCTGTTGGAGACAGCAACGGC
GCTGGATAGGGCCGAGATCGTCAGGATCTGGAGCACGGTGCACGCGAGCC
TTCCGGAGGGGAGGAAGGCCTCGAAGGGCCAGCGGAGGGCAGAGCACGCT
CTCCTCGCGAGCGGCGGTAGCGGTGGGGGAATAGCGCCGGGCCACGGCAA
CGGCGGCCGCCGCAAGGGTGGCGGCGGCGGCGGCGGTGGCAACCAGAAGG
GGAGTGGCGCGAAGGCTGGTGGCGGCGGCGGAGGCGGCGACGACGATGCG
GGTGGCATGCGCGGTCGCTGTTTCCGGTGCGGCAGGAAGGGCCACCAGGT
GGCCGACTACACCGAGAGCAAGCCCGTGCGATGTGAGACATGCAAGGGCT
ACGGGCACGACAAGAGTAAGTGCCCGACCGAGGAGGCGGTGCTCGTGGTG
GAAGTGCCGGCGGGGGGGGCGTCTGCGGACGCCACAGCACTGGACGTGGC
AGAAGAAGCGCTGGTGGTCGGTGACATCTCAGGCGAGTGTCACAAAGTCG
TTGGTCGAGGGGGTGTAGAGCAGGCTAGGCGGGGTAGGTATGTTGCCGAT
ACCGGCGCTACCACCCACATGTTCGCGAACTCAGATGGGTTCGTTCGTTA
CGAAGAGTGTGATCGACGTGTGCGCGTCGCCGCCGGAGAAACCTTCCCTA
TCGTAGGGTATGGCGACGTGACGGTAACCCTTAGCTCGCGCGACGGTACA
ACCGACCTGTTGTTGAAACGGGTTGCACACGTTCCCCGACTAGATTACAA
CCTCTTATCTCTCACTTCCCCCTTCGGCGATGGGTTCGAACCAAAACCCT
CAAAAAACACGAGTTGGAATTGGAGAGGGGGGGGGGGAGTCGGTGTACCT
CCCCCGATGCGGTAATCTGTACGTCCAAAACTGTTTCCGCACACACACCG
AACATGTCTATGCCGCAATTGCTCCTGGCAACGCGACGCTGCGCGCCAAG
AGGCGGAGGATTTCCTGCTGGGTGCGGTGGACTTCATGCTCAACTCGCTA
GACGCCTTCGAGACGGCTCTAGCGTCCCACGAGCTAAGTGAATTCCCCAT
GGGCAAGCGTCCGAGTGATGTAGAACCCCCCCCCCATGACCGTAGCCGGC
GTTGCCAAGTCTGTGTACAGAGAGGGGTGGGAATAGGTGATGAGGGAAGA
GTTTGAAGGGCACGTGGGCACGGGGACGTTTCCATTCGTAGACGGCGCGC
CAGAGGGGCGCAGGCCTGTGAGCTCAAAGTGGTGTTTTAGTTGGAAGACC
AACAAGGAAGGGAAGATAGAAAAGTTCAGAGCGCGTCTGGTGGCTAGGGG
GTTGTCGCAAATCCCCAACGTCGACTATTTCCATTCGTCTTCCCCTTGCT
CATCATCCGCATCCAATGAATTGATGCTTGCGGTAGCAAACGAGAAGGGC
ATAAACCTCAATCACTGGGACGTGAAGCAGGCGTACACACACGCCACGCT
AGACGAGGGTTTTTTTCTGAGGCTCCCCGCTGGGTGCGGGGACAAATCGC
ATAAGATTGTTAAGGCTGAGCGTGCGATTTACGGTCTGAAGCAGAGCGGT
AGGCAGTGGGGGTACCACGCTGCTGATACGCTAGTCGAGAACGGGTTCGA
GTAGTGCAAAGCGGACCCGTGTGTTTTCCGCAAGATGGTAGACGAAGTCG
TGGTGATGATTATCGTGATCTACGTGGATGACATTTTGGTGGCTGTGTCT
GACGAGGACTTCGAGGAGTTGCTTGTTTCTCTCAACAAGAAATTTCCCAC
CAAAAGTCTTGGAGAATGCGAATGGTTTGACGGGTGCGCCATTGAGAGAG
ATGTGGAGGCTGGGACTCTTAGAATCCCCCAAACCGCGTACATTGATAGC
ATGGTGAAACGCATTGATGTACAATCGACCTCCCGCATCCCTGCTACCCC
TGGTGTCGACCTAGGACCGAAGCGAGATGACGAGAAGGGAGGGGAGTGGC
CGGTGAGGGAGGCAATCGGCAGCATGATGTGGTTGTCGACATTCTCGCGT
CCAGAGGTCTTGTTCTCTGTCCGTGCGGTAGCGCGCCACGCCCACGCCTC
GGCGAAGAGGCACTGGGATGCCATCCAGAAGATCCTCGGCTACTTGAAGG
