EsuBft1071_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1071_8a-0001
Unique NameEsuBft1071_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_633contigScaffold_633:238294..239704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FVH4
ProteomeIdEsuBft1071_8
Protein domainsIPR013763
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length36
Hectar predicted targeting categoryother localisation
Evalue3.39e-66
EggNOG OGsCOG5333@1|root,KOG0834@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred namecit-1.2
KEGG koko:K15188
KEGG Pathwayko05202,map05202
GOsGO:0000079,GO:0000307,GO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0016538,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032991,GO:0033674,GO:0042325,GO:0042327,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044093,GO:0044424,GO:0044464,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051726,GO:0060255,GO:0061695,GO:0065007,GO:0065009,GO:0071900,GO:0071902,GO:0080090,GO:0098772,GO:1901407,GO:1901409,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1990234,GO:2000112,GO:2001141
Descriptionpositive regulation of phosphorylation of RNA polymerase II C-terminal domain
COG categoryDKL
BRITEko00000,ko00001,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1071_8aEsuBft1071_8aEctocarpus subulatus male Bft15bgeneScaffold_633 238294..239704 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1071_8a-0001-exonagat-exon-56261Ectocarpus subulatus male Bft15bexonScaffold_633 238294..238457 +
EsuBft1071_8a-0001-exonEsuBft1071_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_633 239311..239506 +
EsuBft1071_8a-0001-exonagat-exon-56260Ectocarpus subulatus male Bft15bexonScaffold_633 239696..239704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1071_8a-0001-cdsEsuBft1071_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_633 238294..238457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1071_8a-0001EsuBft1071_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_633 238294..239704 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1071_8a-0001 ID=EsuBft1071_8a-0001|Name=EsuBft1071_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=369bp|location=Sequence derived from alignment at Scaffold_633:238294..239704+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGACACAGGAGCAGCCGCAGCGAAGCCGGTAGACGAGGGAAAGGA
GCAAGCGGTCGTGACGAGGGTTGGGAGGCGCTCCGACTTTGGTTGGGAGG
ACCGTGGATGGAAGTTCACCTTGGAGGAGCTGGAAAATCCCCCCTCCCTC
AAGAAGAGCAGCAGGATGGGTTGCGGCCAAGCCGACCAGCTCTGGCGGGC
GCAACAACTCCGTTACGACAAAGAGCACCGCTCGCAGGCGCACAAGCTCA
TGTTGGAGATCTGCAAGCGGCTGACAACGAAGGCCGTGGTGATAGCTGGG
GCGATGACGATCTACCAGCGCTTCCTCGCCCTAGTATCCTTCACGGAGAT
CGACTTACACGGAGAATGA
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protein sequence of EsuBft1071_8a-0001