AGGCGAGGGACCTCGGCATCACCTAAAAACGGGGATCGGGGATGGGGCTG
GCCGTGTACGTAGACGCTGGCTACGCTGACACGGAGGATAGGCGTTCGGT
GCAAGGGTTGGCGACGACGGTTGGAAGTACCGTAGTCAGCCATGGTAGTA
AGACACAAAGCATCGTGTCTTTGTCTTCGACGGAATCCGAATACATTGCT
GCCGGGGAGGGCCTCAAGGACGCGTTGTTTGTGCGTGCTGTGCTTTCGTT
TGTTGCCCCAGAGACCAGTGGTAGCAGTATCCAGGCCCTTGAGGACAACC
AGGGGGCCATAGCGTTGGTGCAGAACCCCCTCAGCTCAGGTCGCACGAAA
CACATCGACGTGAGATTTCATTTCATCCGCGGATTGTTTATGTCGGGGGA
TATTTCGGTCAAGTTTATTCCGACTACGGAGCAACACGCGGACCTCCTAA
CCAAGGCCCTTAACAGGGCTAGTCTGCAGTACCACCGGCGCAAGTTTATG
AATTTGCCAGAGTAGCTGTAGCAATTTCTAGCACTTGGGAGAGGTCACGT
TTTCCATGCGGGGAAAGGCGCATAACTGTTGCGGTCTGTGTACCAATGGC
AGGAGTAGGGGGCGTTGGGAAACCATCGTCCGAGGGAACATAGTTCCTCG
CGTTCTTGTCTTCGCCTTGACCTTACTAGTATGTGCGGCCGTTGTGATCC
GCTCTGATAGCGACGGTCTTTGTGGTGGTAGGGGTTAAATTTAGGGGTGT
TACCCGGACGCCGGGTTTCCCCTCCATACATTACCATGTTGGTATTTTCT
TATGTATCCAGGGGCGTCCTTGCCCCGTTGATGGTTAGTCACTTGCGTGA
AGGACCAGGGAGGGTGTTCGTGGGTCTGCGAACATTGGTGTTGGATATAC
GTGCTGTATGATTTGGTGTCACGCAGATTGGTAAGATTGCCGTTTGGTAG
GGGACACCGCGATGATTCACGGGGCCCCTCCTTGCTGTAGAAGCCGCTCT
TTGAGCACTCCCTCCTTCGTCCGTGTGAAGGACGATCGTCTACCTCTCGT
GAAGTTAATACATCACCAAAACAGTCTCACCCGATAAATAAGTGGCGTAG
GCCGCAAACACGGCAAAGCACGAAGGTCACCCCAGACGGACCACCCAAGT
CCCCTCGGCAAAGCCCCACGGGCAACGAAGCCAATACCTCCGCCATGTCC
GCGCCTCCCGTCGAAGACCCACCTGAGCCGACCCGATAGCAATGGTGATT
CGGCGTTGACCAACACTGGCGCTGCTCTGGACTCTGCCGATGGCAAGCGG
CAGTTCAACGGCGGGGGTAGTCAGATGGCTTTCAAAGCGAACGCGGATGC
ATGCATGGAATCGAAGGGTGACGCTGATTCGACACGAGGCGGTGGTCTCG
ACGGCAAGACCATGGACAGAAGGGAGTCCGGGATACTGGCACAGGATGGT
CACGACAACAGGAAGCGGTCCCGTGACGAATCAACGGAGGACGCCTCGGC
CGAAACGCATGGTAGCGGGGAAAGAGACCTAAGACAGGCAGCGACTCGGA
GGGTGCATCAGTTTCCGAAGGTGATTTGA back to topCoding sequence (CDS) from alignment at Scaffold_633:227290..231168- >EsuBft1071_9a-0001 ID=EsuBft1071_9a-0001|Name=EsuBft1071_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2349bp|location=Sequence derived from alignment at Scaffold_633:227290..231168- (Ectocarpus subulatus male Bft15b) ATGAAGCAAATGTTCAACTTTACGATCCCCACACACAGCAGCACAAACCC CATCGAGCACCTATACTCGCTCGAGCTGCTGTATTCACGCCTGCTCGAAA AAGGGCTCAATGCTGAACAGCCCTTCGTTCTCGCCCACTTCGTTGGTTCC CTCCCACCCGAGTACCAACAAGCGAAGTTCCTGTTGGAGACAGCAACGGC GCTGGATAGGGCCGAGATCGTCAGGATCTGGAGCACGGTGCACGCGAGCC TTCCGGAGGGGAGGAAGGCCTCGAAGGGCCAGCGGAGGGCAGAGCACGCT CTCCTCGCGAGCGGCGGTAGCGGTGGGGGAATAGCGCCGGGCCACGGCAA CGGCGGCCGCCGCAAGGGTGGCGGCGGCGGCGGCGGTGGCAACCAGAAGG GGAGTGGCGCGAAGGCTGGTGGCGGCGGCGGAGGCGGCGACGACGATGCG GGTGGCATGCGCGGTCGCTGTTTCCGGTGCGGCAGGAAGGGCCACCAGGT GGCCGACTACACCGAGAGCAAGCCCGTGCGATGTGAGACATGCAAGGGCT ACGGGCACGACAAGAGTAAGTGCCCGACCGAGGAGGCGGTGCTCGTGGTG GAAGTGCCGGCGGGGGGGGCGTCTGCGGACGCCACAGCACTGGACGTGGC AGAAGAAGCGCTGGTGGTCGGTGACATCTCAGGCGAGTGTCACAAAGTCG TTGGTCGAGGGGGTGTAGAGCAGGCTAGGCGGGGTAGATGGGTGATGAGG GAAGAGTTTGAAGGGCACGTGGGCACGGGGACGTTTCCATTCGTAGACGG CGCGCCAGAGGGGCGCAGGCCTGTGAGCTCAAAGTGGTGTTTTAGTTGGA AGACCAACAAGGAAGGGAAGATAGAAAAGTTCAGAGCGCGTCTGGTGGCT AGGGGGTTGTCGCAAATCCCCAACGTCGACTATTTCCATTCGTCTTCCCC TTGCTCATCATCCGCATCCAATGAATTGATGCTTGCGGTAGCAAACGAGA AGGGCATAAACCTCAATCACTGGGACGTGAAGCAGGCGTACACACACGCC ACGCTAGACGAGGGTTTTTTTCTGAGGCTCCCCGCTGGGTGCGGGGACAA ATCGCATAAGATTGTTAAGGCTGAGCGTGCGATTTACGGTCTGAAGCAGA GCGACGAAGTCGTGGTGATGATTATCGTGATCTACGTGGATGACATTTTG GTGGCTGTGTCTGACGAGGACTTCGAGGAGTTGCTTGTTTCTCTCAACAA GAAATTTCCCACCAAAAGTCTTGGAGAATGCGAATGGTTTGACGGGTGCG CCATTGAGAGAGATGTGGAGGCTGGGACTCTTAGAATCCCCCAAACCGCG TACATTGATAGCATGGTGAAACGCATTGATGTACAATCGACCTCCCGCAT CCCTGCTACCCCTGGTGTCGACCTAGGACCGAAGCGAGATGACGAGAAGG GAGGGGAGTGGCCGGTGAGGGAGGCAATCGGCAGCATGATGTGGCGTTCG GTGCAAGGGTTGGCGACGACGGTTGGAAGTACCGTAGTCAGCCATGGTAG TAAGACACAAAGCATCGTGTCTTTGTCTTCGACGGAATCCGAATACATTG CTGCCGGGGAGGGCCTCAAGGACGCGTTGTTTGTGCGTGCTGTGCTTTCG TTTGTTGCCCCAGAGACCAGTGGTAGCAGTATCCAGGCCCTTGAGGACAA CCAGGGGGCCATAGCGTTGGTGCAGAACCCCCTCAGCTCAGGTCGCACGA AACACATCGACGTGAGATTTCATTTCATCCGCGGATTGTTTATGTCGGGG GATATTTCGGTCAAGTTTATTCCGACTACGGAGCAACACGCGGACCTCCT AACCAAGGCCCTTAACAGGGCTAGTCTGCAGTACCACCGGCGCAAGTCAC CCCAGACGGACCACCCAAGTCCCCTCGGCAAAGCCCCACGGGCAACGAAG CCAATACCTCCGCCATGTCCGCGCCTCCCGTCGAAGACCCACCTGAGCCG ACCCGATAGCAATGGTGATTCGGCGTTGACCAACACTGGCGCTGCTCTGG ACTCTGCCGATGGCAAGCGGCAGTTCAACGGCGGGGGTAGTCAGATGGCT TTCAAAGCGAACGCGGATGCATGCATGGAATCGAAGGGTGACGCTGATTC GACACGAGGCGGTGGTCTCGACGGCAAGACCATGGACAGAAGGGAGTCCG GGATACTGGCACAGGATGGTCACGACAACAGGAAGCGGTCCCGTGACGAA TCAACGGAGGACGCCTCGGCCGAAACGCATGGTAGCGGGGAAAGAGACCT AAGACAGGCAGCGACTCGGAGGGTGCATCAGTTTCCGAAGGTGATTTGA back to top
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