>EsuBft1071_8 ID=EsuBft1071_8|Name=EsuBft1071_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=122bp
MTDTGAAAAKPVDEGKEQAVVTRVGRRSDFGWEDRGWKFTLEELENPPSL
KKSSRMGCGQADQLWRAQQLRYDKEHRSQAHKLMLEICKRLTTKAVVIAG
AMTIYQRFLALVSFTEIDLHGE
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mRNA from alignment at Scaffold_633:238294..239704+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1071_8a-0001 ID=EsuBft1071_8a-0001|Name=EsuBft1071_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1411bp|location=Sequence derived from alignment at Scaffold_633:238294..239704+ (Ectocarpus subulatus male Bft15b)
ATGACTGACACAGGAGCAGCCGCAGCGAAGCCGGTAGACGAGGGAAAGGA
GCAAGCGGTCGTGACGAGGGTTGGGAGGCGCTCCGACTTTGGTTGGGAGG
ACCGTGGATGGAAGTTCACCTTGGAGGAGCTGGAAAATCCCCCCTCCCTC
AAGAAGAGCAGCAGGTGAGGATACACATTTCTACTGCTGCTGTACAGCAG
AGGTAACGATACTGTCACCTGCAGTGCCTGGGGAAGCTGTGTGATGACCG
CTCTTCTCTTTGTCTTTCTCCCCCGTCGGCAGAACTTTGATATTGGATGC
TGAATAAAAAAGCGCTGTTGTTCTTCAACGCCCCGTTCTCTTGGTGAAAG
CATCACGTGCTGCTGGTTTGGGTGCTGTAATAGCCTGCCAACCCACGCGC
ACTTTTACACCCTACACCCCAAAACCTTGAGATTTAAACAAGTGAAAAGA
ACACACTCGTGAGGGAGGGGACACTTGGACGGACCTTTCTCGTGTGCAGA
TTAAGTGCACCGTAGCAAGAAGTGTAGAGACTCCCTCCAGTTTGATCACC
GCTGCTGCCTCATCACATTATTCCGAAAGGTGGGGTGTGCATATAGCCTG
GTGCTCACGTGGAGCTATCTGGCCCGTCACGACCTGCGCGCGGCTCAAAC
CGTACTGCATGGTTCCGCCGAAATTTTTGTGAACCACACGGAGGAAGGAA
CCAGTTCGATAGAACATGTTAGCATGACATGTTAGCATGCTCATCATCAG
CCATCAGTAAATAGACTTGTCCAATGTGGGCCATAACAGTCGGCAGCAGC
AGTAGTGCAGGATGATCATGGCCATTCCGTGAGAAAAGCCCGCCGCTCAA
TCGATCGACTGTATCCAGCCGTAATCTTCAGGATTGCAGCGCCTTGTAGT
CGTTGCTATCGGGTTGGGACCTGGTACGTGCTTGCAGGCGGCCTCTCTGC
TCACTTGACATTCATTCTCGGCTGCTTTCGCCTGTGCTGCTCCCCGTCCA
TGTGGTGTGTCTTGAAGGATGGGTTGCGGCCAAGCCGACCAGCTCTGGCG
GGCGCAACAACTCCGTTACGACAAAGAGCACCGCTCGCAGGCGCACAAGC
TCATGTTGGAGATCTGCAAGCGGCTGACAACGAAGGCCGTGGTGATAGCT
GGGGCGATGACGATCTACCAGCGCTTCCTCGCCCTAGTATCCTTCACGGA
GATCGACTTACACGTGAGCAAGGGAGGTGTCCTTCATGTCGTACTACTTT
ATCTTCTGTTTCTATTCACTACTATATACCAAAACATGCTCATCGCAGCA
TGCCGTCGCGGAGAAAGTGACTTTGAACAGCAGCACGATTGTTGCTACAA
CTCGCCGCCAATCGATAGCTGCTGGCATGTTGAAGCCCGTGGGCAAACTC
AGGGAGAATGA
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Coding sequence (CDS) from alignment at Scaffold_633:238294..239704+

>EsuBft1071_8a-0001 ID=EsuBft1071_8a-0001|Name=EsuBft1071_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=369bp|location=Sequence derived from alignment at Scaffold_633:238294..239704+ (Ectocarpus subulatus male Bft15b)
ATGACTGACACAGGAGCAGCCGCAGCGAAGCCGGTAGACGAGGGAAAGGA
GCAAGCGGTCGTGACGAGGGTTGGGAGGCGCTCCGACTTTGGTTGGGAGG
ACCGTGGATGGAAGTTCACCTTGGAGGAGCTGGAAAATCCCCCCTCCCTC
AAGAAGAGCAGCAGGATGGGTTGCGGCCAAGCCGACCAGCTCTGGCGGGC
GCAACAACTCCGTTACGACAAAGAGCACCGCTCGCAGGCGCACAAGCTCA
TGTTGGAGATCTGCAAGCGGCTGACAACGAAGGCCGTGGTGATAGCTGGG
GCGATGACGATCTACCAGCGCTTCCTCGCCCTAGTATCCTTCACGGAGAT
CGACTTACACGGAGAATGA
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